Strain Fitness in Shewanella amazonensis SB2B around Sama_2949

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,504,671	-		Sama_2948	0.27	+2.7
3,504,725	+		Sama_2948	0.35	+2.9
3,504,725	+		Sama_2948	0.35	-0.0
3,504,725	+		Sama_2948	0.35	+0.5
3,504,725	+		Sama_2948	0.35	+0.8
3,504,726	-		Sama_2948	0.35	+0.6
3,504,726	-		Sama_2948	0.35	-0.0
3,504,726	-		Sama_2948	0.35	-0.7
3,504,726	-		Sama_2948	0.35	-0.0
3,504,726	-		Sama_2948	0.35	+0.6
3,504,726	-		Sama_2948	0.35	+0.4
3,504,726	-		Sama_2948	0.35	+0.9
3,504,726	-		Sama_2948	0.35	-0.8
3,504,748	+		Sama_2948	0.38	-0.5
3,504,748	+		Sama_2948	0.38	-1.9
3,504,748	+		Sama_2948	0.38	+0.1
3,504,748	+		Sama_2948	0.38	+0.4
3,504,749	-		Sama_2948	0.38	-1.8
3,504,749	-		Sama_2948	0.38	+0.8
3,504,979	+		Sama_2948	0.73	-0.0
3,504,980	-		Sama_2948	0.73	+0.1
3,505,014	+		Sama_2948	0.78	-0.3
3,505,015	-		Sama_2948	0.78	-0.5
3,505,034	-		Sama_2948	0.81	+0.8
3,505,062	-		Sama_2948	0.85	+0.0
3,505,077	-		Sama_2948	0.88	+0.6
3,505,077	-		Sama_2948	0.88	+1.1
3,505,153	+				-0.7
3,505,154	-				+0.8
3,505,262	-				-1.0
3,505,262	-				-2.3
3,505,264	-				+0.4
3,505,264	-				-0.9
3,505,279	-				-0.2
3,505,313	+				-0.1
3,505,313	+				-0.7
3,505,315	+				-0.7
3,505,320	+				+2.0
3,505,372	+				+0.5
3,505,373	-				-1.0
3,505,373	-				-1.2
3,505,378	-				-0.0
3,505,403	+				-0.3
3,505,403	+				+0.8
3,505,408	-				-0.7
3,505,408	-				-1.5
3,505,415	+				+1.1
3,505,415	+				+0.4
3,505,415	+				-0.5
3,505,416	-				-0.2
3,505,437	+				-1.2
3,505,437	+				+2.3
3,505,437	+				-0.1
3,505,438	-				-0.3
3,505,507	+				-1.0
3,505,508	-				+0.2
3,505,522	+				-0.9
3,505,522	+				-0.4
3,505,523	-				+0.1
3,505,523	-				-0.9
3,505,527	+				-1.5
3,505,527	+				-0.3
3,505,527	+				+0.7
3,505,527	+				-0.1
3,505,527	+				+1.0
3,505,527	+				-1.8
3,505,527	+				-0.4
3,505,527	+				+0.7
3,505,527	+				-0.0
3,505,528	-				-0.2
3,505,528	-				-0.1
3,505,528	-				-0.1
3,505,528	-				+0.5
3,505,528	-				-0.3
3,505,528	-				-0.9
3,505,528	-				-1.0
3,505,528	-				+1.5
3,505,535	-				-0.6
3,505,535	-				+0.5
3,505,535	-				-0.7
3,505,562	+				+0.2
3,505,563	-				+0.7
3,505,600	-				-0.5
3,505,633	+				+0.3
3,505,633	+				-0.4
3,505,633	+				+1.9
3,505,634	-				+0.1
3,505,634	-				-0.2
3,505,640	+				-1.4
3,505,641	-				+0.1
3,505,642	+				-0.6
3,505,643	-				+0.4
3,505,643	-				+0.6
3,505,643	-				-1.4
3,505,649	+				-0.5
3,505,661	-				-0.2
3,505,664	+				-0.4
3,505,664	+				+1.3
3,505,664	+				+1.2
3,505,664	+				-0.2
3,505,664	+				+0.0
3,505,664	+				+0.5
3,505,665	-				+0.2
3,505,665	-				+0.2
3,505,665	-				+0.5
3,505,665	-				-0.8
3,505,665	-				-0.5
3,505,696	+				-0.3
3,505,696	+				+0.3
3,505,696	+				+0.2
3,505,697	-				-0.1
3,505,697	-				-0.9
3,505,697	-				+0.2
3,505,697	-				+1.9
3,505,697	-				+0.5
3,505,740	+				+0.1
3,505,740	+				+0.9
3,505,740	+				-0.7
3,505,740	+				+1.1
3,505,740	+				-0.2
3,505,746	+				+1.3
3,505,746	+				-0.9
3,505,746	+				+0.2
3,505,746	+				-0.4
3,505,746	+				+0.9
3,505,746	+				+0.3
3,505,746	+				+0.6
3,505,746	+				+0.4
3,505,746	+				-0.5
3,505,746	+				-0.6
3,505,747	-				-0.0
3,505,747	-				+1.0
3,505,747	-				+0.2
3,505,747	-				-0.0
3,505,747	-				+0.6
3,505,747	-				+0.2
3,505,747	-				-1.2
3,505,747	-				+0.3
3,505,747	-				+1.3
3,505,779	-				-2.2
3,505,919	-		Sama_2949	0.20	-1.0
3,505,919	-		Sama_2949	0.20	+1.3
3,505,919	-		Sama_2949	0.20	+0.4
3,505,924	+		Sama_2949	0.21	-0.3
3,505,971	+		Sama_2949	0.24	+0.6
3,505,972	-		Sama_2949	0.25	+0.6
3,505,975	+		Sama_2949	0.25	-1.9
3,506,154	+		Sama_2949	0.39	+0.8
3,506,154	+		Sama_2949	0.39	+0.1
3,506,154	+		Sama_2949	0.39	+0.3
3,506,154	+		Sama_2949	0.39	+0.4
3,506,154	+		Sama_2949	0.39	+0.3
3,506,154	+		Sama_2949	0.39	+0.8
3,506,154	+		Sama_2949	0.39	-0.2
3,506,154	+		Sama_2949	0.39	-0.7
3,506,154	+		Sama_2949	0.39	+0.3
3,506,154	+		Sama_2949	0.39	+1.5
3,506,154	+		Sama_2949	0.39	-0.1
3,506,154	+		Sama_2949	0.39	+0.5
3,506,155	-		Sama_2949	0.39	+0.8
3,506,155	-		Sama_2949	0.39	+0.5
3,506,155	-		Sama_2949	0.39	+0.0
3,506,155	-		Sama_2949	0.39	+1.7
3,506,155	-		Sama_2949	0.39	+0.9
3,506,155	-		Sama_2949	0.39	+1.1
3,506,155	-		Sama_2949	0.39	-0.4
3,506,155	-		Sama_2949	0.39	-0.2
3,506,155	-		Sama_2949	0.39	-0.4
3,506,155	-		Sama_2949	0.39	+0.9
3,506,158	+		Sama_2949	0.40	-1.0
3,506,158	+		Sama_2949	0.40	+0.2
3,506,159	-		Sama_2949	0.40	-0.6
3,506,191	+		Sama_2949	0.42	+0.1
3,506,338	+		Sama_2949	0.54	+0.3
3,506,339	-		Sama_2949	0.54	-0.7
3,506,377	+		Sama_2949	0.57	+0.1
3,506,400	+		Sama_2949	0.59	-0.2
3,506,400	+		Sama_2949	0.59	+1.1
3,506,400	+		Sama_2949	0.59	+0.9
3,506,401	-		Sama_2949	0.59	+1.3
3,506,558	-		Sama_2949	0.72	+0.5
3,506,612	+		Sama_2949	0.77	-1.0
3,506,612	+		Sama_2949	0.77	-0.1
3,506,612	+		Sama_2949	0.77	+0.7
3,506,658	+		Sama_2949	0.80	-0.3
3,506,720	-		Sama_2949	0.85	-1.2
3,506,725	+		Sama_2949	0.86	+0.1
3,506,726	-		Sama_2949	0.86	-0.3
3,506,758	+		Sama_2949	0.88	+0.5
3,506,759	-		Sama_2949	0.89	-0.3
3,506,778	-				+0.2
3,506,778	-				-0.9
3,506,797	+				+0.8
3,506,797	+				+0.4
3,506,798	-				-0.2
3,506,799	+				+1.1
3,506,799	+				-0.3
3,506,799	+				-0.4
3,506,799	+				-0.6
3,506,799	+				-0.2
3,506,799	+				-0.7
3,506,799	+				+0.4
3,506,799	+				+0.6
3,506,799	+				+0.0
3,506,799	+				-0.6
3,506,799	+				-1.1
3,506,800	-				+0.0
3,506,800	-				-0.6
3,506,800	-				+0.9
3,506,800	-				+0.9
3,506,800	-				-0.1
3,506,800	-				+0.3
3,506,800	-				-0.5
3,506,800	-				+0.1
3,506,800	-				-1.0
3,506,800	-				+0.5
3,506,804	+				-1.2
3,506,804	+				+0.1
3,506,804	+				-0.4
3,506,805	-				-0.7
3,506,960	+				-0.7
3,506,960	+				-0.9
3,506,961	-				+1.3
3,506,991	+				+0.5
3,506,991	+				-0.8
3,507,004	+				-0.1
3,507,004	+				+0.3
3,507,004	+				-0.9
3,507,004	+				-0.3
3,507,007	+				-0.7
3,507,007	+				+1.3
3,507,007	+				+0.4
3,507,007	+				-1.9
3,507,007	+				+1.7