Strain Fitness in Shewanella amazonensis SB2B around Sama_2773

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,313,105	-		Sama_2772	0.53	+0.0
3,313,124	+		Sama_2772	0.54	+1.2
3,313,125	-		Sama_2772	0.54	-1.6
3,313,135	+		Sama_2772	0.55	-0.7
3,313,136	-		Sama_2772	0.55	-0.1
3,313,136	-		Sama_2772	0.55	+0.5
3,313,145	+		Sama_2772	0.56	-0.2
3,313,145	+		Sama_2772	0.56	-1.1
3,313,145	+		Sama_2772	0.56	+0.0
3,313,146	-		Sama_2772	0.56	+0.3
3,313,146	-		Sama_2772	0.56	+0.0
3,313,146	-		Sama_2772	0.56	-0.4
3,313,146	-		Sama_2772	0.56	+0.0
3,313,146	-		Sama_2772	0.56	-0.9
3,313,200	+		Sama_2772	0.60	-0.4
3,313,200	+		Sama_2772	0.60	+0.3
3,313,200	+		Sama_2772	0.60	+0.9
3,313,200	+		Sama_2772	0.60	-0.4
3,313,200	+		Sama_2772	0.60	+0.3
3,313,201	-		Sama_2772	0.60	+0.4
3,313,201	-		Sama_2772	0.60	+0.0
3,313,201	-		Sama_2772	0.60	-0.1
3,313,201	-		Sama_2772	0.60	-0.8
3,313,241	+		Sama_2772	0.63	+0.5
3,313,241	+		Sama_2772	0.63	-0.6
3,313,241	+		Sama_2772	0.63	+0.7
3,313,241	+		Sama_2772	0.63	+0.0
3,313,242	-		Sama_2772	0.63	-1.0
3,313,242	-		Sama_2772	0.63	-1.6
3,313,242	-		Sama_2772	0.63	-0.1
3,313,242	-		Sama_2772	0.63	+0.7
3,313,242	-		Sama_2772	0.63	-0.4
3,313,245	+		Sama_2772	0.64	-0.2
3,313,245	+		Sama_2772	0.64	-0.4
3,313,245	+		Sama_2772	0.64	-0.8
3,313,245	+		Sama_2772	0.64	-0.7
3,313,246	-		Sama_2772	0.64	-0.8
3,313,246	-		Sama_2772	0.64	-0.1
3,313,246	-		Sama_2772	0.64	+0.6
3,313,298	+		Sama_2772	0.68	-1.8
3,313,298	+		Sama_2772	0.68	+0.2
3,313,299	-		Sama_2772	0.68	+0.3
3,313,319	+		Sama_2772	0.69	-1.1
3,313,319	+		Sama_2772	0.69	-1.1
3,313,319	+		Sama_2772	0.69	+0.1
3,313,320	-		Sama_2772	0.69	+0.9
3,313,333	+		Sama_2772	0.70	-0.5
3,313,333	+		Sama_2772	0.70	+0.2
3,313,333	+		Sama_2772	0.70	+0.6
3,313,333	+		Sama_2772	0.70	-1.9
3,313,334	-		Sama_2772	0.70	+0.2
3,313,334	-		Sama_2772	0.70	-0.5
3,313,334	-		Sama_2772	0.70	-0.6
3,313,334	-		Sama_2772	0.70	+0.2
3,313,334	-		Sama_2772	0.70	-0.4
3,313,334	-		Sama_2772	0.70	-0.9
3,313,334	-		Sama_2772	0.70	-1.3
3,313,351	+		Sama_2772	0.72	+0.2
3,313,367	-		Sama_2772	0.73	+0.1
3,313,377	-		Sama_2772	0.74	-0.3
3,313,385	+		Sama_2772	0.74	+0.3
3,313,386	-		Sama_2772	0.74	-1.2
3,313,428	-		Sama_2772	0.77	-1.1
3,313,486	+		Sama_2772	0.82	+0.8
3,313,486	+		Sama_2772	0.82	+0.9
3,313,486	+		Sama_2772	0.82	-0.2
3,313,487	-		Sama_2772	0.82	-0.1
3,313,487	-		Sama_2772	0.82	+0.5
3,313,487	-		Sama_2772	0.82	-2.0
3,313,487	-		Sama_2772	0.82	-0.2
3,313,614	-				-1.0
3,313,753	+				-0.1
3,313,789	+				-0.3
3,313,789	+				+1.1
3,313,790	-				+0.7
3,313,790	-				-0.5
3,313,822	-				-0.0
3,313,881	+				-0.0
3,313,882	-				-0.7
3,313,890	+				+0.3
3,313,934	-				-1.3
3,313,981	+				-1.1
3,313,982	-				-0.2
3,314,103	+				+0.7
3,314,103	+				+0.2
3,314,104	-				+0.6
3,314,104	-				-0.1
3,314,104	-				+0.4
3,314,118	-				+0.3
3,314,164	+				-1.3
3,314,164	+				+0.2
3,314,164	+				+0.1
3,314,164	+				+1.2
3,314,165	-				-0.1
3,314,165	-				+0.7
3,314,165	-				-0.8
3,314,202	-				-0.1
3,314,202	-				+0.1
3,314,219	-				-0.0
3,314,219	-				-0.8
3,314,219	-				-0.4
3,314,287	+				-2.0
3,314,299	+				-1.1
3,314,362	+		Sama_2773	0.12	-1.0
3,314,362	+		Sama_2773	0.12	+0.1
3,314,362	+		Sama_2773	0.12	-0.4
3,314,362	+		Sama_2773	0.12	+0.5
3,314,362	+		Sama_2773	0.12	-0.2
3,314,363	-		Sama_2773	0.12	-1.7
3,314,363	-		Sama_2773	0.12	-0.1
3,314,363	-		Sama_2773	0.12	-1.4
3,314,363	-		Sama_2773	0.12	-0.9
3,314,363	-		Sama_2773	0.12	+0.2
3,314,363	-		Sama_2773	0.12	+2.5
3,314,363	-		Sama_2773	0.12	-0.1
3,314,363	-		Sama_2773	0.12	+0.0
3,314,363	-		Sama_2773	0.12	+1.0
3,314,378	+		Sama_2773	0.12	-0.6
3,314,418	-		Sama_2773	0.14	+0.3
3,314,418	-		Sama_2773	0.14	+0.2
3,314,455	-		Sama_2773	0.15	+0.9
3,314,455	-		Sama_2773	0.15	-0.2
3,314,455	-		Sama_2773	0.15	+0.7
3,314,612	+		Sama_2773	0.21	-1.9
3,314,612	+		Sama_2773	0.21	-0.7
3,314,669	+		Sama_2773	0.24	-0.8
3,314,670	-		Sama_2773	0.24	-0.5
3,314,670	-		Sama_2773	0.24	-0.7
3,314,851	+		Sama_2773	0.31	+1.1
3,314,851	+		Sama_2773	0.31	+0.8
3,314,851	+		Sama_2773	0.31	+0.1
3,314,852	-		Sama_2773	0.31	+0.2
3,314,852	-		Sama_2773	0.31	-0.2
3,314,852	-		Sama_2773	0.31	+0.6
3,314,852	-		Sama_2773	0.31	+0.6
3,314,933	+		Sama_2773	0.34	-1.4
3,314,934	-		Sama_2773	0.34	-0.4
3,314,934	-		Sama_2773	0.34	+1.2
3,314,958	+		Sama_2773	0.35	-0.3
3,314,959	-		Sama_2773	0.35	-0.9
3,314,980	+		Sama_2773	0.36	+0.3
3,314,980	+		Sama_2773	0.36	+0.6
3,314,980	+		Sama_2773	0.36	-1.8
3,314,980	+		Sama_2773	0.36	+1.8
3,314,981	-		Sama_2773	0.36	-0.8
3,314,981	-		Sama_2773	0.36	-0.5
3,314,981	-		Sama_2773	0.36	-0.2
3,314,981	-		Sama_2773	0.36	+0.6
3,314,981	-		Sama_2773	0.36	-0.4
3,314,981	-		Sama_2773	0.36	-1.1
3,314,981	-		Sama_2773	0.36	+0.1
3,314,981	-		Sama_2773	0.36	+0.0
3,314,981	-		Sama_2773	0.36	+0.2
3,315,035	+		Sama_2773	0.38	-0.4
3,315,036	-		Sama_2773	0.38	+0.2
3,315,132	+		Sama_2773	0.42	+0.4
3,315,132	+		Sama_2773	0.42	-0.8
3,315,132	+		Sama_2773	0.42	-0.5
3,315,132	+		Sama_2773	0.42	-0.4
3,315,133	-		Sama_2773	0.42	-0.1
3,315,137	+		Sama_2773	0.42	-1.8
3,315,137	+		Sama_2773	0.42	-1.1
3,315,235	+		Sama_2773	0.46	-0.1
3,315,235	+		Sama_2773	0.46	-1.1
3,315,235	+		Sama_2773	0.46	+1.4
3,315,236	-		Sama_2773	0.46	+0.0
3,315,236	-		Sama_2773	0.46	-0.3
3,315,236	-		Sama_2773	0.46	-0.7
3,315,236	-		Sama_2773	0.46	-1.5
3,315,262	+		Sama_2773	0.47	-0.4
3,315,262	+		Sama_2773	0.47	-0.3
3,315,262	+		Sama_2773	0.47	+0.4
3,315,262	+		Sama_2773	0.47	-0.5
3,315,262	+		Sama_2773	0.47	-0.2
3,315,262	+		Sama_2773	0.47	-0.9
3,315,262	+		Sama_2773	0.47	+1.5
3,315,263	-		Sama_2773	0.47	+1.1
3,315,263	-		Sama_2773	0.47	-0.4
3,315,263	-		Sama_2773	0.47	-0.8
3,315,263	-		Sama_2773	0.47	-0.0
3,315,263	-		Sama_2773	0.47	-0.2
3,315,263	-		Sama_2773	0.47	+1.7
3,315,263	-		Sama_2773	0.47	-0.4
3,315,263	-		Sama_2773	0.47	-0.1
3,315,263	-		Sama_2773	0.47	+0.6
3,315,292	+		Sama_2773	0.48	+0.5
3,315,292	+		Sama_2773	0.48	+0.1
3,315,292	+		Sama_2773	0.48	-2.6
3,315,292	+		Sama_2773	0.48	-0.3
3,315,293	-		Sama_2773	0.48	-1.6
3,315,293	-		Sama_2773	0.48	+0.5
3,315,293	-		Sama_2773	0.48	+0.3
3,315,293	-		Sama_2773	0.48	-1.1
3,315,368	+		Sama_2773	0.51	-0.9
3,315,369	-		Sama_2773	0.51	+1.1
3,315,395	+		Sama_2773	0.52	-0.2
3,315,396	-		Sama_2773	0.52	-0.1
3,315,396	-		Sama_2773	0.52	-0.4
3,315,447	+		Sama_2773	0.54	+0.1
3,315,448	-		Sama_2773	0.54	-0.1
3,315,469	+		Sama_2773	0.55	+0.2
3,315,472	+		Sama_2773	0.55	-1.0
3,315,472	+		Sama_2773	0.55	-0.2
3,315,472	+		Sama_2773	0.55	-0.5
3,315,472	+		Sama_2773	0.55	-0.4
3,315,473	-		Sama_2773	0.55	+0.0
3,315,473	-		Sama_2773	0.55	+0.2
3,315,473	-		Sama_2773	0.55	+0.2
3,315,473	-		Sama_2773	0.55	+0.1
3,315,529	-		Sama_2773	0.57	-0.6
3,315,529	-		Sama_2773	0.57	+0.2
3,315,545	+		Sama_2773	0.58	-0.6
3,315,546	-		Sama_2773	0.58	+0.2
3,315,546	-		Sama_2773	0.58	-0.3
3,315,546	-		Sama_2773	0.58	-0.2
3,315,571	+		Sama_2773	0.59	+0.3
3,315,571	+		Sama_2773	0.59	+0.0
3,315,571	+		Sama_2773	0.59	-0.1
3,315,571	+		Sama_2773	0.59	+1.2
3,315,571	+		Sama_2773	0.59	+0.7
3,315,571	+		Sama_2773	0.59	-0.0
3,315,571	+		Sama_2773	0.59	+0.7
3,315,572	-		Sama_2773	0.59	+0.1
3,315,572	-		Sama_2773	0.59	+0.6
3,315,593	+		Sama_2773	0.60	+0.8
3,315,593	+		Sama_2773	0.60	-0.6
3,315,593	+		Sama_2773	0.60	-0.0
3,315,594	-		Sama_2773	0.60	+0.5
3,315,607	+		Sama_2773	0.60	+0.9
3,315,607	+		Sama_2773	0.60	+0.4
3,315,614	+		Sama_2773	0.61	-0.4
3,315,614	+		Sama_2773	0.61	-1.6
3,315,614	+		Sama_2773	0.61	-1.0
3,315,614	+		Sama_2773	0.61	+2.2
3,315,614	+		Sama_2773	0.61	-1.0
3,315,615	-		Sama_2773	0.61	-0.1
3,315,638	+		Sama_2773	0.62	+0.2
3,315,639	-		Sama_2773	0.62	+0.0
3,315,639	-		Sama_2773	0.62	-0.4
3,315,678	-		Sama_2773	0.63	-1.3
3,315,819	-		Sama_2773	0.69	+0.2
3,315,972	-		Sama_2773	0.75	-0.4
3,316,003	+		Sama_2773	0.76	-0.1
3,316,004	-		Sama_2773	0.76	+0.0
3,316,088	-		Sama_2773	0.79	-1.3
3,316,088	-		Sama_2773	0.79	-0.1
3,316,108	-		Sama_2773	0.80	-1.1
3,316,110	+		Sama_2773	0.80	-1.0
3,316,110	+		Sama_2773	0.80	-0.4
3,316,110	+		Sama_2773	0.80	+0.3
3,316,111	-		Sama_2773	0.80	-1.6
3,316,111	-		Sama_2773	0.80	+0.4
3,316,111	-		Sama_2773	0.80	+0.0
3,316,183	+		Sama_2773	0.83	-1.0
3,316,183	+		Sama_2773	0.83	-0.9
3,316,183	+		Sama_2773	0.83	+1.2
3,316,184	-		Sama_2773	0.83	-1.5
3,316,212	+		Sama_2773	0.84	+0.0
3,316,269	+		Sama_2773	0.86	+0.2
3,316,285	+		Sama_2773	0.87	+1.2
3,316,285	+		Sama_2773	0.87	-1.7
3,316,301	+		Sama_2773	0.87	-0.2
3,316,302	-		Sama_2773	0.87	+0.4
3,316,302	-		Sama_2773	0.87	+0.4
3,316,314	-		Sama_2773	0.88	+0.2
3,316,331	+		Sama_2773	0.89	+0.2
3,316,369	+				-0.2
3,316,397	+				-0.3
3,316,398	-				+0.2
3,316,441	+				+0.2
3,316,441	+				+0.5
3,316,441	+				+0.2
3,316,441	+				-2.0
3,316,441	+				+0.9
3,316,441	+				-0.9
3,316,442	-				+1.2
3,316,442	-				+0.1
3,316,442	-				-0.1
3,316,484	+				-0.1
3,316,485	-				+0.5
3,316,485	-				+0.6
3,316,498	+				-0.4
3,316,498	+				+0.2
3,316,601	+				+0.4
3,316,601	+				-1.1
3,316,647	+				+0.4
3,316,668	+				-0.8
3,316,668	+				+0.1
3,316,668	+				+0.1
3,316,669	-				-0.2
3,316,669	-				-1.0
3,316,669	-				-1.3
3,316,669	-				+0.9
3,316,669	-				+0.0
3,316,671	+				-0.2
3,316,671	+				-1.1
3,316,671	+				+0.7
3,316,672	-				+0.1
3,316,672	-				-0.4
3,316,672	-				+0.2
3,316,680	+				+0.2
3,316,680	+				+1.0
3,316,681	-				+0.3
3,316,713	-				-0.3
3,316,748	+				-0.4
3,316,748	+				+0.2
3,316,748	+				+0.6
3,316,748	+				+1.5
3,316,748	+				-0.4
3,316,748	+				-0.0
3,316,748	+				+0.9
3,316,748	+				-0.6
3,316,748	+				+0.2
3,316,748	+				-0.7
3,316,748	+				-0.5
3,316,748	+				+0.1
3,316,748	+				+0.6
3,316,748	+				+0.2
3,316,748	+				-0.4
3,316,748	+				-0.1
3,316,748	+				+0.2
3,316,749	+				+0.2
3,316,749	-				-0.4
3,316,749	-				-0.2
3,316,749	-				+1.2
3,316,749	-				+0.1
3,316,749	-				+0.3
3,316,749	-				-0.3
3,316,749	-				-0.1
3,316,749	-				-0.1
3,316,749	-				+0.2
3,316,749	-				+0.4
3,316,749	-				+0.4
3,316,749	-				+0.3
3,316,749	-				-0.3
3,316,749	-				-0.3
3,316,749	-				-0.3
3,316,749	-				-0.9
3,316,749	-				-0.4
3,316,798	+				+0.7
3,316,799	-				-0.3
3,316,836	-				-0.0
3,316,891	-				-0.1
3,316,927	+		Sama_2774	0.12	+0.5
3,316,927	+		Sama_2774	0.12	+1.0
3,316,927	+		Sama_2774	0.12	+0.0
3,316,928	-		Sama_2774	0.12	-1.4
3,316,967	+		Sama_2774	0.19	+0.8
3,316,968	-		Sama_2774	0.19	+0.2
3,317,035	+		Sama_2774	0.31	-0.1
3,317,035	+		Sama_2774	0.31	+0.3
3,317,105	+		Sama_2774	0.43	+0.9
3,317,105	+		Sama_2774	0.43	+0.9
3,317,105	+		Sama_2774	0.43	-0.5
3,317,105	+		Sama_2774	0.43	-0.0
3,317,105	+		Sama_2774	0.43	-0.5
3,317,105	+		Sama_2774	0.43	+1.6
3,317,106	-		Sama_2774	0.43	-0.1
3,317,106	-		Sama_2774	0.43	+0.5
3,317,106	-		Sama_2774	0.43	+0.5
3,317,106	-		Sama_2774	0.43	+0.3
3,317,106	-		Sama_2774	0.43	+0.6
3,317,106	-		Sama_2774	0.43	-0.4
3,317,106	-		Sama_2774	0.43	+0.5
3,317,106	-		Sama_2774	0.43	+0.8
3,317,106	-		Sama_2774	0.43	-0.7
3,317,106	-		Sama_2774	0.43	+0.6
3,317,108	-		Sama_2774	0.44	+0.9
3,317,108	-		Sama_2774	0.44	+0.9
3,317,162	+		Sama_2774	0.53	-0.3
3,317,162	+		Sama_2774	0.53	+0.3
3,317,162	+		Sama_2774	0.53	-0.1
3,317,162	+		Sama_2774	0.53	-0.5
3,317,162	+		Sama_2774	0.53	-1.3
3,317,163	-		Sama_2774	0.53	+0.7
3,317,163	-		Sama_2774	0.53	+0.2
3,317,163	-		Sama_2774	0.53	-1.1
3,317,163	-		Sama_2774	0.53	-0.4
3,317,163	-		Sama_2774	0.53	-0.1
3,317,166	+		Sama_2774	0.54	+2.8
3,317,166	+		Sama_2774	0.54	+0.3
3,317,167	-		Sama_2774	0.54	+0.2
3,317,167	-		Sama_2774	0.54	-0.9
3,317,172	+		Sama_2774	0.55	+0.2
3,317,172	+		Sama_2774	0.55	-0.6
3,317,172	+		Sama_2774	0.55	+1.0
3,317,172	+		Sama_2774	0.55	-0.2
3,317,172	+		Sama_2774	0.55	+0.6
3,317,173	-		Sama_2774	0.55	-0.2
3,317,173	-		Sama_2774	0.55	+0.6
3,317,173	-		Sama_2774	0.55	+0.9
3,317,173	-		Sama_2774	0.55	-0.5
3,317,217	+		Sama_2774	0.63	-1.0
3,317,217	+		Sama_2774	0.63	+0.1
3,317,217	+		Sama_2774	0.63	-0.0
3,317,218	-		Sama_2774	0.63	+0.3
3,317,218	-		Sama_2774	0.63	+1.8
3,317,237	+		Sama_2774	0.66	+0.9
3,317,238	-		Sama_2774	0.67	+0.3
3,317,238	-		Sama_2774	0.67	-0.4
3,317,238	-		Sama_2774	0.67	-0.3
3,317,238	-		Sama_2774	0.67	+0.9
3,317,293	+		Sama_2774	0.76	+0.7
3,317,293	+		Sama_2774	0.76	-0.1
3,317,293	+		Sama_2774	0.76	+0.4
3,317,293	+		Sama_2774	0.76	-0.1
3,317,294	-		Sama_2774	0.77	+0.1
3,317,294	-		Sama_2774	0.77	+0.2
3,317,331	+		Sama_2774	0.83	-0.2
3,317,366	+		Sama_2774	0.89	-2.4
3,317,566	+				-0.5
3,317,567	-				-1.5
3,317,612	-		Sama_2775	0.12	-0.6