Strain Fitness in Shewanella amazonensis SB2B around Sama_2765

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,305,721	+				+0.1
3,305,721	+				+0.1
3,305,721	+				+0.8
3,305,721	+				+0.7
3,305,721	+				+0.5
3,305,722	-				-0.1
3,305,722	-				-1.7
3,305,722	-				-0.7
3,305,722	-				+0.7
3,305,731	+		Sama_2764	0.10	+1.2
3,305,734	+		Sama_2764	0.11	+0.6
3,305,734	+		Sama_2764	0.11	+0.2
3,305,735	-		Sama_2764	0.11	-2.3
3,305,746	+		Sama_2764	0.12	+0.6
3,305,746	+		Sama_2764	0.12	-1.9
3,305,746	+		Sama_2764	0.12	+0.2
3,305,747	-		Sama_2764	0.12	+0.7
3,305,747	-		Sama_2764	0.12	+0.5
3,305,747	-		Sama_2764	0.12	+0.4
3,305,747	-		Sama_2764	0.12	-0.2
3,305,747	-		Sama_2764	0.12	+1.1
3,305,750	+		Sama_2764	0.12	-0.3
3,305,750	+		Sama_2764	0.12	-0.7
3,305,750	+		Sama_2764	0.12	-0.7
3,305,750	+		Sama_2764	0.12	-0.0
3,305,750	+		Sama_2764	0.12	-0.8
3,305,750	+		Sama_2764	0.12	+0.1
3,305,751	-		Sama_2764	0.12	+0.6
3,305,751	-		Sama_2764	0.12	-1.8
3,305,751	-		Sama_2764	0.12	+1.2
3,305,751	-		Sama_2764	0.12	-0.2
3,305,751	-		Sama_2764	0.12	-0.3
3,305,751	-		Sama_2764	0.12	-0.8
3,305,751	-		Sama_2764	0.12	-1.4
3,305,751	-		Sama_2764	0.12	+1.0
3,305,751	-		Sama_2764	0.12	+0.9
3,305,820	+		Sama_2764	0.20	+0.1
3,305,821	-		Sama_2764	0.20	+1.2
3,305,821	-		Sama_2764	0.20	+2.8
3,305,821	-		Sama_2764	0.20	-1.1
3,305,903	+		Sama_2764	0.28	+2.8
3,305,911	+		Sama_2764	0.29	-0.2
3,305,911	+		Sama_2764	0.29	+0.7
3,305,912	-		Sama_2764	0.29	-0.0
3,305,927	+		Sama_2764	0.30	-0.4
3,305,927	+		Sama_2764	0.30	+1.0
3,305,927	+		Sama_2764	0.30	+0.8
3,305,927	+		Sama_2764	0.30	-0.7
3,305,928	-		Sama_2764	0.31	+0.4
3,305,928	-		Sama_2764	0.31	+1.9
3,306,011	+		Sama_2764	0.39	-0.2
3,306,011	+		Sama_2764	0.39	+0.4
3,306,012	-		Sama_2764	0.39	+0.0
3,306,012	-		Sama_2764	0.39	-0.6
3,306,029	+		Sama_2764	0.41	+0.8
3,306,044	+		Sama_2764	0.42	-0.4
3,306,046	-		Sama_2764	0.43	+1.2
3,306,141	+		Sama_2764	0.52	+0.4
3,306,158	+		Sama_2764	0.54	+0.1
3,306,158	+		Sama_2764	0.54	+0.9
3,306,159	-		Sama_2764	0.54	-0.3
3,306,175	-		Sama_2764	0.56	+0.2
3,306,175	-		Sama_2764	0.56	+0.5
3,306,197	+		Sama_2764	0.58	+0.3
3,306,311	+		Sama_2764	0.70	-2.1
3,306,311	+		Sama_2764	0.70	-1.6
3,306,311	+		Sama_2764	0.70	-0.6
3,306,312	-		Sama_2764	0.70	-0.5
3,306,312	-		Sama_2764	0.70	+0.3
3,306,312	-		Sama_2764	0.70	+0.9
3,306,349	+		Sama_2764	0.74	+0.0
3,306,350	-		Sama_2764	0.74	-0.1
3,306,350	-		Sama_2764	0.74	+0.1
3,306,350	-		Sama_2764	0.74	-0.2
3,306,357	+		Sama_2764	0.74	-0.1
3,306,357	+		Sama_2764	0.74	-0.2
3,306,358	-		Sama_2764	0.75	-0.5
3,306,358	-		Sama_2764	0.75	-0.5
3,306,402	+		Sama_2764	0.79	-1.5
3,306,403	-		Sama_2764	0.79	-0.5
3,306,403	-		Sama_2764	0.79	+0.4
3,306,403	-		Sama_2764	0.79	-0.2
3,306,408	+		Sama_2764	0.80	+0.5
3,306,408	+		Sama_2764	0.80	+0.2
3,306,408	+		Sama_2764	0.80	+0.7
3,306,408	+		Sama_2764	0.80	-0.3
3,306,409	-		Sama_2764	0.80	+0.2
3,306,409	-		Sama_2764	0.80	-1.6
3,306,409	-		Sama_2764	0.80	+0.5
3,306,410	+		Sama_2764	0.80	-0.4
3,306,410	+		Sama_2764	0.80	+0.9
3,306,410	+		Sama_2764	0.80	-0.8
3,306,410	+		Sama_2764	0.80	-0.3
3,306,410	+		Sama_2764	0.80	+0.1
3,306,411	-		Sama_2764	0.80	-0.6
3,306,411	-		Sama_2764	0.80	+0.7
3,306,411	-		Sama_2764	0.80	-0.4
3,306,411	-		Sama_2764	0.80	-0.8
3,306,411	-		Sama_2764	0.80	+1.2
3,306,411	-		Sama_2764	0.80	-1.1
3,306,411	-		Sama_2764	0.80	+0.2
3,306,411	-		Sama_2764	0.80	+1.0
3,306,411	-		Sama_2764	0.80	-0.8
3,306,411	-		Sama_2764	0.80	+0.1
3,306,466	+		Sama_2764	0.86	+0.4
3,306,587	+				-0.9
3,306,650	-				-1.1
3,306,654	+				+0.4
3,306,654	+				-0.9
3,306,655	-				+0.1
3,306,655	-				-0.5
3,306,655	-				+0.6
3,306,655	-				+0.2
3,306,657	+				+0.2
3,306,658	-				-0.4
3,306,664	+				-0.9
3,306,675	-				+0.3
3,306,691	+				+0.3
3,306,691	+				-0.3
3,306,691	+				+0.2
3,306,691	+				-0.4
3,306,691	+				+0.4
3,306,691	+				-1.6
3,306,692	-				-0.1
3,306,692	-				-0.6
3,306,692	-				+0.2
3,306,692	-				+0.3
3,306,692	-				+0.9
3,306,706	-				+0.2
3,306,706	-				-0.7
3,306,715	-				+1.0
3,306,715	-				-0.1
3,306,715	-				+0.9
3,306,808	-		Sama_2765	0.13	+0.7
3,306,815	+		Sama_2765	0.13	-0.3
3,306,815	+		Sama_2765	0.13	+1.9
3,306,816	-		Sama_2765	0.14	+1.9
3,306,816	-		Sama_2765	0.14	+0.9
3,306,856	+		Sama_2765	0.18	-0.4
3,306,857	-		Sama_2765	0.18	+0.4
3,306,857	-		Sama_2765	0.18	-0.4
3,306,857	-		Sama_2765	0.18	-1.5
3,306,857	-		Sama_2765	0.18	+0.7
3,306,894	+		Sama_2765	0.22	+0.6
3,306,895	-		Sama_2765	0.22	-0.9
3,306,922	+		Sama_2765	0.25	+0.6
3,307,101	+		Sama_2765	0.45	+0.1
3,307,101	+		Sama_2765	0.45	+1.1
3,307,101	+		Sama_2765	0.45	+0.4
3,307,263	-		Sama_2765	0.62	+0.5
3,307,312	-		Sama_2765	0.68	+1.1
3,307,480	+		Sama_2765	0.86	+0.3
3,307,515	+				+0.0
3,307,516	-				-0.9
3,307,516	-				-0.2
3,307,560	-				+1.1
3,307,605	-				-0.5
3,307,774	+		Sama_2766	0.55	-0.2
3,307,775	-		Sama_2766	0.55	+0.6
3,307,775	-		Sama_2766	0.55	+0.2
3,307,775	-		Sama_2766	0.55	+0.9
3,307,794	+		Sama_2766	0.63	-0.0
3,307,794	+		Sama_2766	0.63	-0.6
3,307,794	+		Sama_2766	0.63	-0.8
3,307,795	-		Sama_2766	0.63	-0.2
3,307,795	-		Sama_2766	0.63	+0.7
3,307,795	-		Sama_2766	0.63	-0.6
3,307,840	-		Sama_2766	0.81	+0.3
3,307,864	+				-0.8
3,307,864	+				-0.8
3,307,864	+				+1.7
3,307,864	+				+1.3
3,307,864	+				-0.5
3,307,864	+				+0.8
3,307,865	-				+0.3
3,307,865	-				-0.2
3,307,865	-				-0.4
3,307,907	+				+0.9
3,307,907	+				-0.3
3,307,908	-				+0.3
3,307,912	+				+0.2
3,308,031	+		Sama_2767	0.28	+0.3
3,308,031	+		Sama_2767	0.28	-0.8
3,308,031	+		Sama_2767	0.28	+0.6
3,308,031	+		Sama_2767	0.28	+0.9
3,308,031	+		Sama_2767	0.28	+1.4
3,308,032	-		Sama_2767	0.28	-0.1
3,308,032	-		Sama_2767	0.28	+1.3
3,308,032	-		Sama_2767	0.28	-0.1
3,308,032	-		Sama_2767	0.28	+0.2
3,308,032	-		Sama_2767	0.28	+0.2
3,308,032	-		Sama_2767	0.28	-0.0
3,308,032	-		Sama_2767	0.28	+0.3
3,308,032	-		Sama_2767	0.28	+1.4
3,308,032	-		Sama_2767	0.28	-0.9
3,308,032	-		Sama_2767	0.28	-0.1
3,308,032	-		Sama_2767	0.28	-1.6
3,308,063	+		Sama_2767	0.35	-0.2
3,308,064	-		Sama_2767	0.36	+0.6
3,308,064	-		Sama_2767	0.36	-0.2
3,308,098	+		Sama_2767	0.44	-2.1
3,308,278	+		Sama_2767	0.86	-0.4
3,308,278	+		Sama_2767	0.86	+0.0
3,308,278	+		Sama_2767	0.86	-0.2
3,308,278	+		Sama_2767	0.86	+0.0
3,308,278	+		Sama_2767	0.86	+1.9
3,308,278	+		Sama_2767	0.86	+0.6
3,308,278	+		Sama_2767	0.86	+0.3
3,308,279	-		Sama_2767	0.87	+0.8
3,308,279	-		Sama_2767	0.87	-0.6
3,308,322	+				+0.3
3,308,356	+				+0.0
3,308,356	+				+1.2
3,308,414	+				+0.1
3,308,442	+				+0.3
3,308,443	-				-0.7
3,308,469	+				+0.9
3,308,470	-				+0.0
3,308,470	-				-1.5
3,308,470	-				-0.1
3,308,470	-				-0.0
3,308,489	+				+0.2
3,308,489	+				+0.4
3,308,490	-				+1.3
3,308,562	+				+0.5
3,308,562	+				+0.3
3,308,562	+				+0.3
3,308,562	+				-0.9
3,308,563	-				-0.2
3,308,563	-				-1.6
3,308,563	-				+0.2
3,308,565	-				+0.2
3,308,565	-				+1.4
3,308,565	-				+0.2
3,308,575	-				+0.7