Strain Fitness in Shewanella amazonensis SB2B around Sama_2763

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,303,947	-		Sama_2762	0.55	-0.3
3,303,954	-		Sama_2762	0.56	+0.3
3,303,954	-		Sama_2762	0.56	+0.6
3,303,966	+		Sama_2762	0.56	-0.5
3,303,966	+		Sama_2762	0.56	-1.3
3,303,967	-		Sama_2762	0.56	+0.0
3,303,985	+		Sama_2762	0.57	-1.0
3,304,114	+		Sama_2762	0.64	+0.2
3,304,115	-		Sama_2762	0.64	+1.2
3,304,147	-		Sama_2762	0.65	-1.1
3,304,199	+		Sama_2762	0.68	+0.2
3,304,199	+		Sama_2762	0.68	+0.3
3,304,199	+		Sama_2762	0.68	+1.1
3,304,199	+		Sama_2762	0.68	+0.3
3,304,200	-		Sama_2762	0.68	+0.2
3,304,244	+		Sama_2762	0.70	-0.3
3,304,244	+		Sama_2762	0.70	-0.4
3,304,345	+		Sama_2762	0.75	-0.4
3,304,345	+		Sama_2762	0.75	+1.4
3,304,345	+		Sama_2762	0.75	-0.7
3,304,345	+		Sama_2762	0.75	-0.0
3,304,345	+		Sama_2762	0.75	+0.3
3,304,345	+		Sama_2762	0.75	+0.1
3,304,345	+		Sama_2762	0.75	-1.4
3,304,345	+		Sama_2762	0.75	-0.5
3,304,345	+		Sama_2762	0.75	+0.2
3,304,345	+		Sama_2762	0.75	-2.4
3,304,346	-		Sama_2762	0.75	-0.3
3,304,346	-		Sama_2762	0.75	+0.5
3,304,346	-		Sama_2762	0.75	-0.3
3,304,347	+		Sama_2762	0.75	-1.1
3,304,347	+		Sama_2762	0.75	+0.6
3,304,347	+		Sama_2762	0.75	-0.2
3,304,347	+		Sama_2762	0.75	+0.8
3,304,347	+		Sama_2762	0.75	+1.5
3,304,347	+		Sama_2762	0.75	+0.7
3,304,347	+		Sama_2762	0.75	-0.9
3,304,347	+		Sama_2762	0.75	+0.1
3,304,348	-		Sama_2762	0.75	-0.7
3,304,348	-		Sama_2762	0.75	-0.2
3,304,348	-		Sama_2762	0.75	-0.1
3,304,348	-		Sama_2762	0.75	-0.2
3,304,366	+		Sama_2762	0.76	-0.8
3,304,366	+		Sama_2762	0.76	-0.0
3,304,366	+		Sama_2762	0.76	-1.1
3,304,367	-		Sama_2762	0.76	+0.5
3,304,367	-		Sama_2762	0.76	+0.9
3,304,367	-		Sama_2762	0.76	+0.0
3,304,367	-		Sama_2762	0.76	+0.8
3,304,393	-		Sama_2762	0.77	+0.2
3,304,420	+		Sama_2762	0.79	-0.8
3,304,420	+		Sama_2762	0.79	+0.7
3,304,420	+		Sama_2762	0.79	+0.2
3,304,420	+		Sama_2762	0.79	+1.6
3,304,420	+		Sama_2762	0.79	+0.6
3,304,420	+		Sama_2762	0.79	+0.7
3,304,421	-		Sama_2762	0.79	-1.1
3,304,421	-		Sama_2762	0.79	+1.8
3,304,421	-		Sama_2762	0.79	+0.4
3,304,421	-		Sama_2762	0.79	+0.3
3,304,421	-		Sama_2762	0.79	+0.4
3,304,421	-		Sama_2762	0.79	+0.5
3,304,421	-		Sama_2762	0.79	-0.7
3,304,439	+		Sama_2762	0.80	-1.1
3,304,459	-		Sama_2762	0.81	-0.7
3,304,459	-		Sama_2762	0.81	+1.2
3,304,459	-		Sama_2762	0.81	+0.2
3,304,478	+		Sama_2762	0.81	+0.2
3,304,478	+		Sama_2762	0.81	+0.5
3,304,478	+		Sama_2762	0.81	+0.2
3,304,478	+		Sama_2762	0.81	+0.7
3,304,478	+		Sama_2762	0.81	+0.2
3,304,479	-		Sama_2762	0.81	-0.8
3,304,479	-		Sama_2762	0.81	-0.5
3,304,479	-		Sama_2762	0.81	-2.8
3,304,479	-		Sama_2762	0.81	-1.8
3,304,515	+		Sama_2762	0.83	+0.2
3,304,515	+		Sama_2762	0.83	+0.9
3,304,516	-		Sama_2762	0.83	-0.8
3,304,604	-		Sama_2762	0.88	+0.2
3,304,604	-		Sama_2762	0.88	+1.5
3,304,611	+		Sama_2762	0.88	-1.0
3,304,627	-		Sama_2762	0.89	-0.9
3,304,679	+				-0.0
3,304,679	+				-0.3
3,304,679	+				+1.2
3,304,679	+				+0.0
3,304,680	-				-0.2
3,304,680	-				-0.1
3,304,680	-				-0.3
3,304,680	-				+0.3
3,304,680	-				-2.1
3,304,680	-				+2.2
3,304,680	-				-0.2
3,304,680	-				+0.2
3,304,680	-				+0.2
3,304,707	+				-1.4
3,304,707	+				+1.4
3,304,707	+				+0.5
3,304,707	+				+0.3
3,304,707	+				-0.3
3,304,707	+				-0.1
3,304,707	+				-0.2
3,304,708	-				+1.2
3,304,708	-				+0.6
3,304,708	-				-0.6
3,304,708	-				+0.6
3,304,708	-				+0.6
3,304,708	-				+0.7
3,304,743	-				-0.1
3,304,771	+				-0.3
3,304,772	-				-0.0
3,304,772	-				+0.2
3,304,785	-				+0.1
3,304,856	-				+0.7
3,304,856	-				+0.5
3,304,856	-				+0.9
3,304,856	-				-2.3
3,304,856	-				-0.2
3,304,865	+				+0.0
3,304,866	-				-1.6
3,304,866	-				-0.7
3,304,871	-				+0.2
3,304,871	-				-0.5
3,304,883	+				+1.8
3,304,887	+				-0.6
3,304,888	-				+0.4
3,304,894	-				+1.8
3,304,957	+				-0.5
3,305,057	+		Sama_2763	0.22	-0.6
3,305,095	-		Sama_2763	0.29	-0.3
3,305,095	-		Sama_2763	0.29	-0.5
3,305,095	-		Sama_2763	0.29	+0.1
3,305,095	-		Sama_2763	0.29	+0.3
3,305,141	+		Sama_2763	0.37	-0.9
3,305,162	-		Sama_2763	0.41	+0.5
3,305,162	-		Sama_2763	0.41	-0.8
3,305,269	+		Sama_2763	0.61	+1.7
3,305,357	+		Sama_2763	0.76	-0.2
3,305,358	-		Sama_2763	0.77	+0.4
3,305,358	-		Sama_2763	0.77	+0.5
3,305,375	+		Sama_2763	0.80	-0.4
3,305,376	-		Sama_2763	0.80	-0.4
3,305,376	-		Sama_2763	0.80	-0.7
3,305,376	-		Sama_2763	0.80	+0.9
3,305,376	-		Sama_2763	0.80	+1.5
3,305,403	-		Sama_2763	0.85	+0.2
3,305,442	+				+0.8
3,305,443	-				-0.8
3,305,443	-				-0.2
3,305,456	+				-1.1
3,305,456	+				+0.1
3,305,456	+				-0.5
3,305,456	+				-1.3
3,305,457	-				-0.8
3,305,457	-				+0.5
3,305,457	-				-0.0
3,305,479	-				-1.0
3,305,515	+				-0.5
3,305,515	+				-0.2
3,305,515	+				+0.5
3,305,515	+				+1.0
3,305,515	+				-0.9
3,305,515	+				+0.0
3,305,516	-				+0.5
3,305,516	-				+0.7
3,305,517	+				-0.1
3,305,517	+				-1.7
3,305,517	+				-0.8
3,305,518	-				-0.2
3,305,518	-				-0.5
3,305,518	-				-0.4
3,305,528	-				-0.9
3,305,528	-				-0.2
3,305,563	+				+0.1
3,305,564	-				+0.8
3,305,564	-				+1.6
3,305,596	+				-0.8
3,305,596	+				+1.0
3,305,596	+				-1.4
3,305,596	+				-0.8
3,305,596	+				+0.3
3,305,597	-				-1.1
3,305,597	-				-2.1
3,305,597	-				+0.4
3,305,597	-				-0.3
3,305,597	-				+0.8
3,305,597	-				+0.5
3,305,628	+				-0.2
3,305,628	+				+0.6
3,305,628	+				-0.4
3,305,628	+				-1.3
3,305,628	+				-0.4
3,305,628	+				+0.5
3,305,628	+				-0.4
3,305,628	+				+0.1
3,305,629	-				-0.3
3,305,629	-				+1.4
3,305,629	-				-0.3
3,305,629	-				-0.0
3,305,688	+				+0.5
3,305,721	+				+0.1
3,305,721	+				+0.1
3,305,721	+				+0.8
3,305,721	+				+0.7
3,305,721	+				+0.5
3,305,722	-				-0.1
3,305,722	-				-1.7
3,305,722	-				-0.7
3,305,722	-				+0.7
3,305,731	+		Sama_2764	0.10	+1.2
3,305,734	+		Sama_2764	0.11	+0.6
3,305,734	+		Sama_2764	0.11	+0.2
3,305,735	-		Sama_2764	0.11	-2.3
3,305,746	+		Sama_2764	0.12	+0.6
3,305,746	+		Sama_2764	0.12	-1.9
3,305,746	+		Sama_2764	0.12	+0.2
3,305,747	-		Sama_2764	0.12	+0.7
3,305,747	-		Sama_2764	0.12	+0.5
3,305,747	-		Sama_2764	0.12	+0.4
3,305,747	-		Sama_2764	0.12	-0.2
3,305,747	-		Sama_2764	0.12	+1.1
3,305,750	+		Sama_2764	0.12	-0.3
3,305,750	+		Sama_2764	0.12	-0.7
3,305,750	+		Sama_2764	0.12	-0.7
3,305,750	+		Sama_2764	0.12	-0.0
3,305,750	+		Sama_2764	0.12	-0.8
3,305,750	+		Sama_2764	0.12	+0.1
3,305,751	-		Sama_2764	0.12	+0.6
3,305,751	-		Sama_2764	0.12	-1.8
3,305,751	-		Sama_2764	0.12	+1.2
3,305,751	-		Sama_2764	0.12	-0.2
3,305,751	-		Sama_2764	0.12	-0.3
3,305,751	-		Sama_2764	0.12	-0.8
3,305,751	-		Sama_2764	0.12	-1.4
3,305,751	-		Sama_2764	0.12	+1.0
3,305,751	-		Sama_2764	0.12	+0.9
3,305,820	+		Sama_2764	0.20	+0.1
3,305,821	-		Sama_2764	0.20	+1.2
3,305,821	-		Sama_2764	0.20	+2.8
3,305,821	-		Sama_2764	0.20	-1.1
3,305,903	+		Sama_2764	0.28	+2.8
3,305,911	+		Sama_2764	0.29	-0.2
3,305,911	+		Sama_2764	0.29	+0.7
3,305,912	-		Sama_2764	0.29	-0.0
3,305,927	+		Sama_2764	0.30	-0.4
3,305,927	+		Sama_2764	0.30	+1.0
3,305,927	+		Sama_2764	0.30	+0.8
3,305,927	+		Sama_2764	0.30	-0.7
3,305,928	-		Sama_2764	0.31	+0.4
3,305,928	-		Sama_2764	0.31	+1.9
3,306,011	+		Sama_2764	0.39	-0.2
3,306,011	+		Sama_2764	0.39	+0.4
3,306,012	-		Sama_2764	0.39	+0.0
3,306,012	-		Sama_2764	0.39	-0.6
3,306,029	+		Sama_2764	0.41	+0.8
3,306,044	+		Sama_2764	0.42	-0.4
3,306,046	-		Sama_2764	0.43	+1.2
3,306,141	+		Sama_2764	0.52	+0.4
3,306,158	+		Sama_2764	0.54	+0.1
3,306,158	+		Sama_2764	0.54	+0.9
3,306,159	-		Sama_2764	0.54	-0.3
3,306,175	-		Sama_2764	0.56	+0.2
3,306,175	-		Sama_2764	0.56	+0.5
3,306,197	+		Sama_2764	0.58	+0.3
3,306,311	+		Sama_2764	0.70	-2.1
3,306,311	+		Sama_2764	0.70	-1.6
3,306,311	+		Sama_2764	0.70	-0.6
3,306,312	-		Sama_2764	0.70	-0.5
3,306,312	-		Sama_2764	0.70	+0.3
3,306,312	-		Sama_2764	0.70	+0.9
3,306,349	+		Sama_2764	0.74	+0.0
3,306,350	-		Sama_2764	0.74	-0.1
3,306,350	-		Sama_2764	0.74	+0.1
3,306,350	-		Sama_2764	0.74	-0.2
3,306,357	+		Sama_2764	0.74	-0.1
3,306,357	+		Sama_2764	0.74	-0.2
3,306,358	-		Sama_2764	0.75	-0.5
3,306,358	-		Sama_2764	0.75	-0.5
3,306,402	+		Sama_2764	0.79	-1.5
3,306,403	-		Sama_2764	0.79	-0.5
3,306,403	-		Sama_2764	0.79	+0.4
3,306,403	-		Sama_2764	0.79	-0.2
3,306,408	+		Sama_2764	0.80	+0.5
3,306,408	+		Sama_2764	0.80	+0.2
3,306,408	+		Sama_2764	0.80	+0.7
3,306,408	+		Sama_2764	0.80	-0.3
3,306,409	-		Sama_2764	0.80	+0.2
3,306,409	-		Sama_2764	0.80	-1.6
3,306,409	-		Sama_2764	0.80	+0.5
3,306,410	+		Sama_2764	0.80	-0.4
3,306,410	+		Sama_2764	0.80	+0.9
3,306,410	+		Sama_2764	0.80	-0.8
3,306,410	+		Sama_2764	0.80	-0.3
3,306,410	+		Sama_2764	0.80	+0.1
3,306,411	-		Sama_2764	0.80	-0.6
3,306,411	-		Sama_2764	0.80	+0.7
3,306,411	-		Sama_2764	0.80	-0.4
3,306,411	-		Sama_2764	0.80	-0.8
3,306,411	-		Sama_2764	0.80	+1.2
3,306,411	-		Sama_2764	0.80	-1.1
3,306,411	-		Sama_2764	0.80	+0.2
3,306,411	-		Sama_2764	0.80	+1.0
3,306,411	-		Sama_2764	0.80	-0.8
3,306,411	-		Sama_2764	0.80	+0.1
3,306,466	+		Sama_2764	0.86	+0.4