Strain Fitness in Shewanella amazonensis SB2B around Sama_2716

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,248,719	+				+0.1
3,248,719	+				-0.3
3,248,719	+				-0.2
3,248,719	+				+0.1
3,248,719	+				+0.6
3,248,719	+				+0.2
3,248,719	+				+0.0
3,248,719	+				-0.1
3,248,719	+				+0.2
3,248,719	+				-1.1
3,248,719	+				-0.2
3,248,720	-				+0.3
3,248,720	-				+0.1
3,248,720	-				+0.9
3,248,720	-				-1.1
3,248,720	-				+0.2
3,248,720	-				+0.1
3,248,720	-				+0.0
3,248,720	-				+0.3
3,248,720	-				-0.1
3,248,720	-				+0.4
3,248,720	-				+0.8
3,248,720	-				+0.5
3,248,720	-				-0.0
3,248,720	-				-0.5
3,248,720	-				+0.2
3,248,720	-				-0.4
3,248,720	-				-0.2
3,248,720	-				+0.6
3,248,721	+				-0.8
3,248,721	+				+2.2
3,248,721	+				+0.1
3,248,721	+				-0.5
3,248,721	+				+0.4
3,248,721	+				-2.1
3,248,721	+				-1.5
3,248,721	+				-0.3
3,248,721	+				-0.1
3,248,721	+				-0.8
3,248,721	+				+0.7
3,248,721	+				-0.7
3,248,721	+				-0.5
3,248,721	+				+0.5
3,248,721	+				+0.3
3,248,721	+				-0.8
3,248,721	+				-0.8
3,248,721	+				-0.6
3,248,721	+				-0.7
3,248,721	+				-0.6
3,248,721	+				+0.3
3,248,721	+				-1.0
3,248,721	+				-0.6
3,248,721	+				-0.8
3,248,721	+				+0.8
3,248,721	+				-0.5
3,248,721	+				+0.9
3,248,722	-				-0.3
3,248,722	-				-0.8
3,248,722	-				+0.4
3,248,722	-				-2.0
3,248,722	-				+0.6
3,248,722	-				-0.4
3,248,722	-				+0.3
3,248,722	-				+0.2
3,248,722	-				+0.2
3,248,722	-				+0.6
3,248,722	-				-1.6
3,248,722	-				+0.1
3,248,722	-				+1.3
3,248,722	-				-0.0
3,248,722	-				-0.1
3,248,722	-				+0.2
3,248,722	-				+0.6
3,248,725	+				+1.5
3,248,725	+				-0.1
3,248,725	+				-0.1
3,248,725	+				-0.7
3,248,725	+				-1.4
3,248,725	+				-1.4
3,248,725	+				+1.5
3,248,725	+				-0.7
3,248,725	+				+1.2
3,248,725	+				+1.7
3,248,726	-				-0.4
3,248,726	-				-0.7
3,248,726	-				+0.7
3,248,726	-				+0.6
3,248,726	-				+0.9
3,248,726	-				-0.0
3,248,933	+				-1.1
3,248,933	+				+0.5
3,248,934	-				-0.1
3,248,988	+				-1.0
3,248,989	-				-0.1
3,249,014	+				+0.2
3,249,014	+				-0.1
3,249,015	-				-1.3
3,249,015	-				-0.4
3,249,015	-				-0.3
3,249,015	-				-0.6
3,249,029	-				-0.2
3,249,029	-				-0.1
3,249,035	-				-0.5
3,249,109	+				-0.4
3,249,109	+				+0.3
3,249,187	+				+0.7
3,249,187	+				-0.1
3,249,187	+				-0.3
3,249,187	+				+0.9
3,249,187	+				+0.7
3,249,188	-				-0.7
3,249,188	-				-0.2
3,249,188	-				+0.3
3,249,188	-				+0.5
3,249,188	-				-1.4
3,249,188	-				-0.0
3,249,188	-				+0.4
3,249,189	+				-0.2
3,249,190	-				-0.3
3,249,197	+				-0.3
3,249,197	+				-0.3
3,249,197	+				-2.3
3,249,197	+				-0.7
3,249,198	-				-0.6
3,249,198	-				+0.9
3,249,236	-				-0.2
3,249,236	-				-0.3
3,249,236	-				+0.5
3,249,303	+				+0.3
3,249,419	-				+0.3
3,249,445	+				-2.1
3,249,446	-				+0.1
3,249,457	-				+0.8
3,249,479	-				-0.4
3,249,505	+				+0.8
3,249,650	+				+0.1
3,249,654	+				-0.2
3,249,655	-				+0.4
3,249,659	-				+0.4
3,249,794	-		Sama_2716	0.21	+0.1
3,249,818	-		Sama_2716	0.23	+0.2
3,249,859	-		Sama_2716	0.28	-0.5
3,249,889	-		Sama_2716	0.31	-1.4
3,249,892	-		Sama_2716	0.32	-0.5
3,249,892	-		Sama_2716	0.32	+0.9
3,250,055	-		Sama_2716	0.50	+0.6
3,250,067	+		Sama_2716	0.52	+1.3
3,250,068	-		Sama_2716	0.52	-0.2
3,250,085	+		Sama_2716	0.54	-0.3
3,250,085	+		Sama_2716	0.54	+0.5
3,250,108	+		Sama_2716	0.56	-0.5
3,250,118	+		Sama_2716	0.58	-0.6
3,250,130	-		Sama_2716	0.59	+0.7
3,250,133	-		Sama_2716	0.59	+0.6
3,250,139	+		Sama_2716	0.60	+0.2
3,250,140	-		Sama_2716	0.60	+0.3
3,250,145	+		Sama_2716	0.61	+0.9
3,250,146	-		Sama_2716	0.61	-1.8
3,250,166	+		Sama_2716	0.63	-1.4
3,250,167	-		Sama_2716	0.63	-0.1
3,250,167	-		Sama_2716	0.63	-0.2
3,250,167	-		Sama_2716	0.63	+0.4
3,250,211	+		Sama_2716	0.68	+0.9
3,250,211	+		Sama_2716	0.68	+0.9
3,250,212	-		Sama_2716	0.68	-2.2
3,250,212	-		Sama_2716	0.68	+1.6
3,250,212	-		Sama_2716	0.68	+0.2
3,250,212	-		Sama_2716	0.68	-0.1
3,250,212	-		Sama_2716	0.68	+0.9
3,250,256	-		Sama_2716	0.73	-0.5
3,250,351	+		Sama_2716	0.84	+0.3
3,250,352	-		Sama_2716	0.84	-0.2
3,250,364	+		Sama_2716	0.86	+0.2
3,250,369	+		Sama_2716	0.86	+0.1
3,250,369	+		Sama_2716	0.86	-0.6
3,250,369	+		Sama_2716	0.86	+0.5
3,250,370	-		Sama_2716	0.86	+1.5
3,250,381	+		Sama_2716	0.88	+0.6
3,250,381	+		Sama_2716	0.88	+0.8
3,250,382	-		Sama_2716	0.88	+0.2
3,250,382	-		Sama_2716	0.88	-0.3
3,250,382	-		Sama_2716	0.88	+0.2
3,250,382	-		Sama_2716	0.88	+1.4
3,250,397	-		Sama_2716	0.89	+1.0
3,250,397	-		Sama_2716	0.89	-1.4
3,250,397	-		Sama_2716	0.89	+0.6
3,250,397	-		Sama_2716	0.89	+0.6
3,250,423	+				+0.4
3,250,423	+				-0.8
3,250,424	-				-0.8
3,250,424	-				+1.0
3,250,424	-				-0.2
3,250,424	-				+0.2
3,250,424	-				-1.8
3,250,424	-				+0.3
3,250,424	-				-0.7
3,250,445	+				+0.4
3,250,466	+				+0.0
3,250,467	-				-0.2
3,250,467	-				+1.0
3,250,478	+				-0.6
3,250,519	-				-0.3
3,250,521	-				-1.3
3,250,541	+				+0.3
3,250,542	-				+0.5
3,250,547	+				+0.5
3,250,547	+				+0.4
3,250,548	-				-0.5
3,250,570	-				-0.1
3,250,622	-				+1.2
3,250,652	+		Sama_2717	0.16	-0.5
3,250,658	-		Sama_2717	0.18	+0.0
3,250,658	-		Sama_2717	0.18	+0.4
3,250,673	+		Sama_2717	0.22	-1.6
3,250,673	+		Sama_2717	0.22	+0.7
3,250,696	+		Sama_2717	0.29	+0.4
3,250,697	-		Sama_2717	0.29	+0.4
3,250,716	-		Sama_2717	0.34	-0.1
3,250,720	+		Sama_2717	0.35	-0.7
3,250,720	+		Sama_2717	0.35	+0.6
3,250,720	+		Sama_2717	0.35	-0.4
3,250,720	+		Sama_2717	0.35	+0.7
3,250,720	+		Sama_2717	0.35	-0.1
3,250,720	+		Sama_2717	0.35	+0.2
3,250,721	-		Sama_2717	0.36	+0.6
3,250,721	-		Sama_2717	0.36	+0.5
3,250,721	-		Sama_2717	0.36	+0.0
3,250,721	-		Sama_2717	0.36	+1.6
3,250,733	+		Sama_2717	0.39	+1.6
3,250,734	-		Sama_2717	0.39	-1.6
3,250,745	+		Sama_2717	0.42	+0.2
3,250,753	+		Sama_2717	0.44	-0.5
3,250,754	-		Sama_2717	0.45	+1.0
3,250,754	-		Sama_2717	0.45	-0.4
3,250,754	-		Sama_2717	0.45	+0.1
3,250,754	-		Sama_2717	0.45	-0.6
3,250,768	+		Sama_2717	0.49	-0.3
3,250,768	+		Sama_2717	0.49	-0.3
3,250,772	+		Sama_2717	0.50	-3.0
3,250,773	-		Sama_2717	0.50	+0.0
3,250,781	-		Sama_2717	0.52	-0.6
3,250,792	+		Sama_2717	0.55	+0.6
3,250,792	+		Sama_2717	0.55	-0.3
3,250,793	-		Sama_2717	0.56	+0.4
3,250,793	-		Sama_2717	0.56	+0.5
3,250,844	+		Sama_2717	0.70	+0.0
3,250,844	+		Sama_2717	0.70	-2.2
3,250,845	-		Sama_2717	0.70	+0.1
3,250,845	-		Sama_2717	0.70	+0.2
3,250,847	+		Sama_2717	0.71	+0.6
3,250,847	+		Sama_2717	0.71	+0.1
3,250,847	+		Sama_2717	0.71	-0.1
3,250,848	-		Sama_2717	0.71	-0.1
3,250,857	+		Sama_2717	0.73	+0.0
3,250,859	+		Sama_2717	0.74	+0.1
3,250,910	-		Sama_2717	0.88	-0.1
3,250,912	+		Sama_2717	0.89	+0.2
3,250,912	+		Sama_2717	0.89	-0.0
3,250,912	+		Sama_2717	0.89	+0.2
3,250,913	-		Sama_2717	0.89	+0.4
3,250,916	+		Sama_2717	0.90	-0.1
3,250,917	-				-0.5
3,250,925	+				-0.1
3,250,947	-				-1.4
3,251,038	-		Sama_2718	0.11	+0.2
3,251,041	+		Sama_2718	0.11	+1.1
3,251,042	-		Sama_2718	0.12	-0.7
3,251,047	-		Sama_2718	0.12	-0.4
3,251,082	+		Sama_2718	0.17	-1.4
3,251,145	+		Sama_2718	0.24	-0.5
3,251,224	+		Sama_2718	0.34	+0.5
3,251,225	-		Sama_2718	0.34	-0.1
3,251,228	-		Sama_2718	0.35	+0.4
3,251,346	+		Sama_2718	0.50	-0.7
3,251,404	+		Sama_2718	0.57	-0.2
3,251,406	+		Sama_2718	0.57	-0.1
3,251,473	-		Sama_2718	0.65	-0.6
3,251,473	-		Sama_2718	0.65	+0.9