Strain Fitness in Shewanella amazonensis SB2B around Sama_2560

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,065,684	+		Sama_2558	0.88	+0.1
3,065,684	+		Sama_2558	0.88	+0.6
3,065,684	+		Sama_2558	0.88	+0.9
3,065,684	+		Sama_2558	0.88	-0.1
3,065,686	+		Sama_2558	0.89	-0.7
3,065,686	+		Sama_2558	0.89	-0.2
3,065,686	+		Sama_2558	0.89	+0.4
3,065,689	+				-0.6
3,065,689	+				+0.4
3,065,689	+				+0.1
3,065,689	+				+1.0
3,065,693	+				-1.4
3,066,639	+				+0.1
3,066,639	+				+0.5
3,066,640	-				+0.9
3,066,640	-				-1.1
3,066,676	+				-1.5
3,066,701	+				+0.1
3,066,702	-				+1.6
3,066,702	-				+0.7
3,066,723	+				+1.1
3,066,724	-				+0.1
3,066,745	+		Sama_2560	0.12	+0.2
3,066,745	+		Sama_2560	0.12	-0.3
3,066,745	+		Sama_2560	0.12	-1.3
3,066,746	-		Sama_2560	0.12	+0.4
3,066,884	+		Sama_2560	0.28	+0.2
3,066,884	+		Sama_2560	0.28	-0.2
3,066,885	-		Sama_2560	0.28	-1.5
3,067,058	+		Sama_2560	0.48	+0.6
3,067,058	+		Sama_2560	0.48	+1.1
3,067,108	+		Sama_2560	0.54	-0.8
3,067,109	-		Sama_2560	0.54	-0.7
3,067,109	-		Sama_2560	0.54	+0.2
3,067,109	-		Sama_2560	0.54	-0.6
3,067,109	-		Sama_2560	0.54	-0.0
3,067,133	+		Sama_2560	0.57	+0.6
3,067,134	-		Sama_2560	0.57	+1.9
3,067,306	+		Sama_2560	0.76	+0.8
3,067,307	-		Sama_2560	0.76	+0.0
3,067,359	+		Sama_2560	0.82	+0.3
3,067,360	-		Sama_2560	0.82	+0.5
3,067,375	-		Sama_2560	0.84	+0.4
3,067,375	-		Sama_2560	0.84	+1.1
3,067,398	+		Sama_2560	0.87	-0.4
3,067,480	+				+0.1
3,067,513	+				+0.3
3,067,513	+				+0.2
3,067,513	+				+0.2
3,067,513	+				+0.9
3,067,514	-				+0.0
3,067,514	-				-0.4
3,067,514	-				+0.2
3,067,514	-				-0.0
3,067,514	-				-0.7
3,067,533	+				-0.9
3,067,534	-				-0.6
3,067,576	+				-0.5
3,067,602	+				-1.0
3,067,603	-				-0.7