Strain Fitness in Shewanella amazonensis SB2B around Sama_2558

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,064,376	+		Sama_2556	0.79	+0.8
3,064,376	+		Sama_2556	0.79	-0.2
3,064,377	-		Sama_2556	0.79	-0.2
3,064,377	-		Sama_2556	0.79	-0.2
3,064,377	-		Sama_2556	0.79	+0.4
3,064,377	-		Sama_2556	0.79	+0.2
3,064,377	-		Sama_2556	0.79	-0.7
3,064,380	+		Sama_2556	0.80	+0.5
3,064,380	+		Sama_2556	0.80	-0.4
3,064,380	+		Sama_2556	0.80	+0.9
3,064,381	-		Sama_2556	0.80	+0.1
3,064,381	-		Sama_2556	0.80	-0.0
3,064,381	-		Sama_2556	0.80	+0.1
3,064,381	-		Sama_2556	0.80	+1.3
3,064,421	-		Sama_2556	0.83	+0.1
3,064,463	-		Sama_2556	0.86	+1.1
3,064,463	-		Sama_2556	0.86	+0.2
3,064,503	+		Sama_2556	0.88	+0.1
3,064,503	+		Sama_2556	0.88	+1.0
3,064,504	-		Sama_2556	0.88	-1.8
3,064,544	-				-0.8
3,064,581	-				-1.2
3,064,598	+				+1.1
3,064,598	+				-0.8
3,064,598	+				-0.2
3,064,675	+				-0.1
3,064,675	+				-0.7
3,064,676	-				+0.4
3,064,676	-				+0.6
3,064,742	-		Sama_2557	0.13	-0.3
3,064,742	-		Sama_2557	0.13	+0.4
3,064,828	+		Sama_2557	0.31	+1.3
3,064,828	+		Sama_2557	0.31	+1.1
3,064,828	+		Sama_2557	0.31	-1.9
3,064,865	+		Sama_2557	0.38	+0.5
3,064,866	-		Sama_2557	0.38	-1.4
3,064,866	-		Sama_2557	0.38	+0.7
3,064,866	-		Sama_2557	0.38	-0.7
3,064,917	-		Sama_2557	0.49	+1.1
3,065,035	+		Sama_2557	0.73	+0.1
3,065,036	-		Sama_2557	0.73	-0.2
3,065,036	-		Sama_2557	0.73	+0.2
3,065,055	+		Sama_2557	0.77	-1.2
3,065,056	-		Sama_2557	0.78	+0.0
3,065,056	-		Sama_2557	0.78	-0.6
3,065,056	-		Sama_2557	0.78	+0.3
3,065,149	+				-2.1
3,065,150	-				-0.9
3,065,150	-				-0.3
3,065,150	-				-1.3
3,065,150	-				+0.9
3,065,228	+				+0.4
3,065,229	-				+0.4
3,065,233	+				+0.7
3,065,233	+				-0.4
3,065,233	+				+0.1
3,065,234	-				+1.1
3,065,234	-				+0.4
3,065,234	-				+0.1
3,065,234	-				-0.2
3,065,290	+				-0.3
3,065,339	+				+0.4
3,065,413	+		Sama_2558	0.14	+0.5
3,065,413	+		Sama_2558	0.14	+0.7
3,065,413	+		Sama_2558	0.14	+0.7
3,065,423	+		Sama_2558	0.17	+0.8
3,065,543	+		Sama_2558	0.50	+0.5
3,065,543	+		Sama_2558	0.50	-0.8
3,065,543	+		Sama_2558	0.50	+0.7
3,065,543	+		Sama_2558	0.50	+0.3
3,065,543	+		Sama_2558	0.50	-0.2
3,065,543	+		Sama_2558	0.50	-0.3
3,065,684	+		Sama_2558	0.88	+0.1
3,065,684	+		Sama_2558	0.88	+0.6
3,065,684	+		Sama_2558	0.88	+0.9
3,065,684	+		Sama_2558	0.88	-0.1
3,065,686	+		Sama_2558	0.89	-0.7
3,065,686	+		Sama_2558	0.89	-0.2
3,065,686	+		Sama_2558	0.89	+0.4
3,065,689	+				-0.6
3,065,689	+				+0.4
3,065,689	+				+0.1
3,065,689	+				+1.0
3,065,693	+				-1.4
3,066,639	+				+0.1
3,066,639	+				+0.5
3,066,640	-				+0.9
3,066,640	-				-1.1
3,066,676	+				-1.5
3,066,701	+				+0.1
3,066,702	-				+1.6
3,066,702	-				+0.7
3,066,723	+				+1.1
3,066,724	-				+0.1