Strain Fitness in Shewanella amazonensis SB2B around Sama_2521

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,028,719	+		Sama_2520	0.19	-0.8
3,028,719	+		Sama_2520	0.19	+0.5
3,028,719	+		Sama_2520	0.19	+1.1
3,028,719	+		Sama_2520	0.19	-0.5
3,028,720	-		Sama_2520	0.20	-1.3
3,028,720	-		Sama_2520	0.20	-0.7
3,028,720	-		Sama_2520	0.20	-0.6
3,028,720	-		Sama_2520	0.20	-0.2
3,028,720	-		Sama_2520	0.20	+1.0
3,028,723	+		Sama_2520	0.20	-1.1
3,028,724	-		Sama_2520	0.20	-0.6
3,028,724	-		Sama_2520	0.20	+0.3
3,028,724	-		Sama_2520	0.20	-0.5
3,028,724	-		Sama_2520	0.20	+0.2
3,028,724	-		Sama_2520	0.20	-1.4
3,028,757	+		Sama_2520	0.24	-2.1
3,028,757	+		Sama_2520	0.24	-0.8
3,028,757	+		Sama_2520	0.24	+0.5
3,028,757	+		Sama_2520	0.24	-0.5
3,028,757	+		Sama_2520	0.24	-0.0
3,028,757	+		Sama_2520	0.24	-1.2
3,028,758	-		Sama_2520	0.24	-1.5
3,028,758	-		Sama_2520	0.24	-0.7
3,028,759	+		Sama_2520	0.24	-2.7
3,028,759	+		Sama_2520	0.24	-0.0
3,028,759	+		Sama_2520	0.24	-1.2
3,028,759	+		Sama_2520	0.24	-1.1
3,028,759	+		Sama_2520	0.24	-0.2
3,028,759	+		Sama_2520	0.24	-0.7
3,028,759	+		Sama_2520	0.24	+0.3
3,028,759	+		Sama_2520	0.24	-0.1
3,028,759	+		Sama_2520	0.24	-0.7
3,028,759	+		Sama_2520	0.24	+1.5
3,028,759	+		Sama_2520	0.24	-0.7
3,028,759	+		Sama_2520	0.24	+0.1
3,028,759	+		Sama_2520	0.24	-0.3
3,028,759	+		Sama_2520	0.24	-0.2
3,028,759	+		Sama_2520	0.24	-1.4
3,028,760	-		Sama_2520	0.24	+0.1
3,028,760	-		Sama_2520	0.24	+0.1
3,028,760	-		Sama_2520	0.24	+0.4
3,028,760	-		Sama_2520	0.24	-1.0
3,028,760	-		Sama_2520	0.24	-0.5
3,028,760	-		Sama_2520	0.24	-0.5
3,028,760	-		Sama_2520	0.24	-0.3
3,028,760	-		Sama_2520	0.24	-0.6
3,028,814	+		Sama_2520	0.30	+0.2
3,028,814	+		Sama_2520	0.30	-0.4
3,028,881	-		Sama_2520	0.37	-1.4
3,028,881	-		Sama_2520	0.37	-0.4
3,028,908	+		Sama_2520	0.40	+0.3
3,028,944	-		Sama_2520	0.44	-1.8
3,028,967	-		Sama_2520	0.47	-1.2
3,028,967	-		Sama_2520	0.47	-0.5
3,028,974	+		Sama_2520	0.48	-0.2
3,028,984	+		Sama_2520	0.49	-0.3
3,028,984	+		Sama_2520	0.49	-0.4
3,028,984	+		Sama_2520	0.49	-0.9
3,028,984	+		Sama_2520	0.49	+0.1
3,028,985	-		Sama_2520	0.49	+0.2
3,028,985	-		Sama_2520	0.49	-0.4
3,028,985	-		Sama_2520	0.49	-0.8
3,028,985	-		Sama_2520	0.49	-1.8
3,028,985	-		Sama_2520	0.49	+0.5
3,028,985	-		Sama_2520	0.49	+0.2
3,028,985	-		Sama_2520	0.49	-0.9
3,028,985	-		Sama_2520	0.49	-1.1
3,029,045	+		Sama_2520	0.55	+2.1
3,029,045	+		Sama_2520	0.55	-0.6
3,029,045	+		Sama_2520	0.55	+0.5
3,029,046	-		Sama_2520	0.55	+0.1
3,029,057	+		Sama_2520	0.57	-1.0
3,029,134	+		Sama_2520	0.65	-0.9
3,029,134	+		Sama_2520	0.65	-0.1
3,029,135	-		Sama_2520	0.65	-1.2
3,029,135	-		Sama_2520	0.65	-2.2
3,029,135	-		Sama_2520	0.65	-1.2
3,029,135	-		Sama_2520	0.65	+0.5
3,029,135	-		Sama_2520	0.65	-1.2
3,029,135	-		Sama_2520	0.65	-0.7
3,029,135	-		Sama_2520	0.65	-0.2
3,029,358	-		Sama_2520	0.90	-1.9
3,029,480	+				+0.2
3,029,481	-				-0.6
3,029,481	-				+0.3
3,029,518	+				-0.1
3,029,518	+				-1.1
3,029,519	-				-1.5
3,029,519	-				-1.2
3,029,529	+				-0.1
3,029,529	+				+0.9
3,029,584	+				+0.7
3,029,585	-				-0.5
3,029,593	+				-0.6
3,029,593	+				+0.2
3,029,593	+				-0.1
3,029,593	+				+2.4
3,029,593	+				+0.1
3,029,593	+				-0.6
3,029,593	+				-0.3
3,029,593	+				+0.7
3,029,594	-				-0.2
3,029,618	+				+1.1
3,029,632	-				+0.7
3,029,632	-				-0.9
3,029,684	+				-0.4
3,029,684	+				+0.6
3,029,685	-				-0.4
3,029,686	+				+0.1
3,029,686	+				-0.5
3,029,686	+				+0.2
3,029,687	-				-1.6
3,029,687	-				-0.3
3,029,687	-				-0.5
3,029,687	-				+0.8
3,029,687	-				+1.1
3,029,687	-				+0.1
3,029,687	-				-1.1
3,029,908	+		Sama_2521	0.21	-2.2
3,029,943	+		Sama_2521	0.24	+0.3
3,029,986	+		Sama_2521	0.28	-1.5
3,030,046	+		Sama_2521	0.33	-0.3
3,030,077	+		Sama_2521	0.36	+0.4
3,030,157	+		Sama_2521	0.43	-0.4
3,030,177	+		Sama_2521	0.45	-0.5
3,030,177	+		Sama_2521	0.45	-1.1
3,030,177	+		Sama_2521	0.45	+1.4
3,030,177	+		Sama_2521	0.45	+1.4
3,030,202	+		Sama_2521	0.47	-1.0
3,030,202	+		Sama_2521	0.47	-0.2
3,030,294	+		Sama_2521	0.55	-1.1
3,030,294	+		Sama_2521	0.55	+0.7
3,030,304	+		Sama_2521	0.56	+0.1
3,030,326	+		Sama_2521	0.58	-0.1
3,030,326	+		Sama_2521	0.58	-1.3
3,030,326	+		Sama_2521	0.58	-1.5
3,030,326	+		Sama_2521	0.58	+0.3
3,030,326	+		Sama_2521	0.58	-0.8
3,030,326	+		Sama_2521	0.58	-1.2
3,030,326	+		Sama_2521	0.58	-1.9
3,030,328	+		Sama_2521	0.58	-1.9
3,030,328	+		Sama_2521	0.58	-1.4
3,030,349	+		Sama_2521	0.60	-0.5
3,030,425	+		Sama_2521	0.67	-1.0
3,030,524	+		Sama_2521	0.76	-0.2
3,030,524	+		Sama_2521	0.76	+0.1
3,030,524	+		Sama_2521	0.76	+0.7
3,030,525	-		Sama_2521	0.76	+1.6
3,030,605	+		Sama_2521	0.83	-1.1
3,030,605	+		Sama_2521	0.83	-0.8
3,030,605	+		Sama_2521	0.83	-1.7
3,030,605	+		Sama_2521	0.83	-0.7
3,030,605	+		Sama_2521	0.83	+0.1
3,030,605	+		Sama_2521	0.83	-1.0
3,030,707	+				-0.2
3,030,769	+				+0.9
3,030,825	+				-0.8
3,030,825	+				-0.3
3,030,831	+				-0.5
3,030,842	+				-2.4
3,030,912	+				-1.1
3,030,919	+				-0.6
3,030,940	+				-0.4
3,030,940	+				-1.6
3,030,940	+				-1.8
3,030,983	+				-1.8
3,030,983	+				-1.6
3,030,983	+				-0.2
3,030,983	+				-2.9
3,030,983	+				-2.6
3,030,983	+				-0.6
3,031,072	+		Sama_2522	0.14	-1.5
3,031,090	+		Sama_2522	0.15	-2.2
3,031,090	+		Sama_2522	0.15	-1.3
3,031,090	+		Sama_2522	0.15	-1.3
3,031,090	+		Sama_2522	0.15	-1.3
3,031,090	+		Sama_2522	0.15	-1.2
3,031,090	+		Sama_2522	0.15	-0.9
3,031,091	-		Sama_2522	0.15	-1.2
3,031,215	+		Sama_2522	0.22	+0.3
3,031,215	+		Sama_2522	0.22	-0.7
3,031,255	+		Sama_2522	0.25	-2.1
3,031,255	+		Sama_2522	0.25	-0.6
3,031,255	+		Sama_2522	0.25	-1.2
3,031,288	+		Sama_2522	0.27	-0.9
3,031,288	+		Sama_2522	0.27	+0.1
3,031,288	+		Sama_2522	0.27	-3.8
3,031,288	+		Sama_2522	0.27	-1.4
3,031,289	-		Sama_2522	0.27	-1.2
3,031,426	+		Sama_2522	0.35	+0.4
3,031,426	+		Sama_2522	0.35	-2.6
3,031,426	+		Sama_2522	0.35	-3.0
3,031,426	+		Sama_2522	0.35	+0.5
3,031,426	+		Sama_2522	0.35	-2.5
3,031,493	+		Sama_2522	0.39	-1.3
3,031,584	+		Sama_2522	0.44	-0.7
3,031,636	+		Sama_2522	0.47	-0.5
3,031,636	+		Sama_2522	0.47	-1.5
3,031,636	+		Sama_2522	0.47	-0.9
3,031,636	+		Sama_2522	0.47	-1.6
3,031,662	+		Sama_2522	0.49	-1.0
3,031,668	+		Sama_2522	0.49	-0.9
3,031,668	+		Sama_2522	0.49	-1.1
3,031,701	+		Sama_2522	0.51	-2.0
3,031,707	+		Sama_2522	0.51	-1.3
3,031,743	+		Sama_2522	0.53	-2.5
3,031,743	+		Sama_2522	0.53	-2.2
3,031,743	+		Sama_2522	0.53	+0.4