Strain Fitness in Shewanella amazonensis SB2B around Sama_2514

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,019,000	+				+0.4
3,019,000	+				+0.2
3,019,000	+				-1.2
3,019,049	-				+0.1
3,019,259	+		Sama_2513	0.21	-0.3
3,019,297	+		Sama_2513	0.28	+0.2
3,019,297	+		Sama_2513	0.28	+0.4
3,019,297	+		Sama_2513	0.28	+0.2
3,019,298	-		Sama_2513	0.28	+0.1
3,019,314	+		Sama_2513	0.30	+1.1
3,019,315	-		Sama_2513	0.30	+0.1
3,019,315	-		Sama_2513	0.30	-0.1
3,019,315	-		Sama_2513	0.30	-1.0
3,019,315	-		Sama_2513	0.30	-0.1
3,019,321	-		Sama_2513	0.31	-0.0
3,019,352	+		Sama_2513	0.36	-0.8
3,019,352	+		Sama_2513	0.36	-1.7
3,019,427	+		Sama_2513	0.48	-1.5
3,019,428	-		Sama_2513	0.49	-1.2
3,019,428	-		Sama_2513	0.49	-0.5
3,019,454	+		Sama_2513	0.53	+0.5
3,019,455	-		Sama_2513	0.53	+0.2
3,019,455	-		Sama_2513	0.53	-0.5
3,019,455	-		Sama_2513	0.53	+0.5
3,019,475	+		Sama_2513	0.56	-1.6
3,019,475	+		Sama_2513	0.56	+0.2
3,019,475	+		Sama_2513	0.56	+0.1
3,019,475	+		Sama_2513	0.56	+1.3
3,019,475	+		Sama_2513	0.56	+0.5
3,019,475	+		Sama_2513	0.56	-0.6
3,019,476	-		Sama_2513	0.56	-0.8
3,019,476	-		Sama_2513	0.56	+0.3
3,019,476	-		Sama_2513	0.56	-0.3
3,019,476	-		Sama_2513	0.56	+0.2
3,019,476	-		Sama_2513	0.56	+0.5
3,019,525	+		Sama_2513	0.64	-0.1
3,019,606	-		Sama_2513	0.77	+0.1
3,019,606	-		Sama_2513	0.77	-0.9
3,019,606	-		Sama_2513	0.77	-0.5
3,019,606	-		Sama_2513	0.77	-0.5
3,019,636	+		Sama_2513	0.82	-0.5
3,019,636	+		Sama_2513	0.82	-0.9
3,019,636	+		Sama_2513	0.82	-0.5
3,019,637	-		Sama_2513	0.82	+0.1
3,019,637	-		Sama_2513	0.82	-0.1
3,019,710	+				-1.5
3,019,710	+				-0.1
3,019,710	+				-1.1
3,019,711	-				-1.1
3,019,767	-				-0.2
3,019,825	+				+0.1
3,019,873	-				+0.5
3,019,959	-				-0.8
3,020,018	+				-0.1
3,020,079	+		Sama_2514	0.21	-1.1
3,020,079	+		Sama_2514	0.21	+0.6
3,020,079	+		Sama_2514	0.21	-0.0
3,020,079	+		Sama_2514	0.21	+0.8
3,020,101	+		Sama_2514	0.26	-1.4
3,020,102	-		Sama_2514	0.26	+0.1
3,020,102	-		Sama_2514	0.26	+0.5
3,020,102	-		Sama_2514	0.26	+1.3
3,020,104	+		Sama_2514	0.27	+0.1
3,020,105	-		Sama_2514	0.27	+0.7
3,020,140	+		Sama_2514	0.35	+0.8
3,020,140	+		Sama_2514	0.35	+1.1
3,020,141	-		Sama_2514	0.36	-0.3
3,020,141	-		Sama_2514	0.36	+0.3
3,020,167	+		Sama_2514	0.42	-0.2
3,020,167	+		Sama_2514	0.42	+0.4
3,020,172	-		Sama_2514	0.43	+2.1
3,020,183	+		Sama_2514	0.46	-0.1
3,020,183	+		Sama_2514	0.46	+0.2
3,020,183	+		Sama_2514	0.46	-0.1
3,020,183	+		Sama_2514	0.46	-1.0
3,020,184	-		Sama_2514	0.46	-0.4
3,020,194	+		Sama_2514	0.48	+0.8
3,020,220	+		Sama_2514	0.54	+0.4
3,020,279	+		Sama_2514	0.68	+0.1
3,020,279	+		Sama_2514	0.68	-1.5
3,020,279	+		Sama_2514	0.68	-0.5
3,020,280	-		Sama_2514	0.69	+0.5
3,020,283	+		Sama_2514	0.69	-0.2
3,020,283	+		Sama_2514	0.69	+0.1
3,020,283	+		Sama_2514	0.69	+1.4
3,020,283	+		Sama_2514	0.69	+0.4
3,020,283	+		Sama_2514	0.69	-0.3
3,020,284	-		Sama_2514	0.70	-0.0
3,020,284	-		Sama_2514	0.70	-1.7
3,020,284	-		Sama_2514	0.70	+0.4
3,020,284	-		Sama_2514	0.70	+1.0
3,020,356	+		Sama_2514	0.87	+0.3
3,020,356	+		Sama_2514	0.87	-1.1
3,020,356	+		Sama_2514	0.87	-0.8
3,020,356	+		Sama_2514	0.87	-0.1
3,020,356	+		Sama_2514	0.87	+0.5
3,020,357	-		Sama_2514	0.87	+1.1
3,020,357	-		Sama_2514	0.87	+1.0
3,020,357	-		Sama_2514	0.87	+0.2
3,020,357	-		Sama_2514	0.87	+0.2
3,020,396	+				+0.1
3,020,410	+				-1.2
3,020,410	+				-1.5
3,020,410	+				+1.8
3,020,411	-				-0.5
3,020,411	-				+0.4
3,020,411	-				+0.1
3,020,411	-				-1.6
3,020,437	+				-0.5
3,020,437	+				+0.2
3,020,437	+				-1.6
3,020,437	+				-0.0
3,020,437	+				+0.2
3,020,437	+				-0.6
3,020,438	-				+0.1
3,020,438	-				+0.5
3,020,438	-				+0.8
3,020,441	+				+0.2
3,020,457	+				+0.4
3,020,458	-				+0.5
3,020,482	-				+0.6
3,020,488	+				-0.5
3,020,488	+				+0.2
3,020,488	+				-0.1
3,020,493	-				+0.4
3,020,493	-				-1.1
3,020,493	-				-0.5
3,020,500	-				+1.1
3,020,511	+				-0.4
3,020,511	+				-0.3
3,020,511	+				-0.4
3,020,512	-				-1.2
3,020,512	-				-0.1
3,020,512	-				+0.1
3,020,533	+				-0.3
3,020,533	+				-1.1
3,020,533	+				+0.7
3,020,534	-				-1.1
3,020,534	-				+0.1
3,020,534	-				+0.4
3,020,534	-				+0.6
3,020,534	-				+0.5
3,020,534	-				+0.4
3,020,535	+				-0.5
3,020,535	+				+0.9
3,020,535	+				+0.1
3,020,535	+				-0.8
3,020,535	+				+1.3
3,020,536	-				-0.0
3,020,536	-				+0.1
3,020,536	-				+0.2
3,020,536	-				+0.3
3,020,536	-				+0.7
3,020,536	-				-0.2
3,020,536	-				-0.6
3,020,536	-				-0.3
3,020,536	-				+0.2
3,020,536	-				-0.7
3,020,536	-				+1.1
3,020,655	+	proA	Sama_2515	0.12	+0.4
3,020,671	+	proA	Sama_2515	0.14	-1.1
3,020,671	+	proA	Sama_2515	0.14	+0.6
3,020,683	+	proA	Sama_2515	0.15	-0.1
3,020,683	+	proA	Sama_2515	0.15	-0.9
3,020,742	+	proA	Sama_2515	0.19	-0.1
3,020,742	+	proA	Sama_2515	0.19	-0.3
3,020,742	+	proA	Sama_2515	0.19	-0.2
3,020,743	-	proA	Sama_2515	0.19	-0.1
3,020,935	+	proA	Sama_2515	0.35	+0.6
3,020,936	-	proA	Sama_2515	0.35	-0.2
3,020,936	-	proA	Sama_2515	0.35	+0.9
3,020,965	+	proA	Sama_2515	0.37	+0.1
3,020,965	+	proA	Sama_2515	0.37	-0.7
3,020,965	+	proA	Sama_2515	0.37	+0.3
3,020,965	+	proA	Sama_2515	0.37	+0.3
3,020,966	-	proA	Sama_2515	0.37	-1.6
3,020,966	-	proA	Sama_2515	0.37	+0.2
3,020,969	+	proA	Sama_2515	0.37	+0.1
3,020,969	+	proA	Sama_2515	0.37	-0.5
3,020,969	+	proA	Sama_2515	0.37	+0.0
3,020,969	+	proA	Sama_2515	0.37	-0.2
3,020,969	+	proA	Sama_2515	0.37	+1.5
3,020,969	+	proA	Sama_2515	0.37	-0.2
3,020,969	+	proA	Sama_2515	0.37	-0.2
3,020,970	-	proA	Sama_2515	0.37	+0.1
3,020,970	-	proA	Sama_2515	0.37	+0.7
3,020,990	+	proA	Sama_2515	0.39	-0.5
3,020,990	+	proA	Sama_2515	0.39	+0.3
3,020,990	+	proA	Sama_2515	0.39	+0.8
3,020,990	+	proA	Sama_2515	0.39	-1.7
3,020,990	+	proA	Sama_2515	0.39	+0.2
3,020,990	+	proA	Sama_2515	0.39	+0.4
3,020,990	+	proA	Sama_2515	0.39	-0.9
3,020,990	+	proA	Sama_2515	0.39	+0.3
3,020,990	+	proA	Sama_2515	0.39	+0.8
3,020,991	-	proA	Sama_2515	0.39	+1.1
3,020,991	-	proA	Sama_2515	0.39	+1.0
3,020,991	-	proA	Sama_2515	0.39	-1.2
3,020,991	-	proA	Sama_2515	0.39	-0.1
3,020,991	-	proA	Sama_2515	0.39	-0.7
3,020,991	-	proA	Sama_2515	0.39	+0.6
3,020,995	+	proA	Sama_2515	0.39	+0.8
3,020,995	+	proA	Sama_2515	0.39	+0.7
3,020,996	-	proA	Sama_2515	0.39	-1.3
3,020,996	-	proA	Sama_2515	0.39	-0.0
3,021,019	+	proA	Sama_2515	0.41	+1.1
3,021,019	+	proA	Sama_2515	0.41	+0.1
3,021,020	-	proA	Sama_2515	0.41	+0.9
3,021,055	+	proA	Sama_2515	0.44	-0.2
3,021,056	-	proA	Sama_2515	0.44	+0.5
3,021,063	+	proA	Sama_2515	0.45	+0.4
3,021,063	+	proA	Sama_2515	0.45	+0.7
3,021,064	-	proA	Sama_2515	0.45	-0.0
3,021,155	+	proA	Sama_2515	0.52	+0.1
3,021,155	+	proA	Sama_2515	0.52	-1.1
3,021,155	+	proA	Sama_2515	0.52	-0.2
3,021,156	-	proA	Sama_2515	0.52	-0.9
3,021,156	-	proA	Sama_2515	0.52	+0.5
3,021,173	-	proA	Sama_2515	0.53	+0.6
3,021,173	-	proA	Sama_2515	0.53	-1.2
3,021,214	+	proA	Sama_2515	0.57	-0.4
3,021,214	+	proA	Sama_2515	0.57	+1.2
3,021,214	+	proA	Sama_2515	0.57	+1.5
3,021,214	+	proA	Sama_2515	0.57	-0.3
3,021,215	-	proA	Sama_2515	0.57	-0.0
3,021,218	+	proA	Sama_2515	0.57	-0.8
3,021,219	-	proA	Sama_2515	0.57	-0.1
3,021,219	-	proA	Sama_2515	0.57	-0.9
3,021,219	-	proA	Sama_2515	0.57	-0.5
3,021,310	+	proA	Sama_2515	0.64	-0.9
3,021,311	-	proA	Sama_2515	0.64	-0.1
3,021,311	-	proA	Sama_2515	0.64	-0.3
3,021,391	-	proA	Sama_2515	0.71	+0.8
3,021,395	-	proA	Sama_2515	0.71	-0.4
3,021,395	-	proA	Sama_2515	0.71	-0.3