Strain Fitness in Shewanella amazonensis SB2B around Sama_2296

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,760,088	-				-0.0
2,760,112	+				-0.0
2,760,113	-				-0.9
2,760,113	-				+0.4
2,760,113	-				-0.8
2,760,197	+	fliH	Sama_2295	0.12	+0.1
2,760,197	+	fliH	Sama_2295	0.12	-1.0
2,760,197	+	fliH	Sama_2295	0.12	-0.0
2,760,198	-	fliH	Sama_2295	0.12	-0.7
2,760,249	-	fliH	Sama_2295	0.18	-0.7
2,760,249	-	fliH	Sama_2295	0.18	+0.3
2,760,278	-	fliH	Sama_2295	0.21	-0.4
2,760,356	-	fliH	Sama_2295	0.30	-0.4
2,760,378	+	fliH	Sama_2295	0.32	+1.3
2,760,378	+	fliH	Sama_2295	0.32	+0.5
2,760,379	-	fliH	Sama_2295	0.32	+0.9
2,760,379	-	fliH	Sama_2295	0.32	-0.9
2,760,480	-	fliH	Sama_2295	0.44	+0.3
2,760,480	-	fliH	Sama_2295	0.44	+0.5
2,760,713	+	fliH	Sama_2295	0.69	-0.5
2,760,714	-	fliH	Sama_2295	0.70	+0.2
2,760,801	-	fliH	Sama_2295	0.79	-0.4
2,760,801	-	fliH	Sama_2295	0.79	-0.6
2,760,959	+				-1.4
2,761,155	+	fliG	Sama_2296	0.16	+1.4
2,761,283	-	fliG	Sama_2296	0.28	-1.0
2,761,373	+	fliG	Sama_2296	0.37	+1.0
2,761,374	-	fliG	Sama_2296	0.37	-0.7
2,761,374	-	fliG	Sama_2296	0.37	-0.7
2,761,490	-	fliG	Sama_2296	0.48	-2.0
2,761,490	-	fliG	Sama_2296	0.48	-1.1
2,761,490	-	fliG	Sama_2296	0.48	-2.4
2,761,584	-	fliG	Sama_2296	0.57	-0.3
2,761,915	-	fliG	Sama_2296	0.89	+0.4
2,762,102	-				+0.3
2,762,108	-				-0.9
2,762,108	-				-1.8
2,762,158	-				-1.8
2,762,158	-				+0.3
2,762,158	-				-0.4
2,762,164	-				-0.8
2,762,164	-				-0.6
2,762,387	-	fliF	Sama_2297	0.22	+0.1
2,762,387	-	fliF	Sama_2297	0.22	-1.6
2,762,387	-	fliF	Sama_2297	0.22	-1.8
2,762,387	-	fliF	Sama_2297	0.22	+0.2
2,762,387	-	fliF	Sama_2297	0.22	-1.8
2,762,387	-	fliF	Sama_2297	0.22	-1.2
2,762,387	-	fliF	Sama_2297	0.22	+0.6
2,762,445	-	fliF	Sama_2297	0.25	-0.8
2,762,445	-	fliF	Sama_2297	0.25	+0.2
2,762,445	-	fliF	Sama_2297	0.25	-0.4
2,762,445	-	fliF	Sama_2297	0.25	-0.8
2,762,445	-	fliF	Sama_2297	0.25	-1.4
2,762,445	-	fliF	Sama_2297	0.25	+0.2
2,762,570	-	fliF	Sama_2297	0.33	+0.8
2,762,570	-	fliF	Sama_2297	0.33	-1.4
2,762,589	-	fliF	Sama_2297	0.34	-1.0
2,762,589	-	fliF	Sama_2297	0.34	-1.6
2,762,589	-	fliF	Sama_2297	0.34	+0.1
2,762,589	-	fliF	Sama_2297	0.34	-0.2
2,762,589	-	fliF	Sama_2297	0.34	-0.4
2,762,653	-	fliF	Sama_2297	0.37	-1.4
2,762,653	-	fliF	Sama_2297	0.37	-0.0
2,762,657	-	fliF	Sama_2297	0.38	-1.0