Strain Fitness in Shewanella amazonensis SB2B around Sama_2279

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,744,416	-				-0.9
2,744,479	-				-0.6
2,744,633	-				-0.2
2,744,744	-		Sama_2278	0.13	-0.3
2,744,744	-		Sama_2278	0.13	-0.0
2,744,744	-		Sama_2278	0.13	-0.2
2,744,744	-		Sama_2278	0.13	-0.7
2,744,744	-		Sama_2278	0.13	-0.2
2,744,744	-		Sama_2278	0.13	+2.0
2,744,755	-		Sama_2278	0.15	+0.2
2,744,818	-		Sama_2278	0.23	+0.7
2,744,960	-		Sama_2278	0.42	-0.7
2,744,960	-		Sama_2278	0.42	+0.3
2,744,960	-		Sama_2278	0.42	+1.0
2,744,989	-		Sama_2278	0.46	-1.1
2,745,043	-		Sama_2278	0.54	-0.1
2,745,052	-		Sama_2278	0.55	-0.0
2,745,121	-		Sama_2278	0.64	+0.8
2,745,121	-		Sama_2278	0.64	-1.4
2,745,121	-		Sama_2278	0.64	+1.3
2,745,121	-		Sama_2278	0.64	+0.8
2,745,124	+		Sama_2278	0.65	-0.0
2,745,124	+		Sama_2278	0.65	+0.0
2,745,125	-		Sama_2278	0.65	-0.4
2,745,125	-		Sama_2278	0.65	-0.2
2,745,125	-		Sama_2278	0.65	+0.7
2,745,125	-		Sama_2278	0.65	+0.3
2,745,125	-		Sama_2278	0.65	-0.1
2,745,125	-		Sama_2278	0.65	+0.3
2,745,125	-		Sama_2278	0.65	-0.2
2,745,125	-		Sama_2278	0.65	-1.6
2,745,132	-		Sama_2278	0.66	-0.6
2,745,160	-		Sama_2278	0.70	-0.2
2,745,221	-		Sama_2278	0.78	-0.0
2,745,221	-		Sama_2278	0.78	-0.6
2,745,293	-		Sama_2278	0.88	+0.4
2,745,293	-		Sama_2278	0.88	-0.5
2,745,358	-				-0.6
2,745,358	-				+0.7
2,745,385	-				+0.9
2,745,385	-				-0.8
2,745,461	-		Sama_2279	0.16	-1.3
2,745,469	-		Sama_2279	0.18	-0.6
2,745,469	-		Sama_2279	0.18	-0.3
2,745,469	-		Sama_2279	0.18	-0.7
2,745,545	-		Sama_2279	0.38	-0.7
2,745,692	-		Sama_2279	0.77	-0.6
2,745,692	-		Sama_2279	0.77	-0.2
2,745,695	-		Sama_2279	0.77	-0.9
2,745,728	-		Sama_2279	0.86	-0.7
2,745,728	-		Sama_2279	0.86	-0.0
2,745,770	-				-0.5
2,745,770	-				-0.3
2,745,770	-				-0.4
2,745,770	-				-0.5
2,745,770	-				-0.0
2,745,808	-				-0.3
2,745,828	-				-1.0
2,745,828	-				-1.4
2,745,828	-				-0.9
2,745,830	-				-1.1
2,745,830	-				+0.2
2,745,853	-				+0.6
2,745,853	-				-1.8
2,746,047	-	fliA	Sama_2280	0.31	-0.2
2,746,047	-	fliA	Sama_2280	0.31	-0.7
2,746,047	-	fliA	Sama_2280	0.31	-0.2
2,746,094	-	fliA	Sama_2280	0.37	+0.9
2,746,100	-	fliA	Sama_2280	0.38	+0.7
2,746,109	-	fliA	Sama_2280	0.39	-0.2
2,746,109	-	fliA	Sama_2280	0.39	+0.2
2,746,123	-	fliA	Sama_2280	0.41	-0.0
2,746,147	-	fliA	Sama_2280	0.45	-0.3
2,746,155	-	fliA	Sama_2280	0.46	-0.4
2,746,155	-	fliA	Sama_2280	0.46	-0.4
2,746,155	-	fliA	Sama_2280	0.46	-0.4
2,746,235	-	fliA	Sama_2280	0.57	-0.3
2,746,261	-	fliA	Sama_2280	0.60	-0.3
2,746,323	+	fliA	Sama_2280	0.69	-0.0
2,746,430	-	fliA	Sama_2280	0.84	+0.0
2,746,430	-	fliA	Sama_2280	0.84	-0.7
2,746,455	+	fliA	Sama_2280	0.87	+0.2
2,746,455	+	fliA	Sama_2280	0.87	+0.4
2,746,456	-	fliA	Sama_2280	0.88	-0.4
2,746,456	-	fliA	Sama_2280	0.88	-0.0
2,746,456	-	fliA	Sama_2280	0.88	+0.2
2,746,456	-	fliA	Sama_2280	0.88	+0.0
2,746,456	-	fliA	Sama_2280	0.88	+0.8
2,746,487	+				+1.0
2,746,509	+				-0.6
2,746,510	-				-0.5
2,746,525	-				+0.2
2,746,525	-				+1.6
2,746,526	+				+0.7
2,746,527	-				+0.4
2,746,527	-				-0.1
2,746,540	-				+0.6
2,746,540	-				+0.6
2,746,578	-				+0.1
2,746,578	-				+0.9
2,746,628	-		Sama_2281	0.10	+0.4
2,746,646	-		Sama_2281	0.12	+1.0
2,746,646	-		Sama_2281	0.12	+0.0
2,746,663	-		Sama_2281	0.14	+0.2
2,746,698	-		Sama_2281	0.18	+0.1
2,746,698	-		Sama_2281	0.18	-0.2
2,746,715	-		Sama_2281	0.20	-1.8
2,746,719	-		Sama_2281	0.21	+1.0