Strain Fitness in Shewanella amazonensis SB2B around Sama_2259

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,721,345	-		Sama_2257	0.70	-1.8
2,721,460	-		Sama_2257	0.80	+0.4
2,721,513	-		Sama_2257	0.85	-1.8
2,721,513	-		Sama_2257	0.85	-2.5
2,721,516	-		Sama_2257	0.85	-2.5
2,721,516	-		Sama_2257	0.85	-1.7
2,721,531	+		Sama_2257	0.87	-0.4
2,721,532	-		Sama_2257	0.87	-1.8
2,721,644	-				-1.6
2,721,674	-				-2.2
2,721,674	-				-2.5
2,721,674	-				+1.2
2,721,683	-				-1.6
2,721,687	-				-0.6
2,721,687	-				-1.8
2,721,734	+				-1.0
2,722,314	-				+0.4
2,722,314	-				-0.4
2,722,393	-		Sama_2259	0.13	-1.2
2,722,413	-		Sama_2259	0.15	-2.7
2,722,481	+		Sama_2259	0.22	-2.4
2,722,482	-		Sama_2259	0.23	-0.8
2,722,482	-		Sama_2259	0.23	-2.4
2,722,575	+		Sama_2259	0.32	-0.4
2,722,576	-		Sama_2259	0.32	-1.8
2,722,576	-		Sama_2259	0.32	-2.0
2,722,607	-		Sama_2259	0.36	-2.2
2,722,620	-		Sama_2259	0.37	-0.0
2,722,653	-		Sama_2259	0.40	-1.5
2,722,658	-		Sama_2259	0.41	-0.6
2,722,658	-		Sama_2259	0.41	-2.2
2,722,674	-		Sama_2259	0.43	-0.9
2,722,674	-		Sama_2259	0.43	-2.6
2,722,726	+		Sama_2259	0.48	-0.6
2,722,751	-		Sama_2259	0.51	-1.0
2,722,877	-		Sama_2259	0.64	-1.8
2,722,915	-		Sama_2259	0.68	-2.5
2,723,004	-		Sama_2259	0.77	-1.1
2,723,154	-				-0.7
2,723,285	-				-1.6
2,723,298	-				-0.0
2,723,388	-		Sama_2260	0.12	-0.4
2,723,520	+		Sama_2260	0.22	-0.8
2,723,541	-		Sama_2260	0.24	-2.2
2,723,568	-		Sama_2260	0.26	-2.4
2,723,622	+		Sama_2260	0.30	-0.4
2,723,623	-		Sama_2260	0.30	-1.4
2,723,627	-		Sama_2260	0.31	-0.3
2,723,652	-		Sama_2260	0.33	-0.4
2,723,714	-		Sama_2260	0.37	-2.0
2,723,728	-		Sama_2260	0.39	-0.6
2,723,925	-		Sama_2260	0.54	-0.0
2,724,111	+		Sama_2260	0.69	-0.4
2,724,125	-		Sama_2260	0.70	-0.7
2,724,196	-		Sama_2260	0.75	-1.2
2,724,196	-		Sama_2260	0.75	+0.2