Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2256 and Sama_2257 are separated by 1 nucleotides Sama_2257 and Sama_2258 are separated by 9 nucleotides Sama_2258 and Sama_2259 are separated by 3 nucleotides
Sama_2256: Sama_2256 - hypothetical protein (RefSeq), at 2,719,556 to 2,720,596
_2256
Sama_2257: Sama_2257 - DegT/DnrJ/EryC1/StrS family protein (RefSeq), at 2,720,598 to 2,721,671
_2257
Sama_2258: Sama_2258 - putative acetyltransferase (RefSeq), at 2,721,681 to 2,722,262
_2258
Sama_2259: Sama_2259 - MviM protein (RefSeq), at 2,722,266 to 2,723,222
_2259
Position (kb)
2720
2721
2722 Strain fitness (log2 ratio)
-2
-1
0
1 at 2720.863 kb on - strand, within Sama_2257 at 2720.901 kb on - strand, within Sama_2257 at 2720.937 kb on + strand, within Sama_2257 at 2720.985 kb on + strand, within Sama_2257 at 2720.986 kb on - strand, within Sama_2257 at 2720.986 kb on - strand, within Sama_2257 at 2720.986 kb on - strand, within Sama_2257 at 2721.345 kb on - strand, within Sama_2257 at 2721.460 kb on - strand, within Sama_2257 at 2721.513 kb on - strand, within Sama_2257 at 2721.513 kb on - strand, within Sama_2257 at 2721.516 kb on - strand, within Sama_2257 at 2721.516 kb on - strand, within Sama_2257 at 2721.531 kb on + strand, within Sama_2257 at 2721.532 kb on - strand, within Sama_2257 at 2721.644 kb on - strand at 2721.674 kb on - strand at 2721.674 kb on - strand at 2721.674 kb on - strand at 2721.683 kb on - strand at 2721.687 kb on - strand at 2721.687 kb on - strand at 2721.734 kb on + strand at 2722.314 kb on - strand at 2722.314 kb on - strand at 2722.393 kb on - strand, within Sama_2259 at 2722.413 kb on - strand, within Sama_2259 at 2722.481 kb on + strand, within Sama_2259 at 2722.482 kb on - strand, within Sama_2259 at 2722.482 kb on - strand, within Sama_2259 at 2722.575 kb on + strand, within Sama_2259 at 2722.576 kb on - strand, within Sama_2259 at 2722.576 kb on - strand, within Sama_2259 at 2722.607 kb on - strand, within Sama_2259 at 2722.620 kb on - strand, within Sama_2259 at 2722.653 kb on - strand, within Sama_2259 at 2722.658 kb on - strand, within Sama_2259 at 2722.658 kb on - strand, within Sama_2259
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 2,720,863 - Sama_2257 0.25 -0.4 2,720,901 - Sama_2257 0.28 -0.3 2,720,937 + Sama_2257 0.32 -1.5 2,720,985 + Sama_2257 0.36 -0.0 2,720,986 - Sama_2257 0.36 -2.4 2,720,986 - Sama_2257 0.36 -1.0 2,720,986 - Sama_2257 0.36 -1.6 2,721,345 - Sama_2257 0.70 -1.8 2,721,460 - Sama_2257 0.80 +0.4 2,721,513 - Sama_2257 0.85 -1.8 2,721,513 - Sama_2257 0.85 -2.5 2,721,516 - Sama_2257 0.85 -2.5 2,721,516 - Sama_2257 0.85 -1.7 2,721,531 + Sama_2257 0.87 -0.4 2,721,532 - Sama_2257 0.87 -1.8 2,721,644 - -1.6 2,721,674 - -2.2 2,721,674 - -2.5 2,721,674 - +1.2 2,721,683 - -1.6 2,721,687 - -0.6 2,721,687 - -1.8 2,721,734 + -1.0 2,722,314 - +0.4 2,722,314 - -0.4 2,722,393 - Sama_2259 0.13 -1.2 2,722,413 - Sama_2259 0.15 -2.7 2,722,481 + Sama_2259 0.22 -2.4 2,722,482 - Sama_2259 0.23 -0.8 2,722,482 - Sama_2259 0.23 -2.4 2,722,575 + Sama_2259 0.32 -0.4 2,722,576 - Sama_2259 0.32 -1.8 2,722,576 - Sama_2259 0.32 -2.0 2,722,607 - Sama_2259 0.36 -2.2 2,722,620 - Sama_2259 0.37 -0.0 2,722,653 - Sama_2259 0.40 -1.5 2,722,658 - Sama_2259 0.41 -0.6 2,722,658 - Sama_2259 0.41 -2.2
Or see this region's nucleotide sequence