Strain Fitness in Shewanella amazonensis SB2B around Sama_1837

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,235,881	+				+0.8
2,236,073	+		Sama_1836	0.27	+0.8
2,236,112	+		Sama_1836	0.33	-2.1
2,236,113	-		Sama_1836	0.34	+0.3
2,236,119	+		Sama_1836	0.35	-0.7
2,236,119	+		Sama_1836	0.35	+0.8
2,236,119	+		Sama_1836	0.35	-0.3
2,236,119	+		Sama_1836	0.35	-0.2
2,236,120	-		Sama_1836	0.35	+2.1
2,236,271	-		Sama_1836	0.58	-0.5
2,236,274	+		Sama_1836	0.59	+1.3
2,236,274	+		Sama_1836	0.59	-0.1
2,236,275	-		Sama_1836	0.59	+0.8
2,236,275	-		Sama_1836	0.59	-1.6
2,236,275	-		Sama_1836	0.59	+1.3
2,236,517	+				+0.3
2,236,536	+				-0.7
2,236,655	-				-0.1
2,236,655	-				+0.5
2,236,655	-				-1.1
2,236,712	-				-0.1
2,236,712	-				-0.1
2,236,712	-				-2.1
2,236,820	+				+0.5
2,236,835	+				-0.5
2,236,875	+				-1.2
2,236,875	+				-0.4
2,236,918	+		Sama_1837	0.15	+0.9
2,236,919	-		Sama_1837	0.15	+0.6
2,236,970	-		Sama_1837	0.27	+0.8
2,236,975	+		Sama_1837	0.28	+1.0
2,237,059	+		Sama_1837	0.49	+0.8
2,237,107	-		Sama_1837	0.61	+0.4
2,237,107	-		Sama_1837	0.61	+0.2
2,237,110	+		Sama_1837	0.61	-0.1
2,237,111	-		Sama_1837	0.62	+1.5
2,237,111	-		Sama_1837	0.62	-0.3
2,237,111	-		Sama_1837	0.62	+0.1
2,237,151	+		Sama_1837	0.71	-0.8
2,237,314	+				+0.3
2,237,364	+				-0.4
2,237,365	-				-1.1
2,237,365	-				-2.8
2,237,396	-				+2.6
2,237,461	+				+0.3
2,237,462	-				+0.3
2,237,503	-				-0.2
2,237,527	+				-0.1
2,237,527	+				-0.7
2,237,549	-				-1.6
2,237,563	-				-0.7
2,237,614	+				-0.2
2,237,615	-				+1.0
2,237,615	-				-0.5
2,237,615	-				+1.5
2,237,615	-				-0.9
2,237,617	+				-0.3
2,237,617	+				+0.7
2,237,618	-				+0.2
2,237,710	+		Sama_1838	0.13	+0.8
2,237,711	-		Sama_1838	0.14	+0.4
2,237,711	-		Sama_1838	0.14	-0.4
2,237,716	-		Sama_1838	0.14	-0.7
2,237,743	+		Sama_1838	0.15	+0.2
2,237,744	-		Sama_1838	0.15	+0.0
2,237,795	-		Sama_1838	0.17	-1.2
2,238,028	+		Sama_1838	0.26	-0.2
2,238,047	-		Sama_1838	0.27	+1.4
2,238,047	-		Sama_1838	0.27	+0.3
2,238,088	+		Sama_1838	0.28	-0.8
2,238,088	+		Sama_1838	0.28	+0.8
2,238,088	+		Sama_1838	0.28	-1.2
2,238,089	-		Sama_1838	0.29	+0.2
2,238,089	-		Sama_1838	0.29	-1.8
2,238,089	-		Sama_1838	0.29	+0.2
2,238,089	-		Sama_1838	0.29	+1.6
2,238,089	-		Sama_1838	0.29	-0.2
2,238,089	-		Sama_1838	0.29	+1.5
2,238,089	-		Sama_1838	0.29	-1.2
2,238,089	-		Sama_1838	0.29	+2.0
2,238,158	+		Sama_1838	0.31	-0.7
2,238,182	+		Sama_1838	0.32	+1.0
2,238,242	-		Sama_1838	0.35	+0.3