Strain Fitness in Shewanella amazonensis SB2B around Sama_1748

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,137,871	-				+0.2
2,137,909	+				+0.5
2,137,918	+				-1.1
2,137,918	+				-1.0
2,137,947	-				+2.1
2,137,947	-				-1.9
2,137,950	-				-0.1
2,137,950	-				+0.7
2,137,986	+				+0.5
2,137,986	+				+0.2
2,137,986	+				+1.5
2,137,986	+				-0.1
2,137,986	+				-0.9
2,137,987	-				+1.0
2,138,048	+				-0.3
2,138,177	+		Sama_1748	0.21	+0.1
2,138,177	+		Sama_1748	0.21	+1.0
2,138,196	+		Sama_1748	0.23	+1.1
2,138,196	+		Sama_1748	0.23	+0.6
2,138,196	+		Sama_1748	0.23	+0.7
2,138,210	-		Sama_1748	0.25	+1.2
2,138,210	-		Sama_1748	0.25	+0.3
2,138,238	+		Sama_1748	0.29	-0.6
2,138,238	+		Sama_1748	0.29	+0.5
2,138,239	-		Sama_1748	0.29	+1.1
2,138,372	-		Sama_1748	0.46	+0.4
2,138,372	-		Sama_1748	0.46	-1.0
2,138,391	-		Sama_1748	0.49	+0.7
2,138,394	-		Sama_1748	0.49	-0.3
2,138,394	-		Sama_1748	0.49	-0.0
2,138,407	-		Sama_1748	0.51	-1.5
2,138,442	+		Sama_1748	0.56	+0.3
2,138,442	+		Sama_1748	0.56	-0.9
2,138,442	+		Sama_1748	0.56	-0.0
2,138,442	+		Sama_1748	0.56	+0.5
2,138,586	+		Sama_1748	0.75	-0.3
2,138,586	+		Sama_1748	0.75	+0.6
2,138,874	+				+0.2
2,138,917	+				+1.0
2,138,917	+				+0.1
2,138,917	+				-1.3
2,138,917	+				-0.4
2,138,917	+				+0.0
2,138,918	-				-1.7
2,138,930	-				-1.1
2,138,930	-				-0.9
2,139,090	+				-1.1
2,139,090	+				+2.1
2,139,128	+				+0.5
2,139,128	+				-1.6
2,139,129	-				-0.7
2,139,129	-				-0.0
2,139,191	-				-1.1
2,139,486	+		Sama_1749	0.22	+1.1
2,139,486	+		Sama_1749	0.22	+0.6
2,139,611	+		Sama_1749	0.28	-0.6
2,139,611	+		Sama_1749	0.28	-0.3
2,139,612	-		Sama_1749	0.28	-0.3
2,139,703	+		Sama_1749	0.33	+0.1
2,139,703	+		Sama_1749	0.33	+0.1
2,139,703	+		Sama_1749	0.33	-0.3
2,139,703	+		Sama_1749	0.33	+0.7