Strain Fitness in Shewanella amazonensis SB2B around Sama_1698

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,077,579	+		Sama_1697	0.71	-1.8
2,077,624	-		Sama_1697	0.75	+0.7
2,077,624	-		Sama_1697	0.75	+0.3
2,077,627	+		Sama_1697	0.75	+0.5
2,077,627	+		Sama_1697	0.75	+0.5
2,077,627	+		Sama_1697	0.75	+0.0
2,077,629	+		Sama_1697	0.75	+0.3
2,077,631	+		Sama_1697	0.76	-1.6
2,077,631	+		Sama_1697	0.76	+0.7
2,077,631	+		Sama_1697	0.76	-0.3
2,077,632	-		Sama_1697	0.76	+1.0
2,077,632	-		Sama_1697	0.76	+1.1
2,077,632	-		Sama_1697	0.76	+0.6
2,077,674	-		Sama_1697	0.79	-1.8
2,077,724	+		Sama_1697	0.83	-0.0
2,077,725	-		Sama_1697	0.83	+2.3
2,077,884	-				-0.2
2,077,884	-				-1.6
2,077,898	-				-0.8
2,077,912	-				+0.7
2,077,912	-				+0.7
2,077,917	+				+0.3
2,077,918	-				+0.3
2,077,931	+				-0.2
2,077,945	-				-1.0
2,077,945	-				+0.3
2,077,947	+				+0.7
2,077,947	+				-0.1
2,077,948	-				+1.0
2,077,948	-				-0.6
2,077,960	+				-0.2
2,077,987	-				+0.2
2,078,006	+				+1.3
2,078,071	-				-1.0
2,078,139	+				-0.3
2,078,236	+				+0.2
2,078,246	+				-0.0
2,078,246	+				+0.7
2,078,321	+				+0.5
2,078,322	-				-1.0
2,078,428	+				-1.3
2,078,460	-				-0.3
2,078,470	+				+1.3
2,078,471	-				-1.1
2,078,588	+				-1.5
2,078,588	+				-2.7
2,078,588	+				-0.9
2,078,709	+		Sama_1698	0.10	-1.2
2,078,811	+		Sama_1698	0.17	-0.9
2,078,811	+		Sama_1698	0.17	-1.8
2,078,811	+		Sama_1698	0.17	+0.4
2,078,849	+		Sama_1698	0.20	-0.8
2,078,876	+		Sama_1698	0.22	-0.6
2,078,876	+		Sama_1698	0.22	-0.3
2,078,920	+		Sama_1698	0.25	-0.5
2,078,934	+		Sama_1698	0.26	+1.1
2,078,978	+		Sama_1698	0.30	-0.6
2,078,998	+		Sama_1698	0.31	-1.6
2,078,998	+		Sama_1698	0.31	+0.3
2,078,998	+		Sama_1698	0.31	-1.4
2,078,998	+		Sama_1698	0.31	-0.7
2,079,121	+		Sama_1698	0.40	-0.4
2,079,122	-		Sama_1698	0.40	-0.8
2,079,123	+		Sama_1698	0.40	+0.7
2,079,123	+		Sama_1698	0.40	-2.1
2,079,123	+		Sama_1698	0.40	-1.0
2,079,123	+		Sama_1698	0.40	-2.8
2,079,123	+		Sama_1698	0.40	-0.1
2,079,139	+		Sama_1698	0.41	-0.4
2,079,139	+		Sama_1698	0.41	-0.7
2,079,141	+		Sama_1698	0.41	-0.8
2,079,141	+		Sama_1698	0.41	-3.2
2,079,141	+		Sama_1698	0.41	-1.8
2,079,141	+		Sama_1698	0.41	-1.3
2,079,141	+		Sama_1698	0.41	-1.3
2,079,141	+		Sama_1698	0.41	-0.6
2,079,141	+		Sama_1698	0.41	-0.6
2,079,142	-		Sama_1698	0.41	+0.7
2,079,142	-		Sama_1698	0.41	-0.3
2,079,142	-		Sama_1698	0.41	-0.9
2,079,148	+		Sama_1698	0.42	-1.6
2,079,148	+		Sama_1698	0.42	+0.7
2,079,165	+		Sama_1698	0.43	-0.7
2,079,197	+		Sama_1698	0.45	-1.3
2,079,401	-		Sama_1698	0.60	+0.0
2,079,458	-		Sama_1698	0.64	-1.5
2,079,460	+		Sama_1698	0.64	-0.7
2,079,460	+		Sama_1698	0.64	+0.5
2,079,460	+		Sama_1698	0.64	-0.4
2,079,461	-		Sama_1698	0.64	-0.3
2,079,543	+		Sama_1698	0.70	-1.5
2,079,601	+		Sama_1698	0.75	-1.1
2,079,605	+		Sama_1698	0.75	+0.7
2,079,605	+		Sama_1698	0.75	+0.2
2,079,605	+		Sama_1698	0.75	+0.7
2,079,605	+		Sama_1698	0.75	+0.3
2,079,605	+		Sama_1698	0.75	+0.4
2,079,605	+		Sama_1698	0.75	+0.0
2,079,605	+		Sama_1698	0.75	-1.8
2,079,606	-		Sama_1698	0.75	-0.3
2,079,617	+		Sama_1698	0.76	+0.2
2,079,617	+		Sama_1698	0.76	+0.7
2,079,617	+		Sama_1698	0.76	-0.3
2,079,625	+		Sama_1698	0.76	-1.6
2,079,625	+		Sama_1698	0.76	-2.3
2,079,625	+		Sama_1698	0.76	-1.7
2,079,627	+		Sama_1698	0.77	+0.2
2,079,627	+		Sama_1698	0.77	+1.1
2,079,627	+		Sama_1698	0.77	-0.8
2,079,627	+		Sama_1698	0.77	+0.2
2,079,864	+				-0.8
2,079,975	-				+0.3
2,080,015	-				+1.1
2,080,030	+				-0.4
2,080,073	-				-1.3
2,080,075	+				+1.0
2,080,075	+				+0.2
2,080,075	+				-0.1
2,080,075	+				-0.0
2,080,076	-				+0.5
2,080,101	+				-1.1
2,080,101	+				-0.2
2,080,198	+				-0.1
2,080,199	-				+0.3
2,080,215	+				+0.1
2,080,215	+				-0.6
2,080,216	-				+0.3
2,080,234	-				-0.2
2,080,249	+				+0.4
2,080,339	-				+1.1
2,080,339	-				-0.4