Strain Fitness in Shewanella amazonensis SB2B around Sama_1560

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,899,507	+		Sama_1559	0.18	+0.8
1,899,569	+		Sama_1559	0.25	-0.1
1,899,569	+		Sama_1559	0.25	+1.7
1,899,569	+		Sama_1559	0.25	-1.0
1,899,569	+		Sama_1559	0.25	-0.6
1,899,570	-		Sama_1559	0.25	+0.1
1,899,596	+		Sama_1559	0.28	+0.2
1,899,596	+		Sama_1559	0.28	+0.1
1,899,596	+		Sama_1559	0.28	+0.8
1,899,629	+		Sama_1559	0.32	-0.3
1,899,629	+		Sama_1559	0.32	-0.6
1,899,629	+		Sama_1559	0.32	-1.1
1,899,629	+		Sama_1559	0.32	-0.2
1,899,629	+		Sama_1559	0.32	-0.2
1,899,630	-		Sama_1559	0.32	+0.6
1,899,630	-		Sama_1559	0.32	-0.5
1,899,751	-		Sama_1559	0.45	+0.1
1,899,793	+		Sama_1559	0.50	+0.6
1,899,793	+		Sama_1559	0.50	+0.3
1,899,799	+		Sama_1559	0.51	-0.8
1,899,911	-		Sama_1559	0.64	+0.3
1,899,937	+		Sama_1559	0.66	+0.0
1,899,937	+		Sama_1559	0.66	-0.4
1,899,937	+		Sama_1559	0.66	-0.4
1,899,938	-		Sama_1559	0.67	-0.9
1,899,938	-		Sama_1559	0.67	+0.6
1,899,959	+		Sama_1559	0.69	+0.2
1,899,959	+		Sama_1559	0.69	-0.7
1,899,959	+		Sama_1559	0.69	-0.4
1,899,959	+		Sama_1559	0.69	-0.5
1,899,959	+		Sama_1559	0.69	-1.0
1,899,960	-		Sama_1559	0.69	-0.9
1,899,962	+		Sama_1559	0.69	-0.6
1,899,977	+		Sama_1559	0.71	-0.5
1,899,977	+		Sama_1559	0.71	+1.2
1,899,977	+		Sama_1559	0.71	-0.4
1,900,019	+		Sama_1559	0.76	-1.5
1,900,099	-		Sama_1559	0.85	-0.4
1,900,099	-		Sama_1559	0.85	-0.3
1,900,106	+		Sama_1559	0.86	+1.6
1,900,146	+				-0.9
1,900,220	+				-0.5
1,900,221	-				-0.4
1,900,227	+				-0.1
1,900,227	+				-0.2
1,900,227	+				+2.4
1,900,227	+				+0.4
1,900,228	-				-0.9
1,900,228	-				+0.3
1,900,240	+				+0.5
1,900,248	+				-1.1
1,900,248	+				-0.5
1,900,248	+				-0.0
1,900,372	+		Sama_1560	0.12	+0.8
1,900,491	+		Sama_1560	0.26	-2.9
1,900,491	+		Sama_1560	0.26	-0.5
1,900,491	+		Sama_1560	0.26	+0.8
1,900,491	+		Sama_1560	0.26	+0.2
1,900,492	-		Sama_1560	0.26	-0.9
1,900,560	+		Sama_1560	0.34	-0.8
1,900,560	+		Sama_1560	0.34	-0.3
1,900,663	+		Sama_1560	0.47	-0.6
1,900,664	-		Sama_1560	0.47	+1.0
1,900,687	+		Sama_1560	0.49	-1.5
1,900,688	-		Sama_1560	0.49	-1.0
1,900,698	+		Sama_1560	0.51	-2.2
1,900,708	+		Sama_1560	0.52	-1.0
1,900,708	+		Sama_1560	0.52	-1.2
1,900,708	+		Sama_1560	0.52	-1.3
1,900,853	+		Sama_1560	0.69	-1.0
1,900,853	+		Sama_1560	0.69	-0.0
1,900,873	+		Sama_1560	0.71	+0.0
1,900,886	+		Sama_1560	0.73	-0.2
1,901,028	-		Sama_1560	0.90	-1.2
1,901,114	+				-1.0
1,901,191	-				+0.8
1,901,191	-				+0.8
1,901,776	+				-0.2
1,901,792	+				-0.2
1,901,796	+				-1.0
1,901,804	+				+0.1
1,901,805	-				+0.3
1,901,805	-				-1.2
1,901,805	-				-0.9
1,901,805	-				-0.8
1,901,825	-				-0.4
1,901,825	-				+2.4
1,901,825	-				-0.4
1,901,825	-				-0.0
1,901,851	-				+0.3
1,901,851	-				-0.0
1,901,860	-				+0.0
1,901,895	+				-0.1
1,901,918	-				+0.3
1,901,981	+				-0.2
1,901,982	-				+0.2
1,901,982	-				-0.6
1,901,982	-				-0.5
1,901,982	-				+0.6
1,902,000	+				-0.6
1,902,001	-				-1.1
1,902,018	+				+0.2
1,902,018	+				+0.1
1,902,019	-				-0.4
1,902,019	-				-0.3
1,902,019	-				-0.7
1,902,042	+				+0.1
1,902,082	+				-0.5
1,902,094	+				-0.4
1,902,094	+				-0.4
1,902,101	-				-0.5
1,902,105	+				+0.3
1,902,105	+				+0.3
1,902,106	-				-0.6
1,902,106	-				-0.5