Strain Fitness in Shewanella amazonensis SB2B around Sama_1538

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,874,825	+				-0.2
1,874,825	+				-0.3
1,874,852	+				-0.2
1,875,008	+		Sama_1538	0.58	-1.9
1,875,009	-		Sama_1538	0.58	-0.8
1,875,107	+				+0.2
1,875,107	+				-1.5
1,875,107	+				+0.5
1,875,113	-				+0.1
1,875,248	+				+0.3
1,875,248	+				+0.8
1,875,250	+				-1.1
1,875,251	-				+1.0
1,875,310	-				-0.7
1,875,314	-				+0.6
1,875,358	-				+1.6
1,875,358	-				+0.4
1,875,360	+				-0.4
1,875,360	+				-0.3
1,875,361	-				-3.3
1,875,361	-				+1.0
1,875,361	-				-0.5
1,875,366	+				+1.6
1,875,424	+		Sama_1539	0.13	+0.2
1,875,425	-		Sama_1539	0.13	-0.5
1,875,452	+		Sama_1539	0.15	-1.0
1,875,453	-		Sama_1539	0.16	+0.9
1,875,533	+		Sama_1539	0.22	+0.6
1,875,534	-		Sama_1539	0.22	-1.0
1,875,534	-		Sama_1539	0.22	+0.1
1,875,540	-		Sama_1539	0.22	+0.6
1,875,540	-		Sama_1539	0.22	-0.3
1,875,629	+		Sama_1539	0.30	-0.9
1,875,630	-		Sama_1539	0.30	-0.3
1,875,707	+		Sama_1539	0.36	+0.2
1,875,756	-		Sama_1539	0.40	+0.6
1,875,862	-		Sama_1539	0.48	-1.9
1,875,862	-		Sama_1539	0.48	+0.2
1,876,009	+		Sama_1539	0.60	-1.2
1,876,010	-		Sama_1539	0.60	-1.0
1,876,012	+		Sama_1539	0.60	-0.4
1,876,050	+		Sama_1539	0.63	-0.6
1,876,050	+		Sama_1539	0.63	+0.0
1,876,074	+		Sama_1539	0.65	-0.4
1,876,075	-		Sama_1539	0.65	+1.8