Strain Fitness in Shewanella amazonensis SB2B around Sama_1500

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,816,733	-				-0.7
1,816,846	+				-0.9
1,816,846	+				+0.3
1,816,865	+				+0.4
1,816,866	-				-0.5
1,816,937	-				-0.8
1,816,937	-				-0.6
1,816,937	-				+0.3
1,816,937	-				+0.7
1,816,937	-				+1.1
1,816,975	-				+0.4
1,816,992	-				+0.5
1,817,074	-				+0.9
1,817,074	-				-0.1
1,817,088	+				+0.9
1,817,133	+				-1.5
1,817,133	+				-0.6
1,817,133	+				-0.5
1,817,133	+				-0.5
1,817,133	+				-0.1
1,817,138	+				-1.5
1,817,138	+				+0.9
1,817,138	+				+0.3
1,817,138	+				-0.4
1,817,138	+				+0.2
1,817,139	-				-0.1
1,817,154	+				+0.1
1,817,163	+				+1.1
1,817,164	-				-0.2
1,817,181	+				-0.7
1,817,181	+				-0.5
1,817,182	-				+0.0
1,817,189	+				+0.2
1,817,231	-				+0.4
1,817,284	-				+0.0
1,817,284	-				-0.8
1,817,305	+				-0.7
1,817,305	+				-0.7
1,817,305	+				-0.1
1,817,306	-				-0.9
1,817,410	+				+0.3
1,817,411	-				-0.1
1,817,494	+				+0.3
1,817,494	+				+0.2
1,817,495	-				-0.9
1,817,653	+				+0.3
1,817,653	+				-0.5
1,817,687	+				+1.1
1,817,688	-				+0.5
1,817,743	+				-0.1
1,817,744	-				-0.9
1,817,828	+				+1.1
1,817,829	-				-1.5
1,817,885	+		Sama_1500	0.10	-0.2
1,817,886	-		Sama_1500	0.10	+0.3
1,817,886	-		Sama_1500	0.10	-0.6
1,817,886	-		Sama_1500	0.10	+0.4
1,818,037	+		Sama_1500	0.19	-0.4
1,818,100	+		Sama_1500	0.23	+0.4
1,818,101	-		Sama_1500	0.23	-0.1
1,818,119	+		Sama_1500	0.24	+0.1
1,818,119	+		Sama_1500	0.24	-0.6
1,818,120	-		Sama_1500	0.24	-0.5
1,818,207	+		Sama_1500	0.30	-1.1
1,818,208	-		Sama_1500	0.30	+0.0
1,818,217	-		Sama_1500	0.30	-0.6
1,818,322	+		Sama_1500	0.37	+0.1
1,818,322	+		Sama_1500	0.37	+0.3
1,818,454	+		Sama_1500	0.45	+0.4
1,818,690	+		Sama_1500	0.59	+0.7
1,818,691	-		Sama_1500	0.59	+0.3
1,818,691	-		Sama_1500	0.59	-0.1
1,818,691	-		Sama_1500	0.59	-1.7
1,818,713	-		Sama_1500	0.60	+1.1
1,818,859	+		Sama_1500	0.69	-0.3
1,818,859	+		Sama_1500	0.69	+0.1
1,818,859	+		Sama_1500	0.69	-0.0
1,818,859	+		Sama_1500	0.69	-1.1
1,818,859	+		Sama_1500	0.69	+2.6
1,818,859	+		Sama_1500	0.69	-0.6
1,818,859	+		Sama_1500	0.69	-0.1
1,818,860	-		Sama_1500	0.69	+0.5
1,818,871	+		Sama_1500	0.70	+0.1
1,818,872	-		Sama_1500	0.70	-0.1
1,818,907	+		Sama_1500	0.72	-0.4
1,818,912	+		Sama_1500	0.73	-0.4
1,818,912	+		Sama_1500	0.73	+0.1
1,818,913	-		Sama_1500	0.73	-1.7
1,819,073	+		Sama_1500	0.82	+0.6
1,819,101	+		Sama_1500	0.84	+0.2
1,819,102	-		Sama_1500	0.84	-0.1
1,819,108	+		Sama_1500	0.84	-0.4
1,819,108	+		Sama_1500	0.84	+0.3
1,819,108	+		Sama_1500	0.84	+0.1
1,819,108	+		Sama_1500	0.84	-0.6
1,819,109	-		Sama_1500	0.84	-0.1
1,819,140	+		Sama_1500	0.86	+0.1
1,819,148	+		Sama_1500	0.87	-1.0
1,819,214	+				+0.4
1,819,223	+				+0.1
1,819,295	-				-0.7
1,819,295	-				+0.9
1,819,295	-				-0.5
1,819,303	+				+0.4
1,819,303	+				+1.2
1,819,361	+				+0.3
1,819,362	-				-0.5
1,819,362	-				+0.7
1,819,362	-				-1.0
1,819,470	-		Sama_1501	0.11	-0.1
1,819,575	+		Sama_1501	0.22	-1.0
1,819,575	+		Sama_1501	0.22	-0.3
1,819,611	-		Sama_1501	0.26	-0.0
1,819,611	-		Sama_1501	0.26	+0.1
1,819,620	+		Sama_1501	0.27	+0.2
1,819,631	+		Sama_1501	0.29	+0.6
1,819,637	+		Sama_1501	0.29	-0.1
1,819,706	+		Sama_1501	0.37	+0.5
1,819,707	-		Sama_1501	0.37	-1.1
1,819,714	+		Sama_1501	0.38	+0.1
1,819,715	-		Sama_1501	0.38	-2.5
1,819,749	+		Sama_1501	0.41	-0.1
1,819,750	-		Sama_1501	0.42	-1.4
1,819,866	+		Sama_1501	0.54	-0.1
1,819,866	+		Sama_1501	0.54	-0.5
1,819,867	-		Sama_1501	0.54	+0.6
1,819,923	-		Sama_1501	0.60	+1.1
1,820,004	-		Sama_1501	0.69	-0.9
1,820,016	-		Sama_1501	0.71	-0.7
1,820,066	+		Sama_1501	0.76	-0.3
1,820,179	+		Sama_1501	0.88	-1.2
1,820,179	+		Sama_1501	0.88	-2.0
1,820,179	+		Sama_1501	0.88	+1.7
1,820,180	-		Sama_1501	0.89	+0.1
1,820,277	+				-0.7
1,820,277	+				-0.8
1,820,277	+				+0.7
1,820,325	+				+1.7
1,820,325	+				-0.6
1,820,325	+				+0.2
1,820,326	-				-0.2
1,820,326	-				-0.7
1,820,328	-				+1.0
1,820,328	-				+0.2
1,820,348	-				-0.3
1,820,348	-				-0.1