Strain Fitness in Shewanella amazonensis SB2B around Sama_1496

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,810,367	+		Sama_1495	0.37	-0.5
1,810,367	+		Sama_1495	0.37	-0.1
1,810,368	-		Sama_1495	0.37	-1.4
1,810,438	-		Sama_1495	0.43	+1.6
1,810,448	-		Sama_1495	0.44	+1.0
1,810,474	+		Sama_1495	0.46	+0.0
1,810,534	+		Sama_1495	0.51	-0.7
1,810,558	+		Sama_1495	0.53	+0.5
1,810,613	+		Sama_1495	0.58	-0.3
1,810,634	+		Sama_1495	0.60	+1.2
1,810,635	-		Sama_1495	0.60	+1.1
1,810,635	-		Sama_1495	0.60	-1.9
1,810,635	-		Sama_1495	0.60	-0.6
1,810,638	+		Sama_1495	0.60	-0.2
1,810,638	+		Sama_1495	0.60	-1.1
1,810,638	+		Sama_1495	0.60	-0.3
1,810,639	-		Sama_1495	0.60	-0.1
1,810,639	-		Sama_1495	0.60	+0.5
1,810,639	-		Sama_1495	0.60	+0.4
1,810,639	-		Sama_1495	0.60	-0.5
1,810,640	+		Sama_1495	0.60	+1.6
1,810,640	+		Sama_1495	0.60	-0.6
1,810,641	-		Sama_1495	0.60	+1.3
1,810,657	-		Sama_1495	0.61	+1.2
1,810,750	-		Sama_1495	0.69	-1.1
1,810,864	-		Sama_1495	0.79	-2.1
1,810,909	+		Sama_1495	0.82	-0.9
1,810,909	+		Sama_1495	0.82	-0.1
1,810,909	+		Sama_1495	0.82	+0.5
1,810,909	+		Sama_1495	0.82	-0.1
1,810,909	+		Sama_1495	0.82	+0.1
1,810,910	-		Sama_1495	0.83	-0.5
1,810,910	-		Sama_1495	0.83	-0.9
1,810,913	+		Sama_1495	0.83	+0.3
1,810,914	-		Sama_1495	0.83	-0.8
1,810,914	-		Sama_1495	0.83	-0.0
1,811,109	+				+0.6
1,811,109	+				-0.4
1,811,109	+				+0.9
1,811,110	-				+1.5
1,811,121	+				-0.1
1,811,122	-				+1.5
1,811,122	-				-0.9
1,811,122	-				-0.1
1,811,122	-				+0.5
1,811,122	-				-1.9
1,811,144	+				-1.0
1,811,193	-				-0.1
1,811,249	-				-0.1
1,811,254	+				+0.3
1,811,275	+				-0.8
1,811,275	+				-0.9
1,811,275	+				+1.1
1,811,275	+				+0.5
1,811,276	-				-0.8
1,811,276	-				+0.9
1,811,276	-				-0.4
1,811,332	+				+0.6
1,811,332	+				-1.5
1,811,333	-				+0.3
1,811,333	-				-0.1
1,811,334	+				-0.1
1,811,334	+				+0.9
1,811,334	+				+0.4
1,811,334	+				+1.9
1,811,335	-		Sama_1496	0.10	+1.9
1,811,384	-		Sama_1496	0.21	+0.9
1,811,414	+		Sama_1496	0.28	+0.9
1,811,422	-		Sama_1496	0.30	-0.1
1,811,586	-		Sama_1496	0.67	-0.3
1,811,586	-		Sama_1496	0.67	+0.5
1,811,624	+		Sama_1496	0.75	+0.9
1,811,635	+		Sama_1496	0.78	+1.2
1,811,635	+		Sama_1496	0.78	+0.5
1,811,636	-		Sama_1496	0.78	-0.5
1,811,636	-		Sama_1496	0.78	-0.1
1,811,636	-		Sama_1496	0.78	+2.5
1,811,636	-		Sama_1496	0.78	-1.1
1,811,637	+		Sama_1496	0.78	-1.1
1,811,638	-		Sama_1496	0.78	-0.3
1,811,638	-		Sama_1496	0.78	-0.4
1,811,638	-		Sama_1496	0.78	+1.2
1,811,662	+		Sama_1496	0.84	+0.0
1,811,671	-		Sama_1496	0.86	+0.3
1,811,691	-				-0.5
1,811,792	+				+0.4
1,811,793	-				-1.1
1,811,793	-				+0.2
1,811,928	-	pflA	Sama_1497	0.18	+0.1
1,811,970	+	pflA	Sama_1497	0.24	+0.5
1,811,999	-	pflA	Sama_1497	0.28	+0.2
1,812,030	-	pflA	Sama_1497	0.32	+1.1
1,812,065	+	pflA	Sama_1497	0.37	-0.1
1,812,130	+	pflA	Sama_1497	0.46	-1.6
1,812,130	+	pflA	Sama_1497	0.46	+0.7
1,812,131	-	pflA	Sama_1497	0.46	+0.5
1,812,131	-	pflA	Sama_1497	0.46	-0.5
1,812,131	-	pflA	Sama_1497	0.46	+1.9
1,812,131	-	pflA	Sama_1497	0.46	-1.6
1,812,131	-	pflA	Sama_1497	0.46	-1.1
1,812,131	-	pflA	Sama_1497	0.46	-0.0
1,812,169	+	pflA	Sama_1497	0.51	-0.6
1,812,175	+	pflA	Sama_1497	0.52	-0.1
1,812,175	+	pflA	Sama_1497	0.52	+0.1
1,812,175	+	pflA	Sama_1497	0.52	-0.9
1,812,176	-	pflA	Sama_1497	0.52	-0.1
1,812,176	-	pflA	Sama_1497	0.52	-0.0
1,812,176	-	pflA	Sama_1497	0.52	-1.5
1,812,228	+	pflA	Sama_1497	0.59	+0.0
1,812,228	+	pflA	Sama_1497	0.59	-1.5
1,812,229	-	pflA	Sama_1497	0.59	+1.1
1,812,286	+	pflA	Sama_1497	0.67	+0.7
1,812,287	-	pflA	Sama_1497	0.67	-0.9
1,812,345	-	pflA	Sama_1497	0.75	+1.3
1,812,453	+	pflA	Sama_1497	0.89	+0.1
1,812,453	+	pflA	Sama_1497	0.89	-0.1
1,812,606	-				+0.9
1,812,620	+				-0.4
1,812,633	+				-0.5
1,812,633	+				+0.6
1,812,633	+				+0.9
1,812,634	-				+0.5
1,812,704	-				-1.7
1,812,704	-				-0.1
1,812,725	+				-0.7