Strain Fitness in Shewanella amazonensis SB2B around Sama_1343

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,634,760	+		Sama_1342	0.15	+0.9
1,634,839	+		Sama_1342	0.31	-0.7
1,634,898	+		Sama_1342	0.42	-0.2
1,634,898	+		Sama_1342	0.42	+0.3
1,634,943	+		Sama_1342	0.51	-1.2
1,634,944	-		Sama_1342	0.51	-0.4
1,634,944	-		Sama_1342	0.51	-0.3
1,634,944	-		Sama_1342	0.51	-0.7
1,635,000	+		Sama_1342	0.62	-0.5
1,635,001	-		Sama_1342	0.62	+0.5
1,635,083	+		Sama_1342	0.78	+2.4
1,635,083	+		Sama_1342	0.78	-1.4
1,635,138	+		Sama_1342	0.89	-0.1
1,635,138	+		Sama_1342	0.89	-0.1
1,635,138	+		Sama_1342	0.89	-1.1
1,635,147	+				-0.4
1,635,147	+				+1.2
1,635,147	+				-0.1
1,635,147	+				-0.7
1,635,148	-				-0.0
1,635,148	-				-1.7
1,635,177	-				-0.1
1,635,191	+				-0.5
1,635,192	-				+0.4
1,635,204	+				+0.1
1,635,211	+				-0.0
1,635,221	+				+0.4
1,635,222	-				+1.7
1,635,330	-				+1.1
1,635,339	-				-0.5
1,635,362	-				-1.0
1,635,362	-				+1.0
1,635,371	-				-2.2
1,635,371	-				-0.3
1,635,376	+				-1.2
1,635,377	-				-0.3
1,635,391	-				-0.9
1,635,393	-				-0.4
1,635,406	-				+1.0
1,635,420	-				-0.8
1,635,459	+				+1.1
1,635,463	+				+1.5
1,635,474	-				-0.8
1,635,543	+				+0.5
1,635,562	+				-0.1
1,635,568	-				+0.4
1,635,596	+				+0.0
1,635,599	+				-0.7
1,635,641	-				+0.1
1,635,745	-				-0.8
1,635,749	+				-0.1
1,635,811	-		Sama_1343	0.20	+0.7
1,635,847	-		Sama_1343	0.28	-0.7
1,635,894	+		Sama_1343	0.40	-0.2
1,635,926	-		Sama_1343	0.47	-3.1
1,636,167	+				-1.1
1,636,240	+				-1.2
1,636,248	+				-0.2
1,636,308	-		Sama_1344	0.18	+1.0
1,636,314	-		Sama_1344	0.19	-0.1
1,636,314	-		Sama_1344	0.19	+0.1
1,636,314	-		Sama_1344	0.19	-1.4
1,636,318	-		Sama_1344	0.20	-0.1
1,636,322	-		Sama_1344	0.21	-0.7
1,636,367	-		Sama_1344	0.33	+0.1
1,636,410	-		Sama_1344	0.44	-0.3
1,636,410	-		Sama_1344	0.44	+0.9
1,636,410	-		Sama_1344	0.44	-0.2
1,636,422	-		Sama_1344	0.47	+0.5
1,636,556	-		Sama_1344	0.81	-1.7
1,636,607	-				-1.0
1,636,633	+				-0.6
1,636,847	-		Sama_1345	0.25	-0.1
1,636,887	-		Sama_1345	0.34	-1.4
1,636,949	+		Sama_1345	0.47	+0.2
1,636,950	-		Sama_1345	0.47	-0.7
1,636,950	-		Sama_1345	0.47	+0.0
1,636,955	-		Sama_1345	0.48	-0.8
1,637,076	-		Sama_1345	0.73	-0.5
1,637,076	-		Sama_1345	0.73	+0.3