Strain Fitness in Shewanella amazonensis SB2B around Sama_1308

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,590,044	-		Sama_1306	0.22	+0.2
1,590,071	+		Sama_1306	0.25	+0.0
1,590,115	-		Sama_1306	0.31	+0.4
1,590,115	-		Sama_1306	0.31	+0.0
1,590,146	+		Sama_1306	0.35	+0.5
1,590,219	-		Sama_1306	0.45	+0.5
1,590,289	+		Sama_1306	0.54	-0.1
1,590,289	+		Sama_1306	0.54	-0.3
1,590,290	-		Sama_1306	0.54	-0.2
1,590,290	-		Sama_1306	0.54	-0.6
1,590,338	-		Sama_1306	0.61	-0.1
1,590,415	+		Sama_1306	0.71	+2.5
1,590,453	+		Sama_1306	0.76	-0.9
1,590,496	-		Sama_1306	0.81	-0.1
1,590,508	+		Sama_1306	0.83	+0.6
1,590,508	+		Sama_1306	0.83	-1.4
1,590,509	-		Sama_1306	0.83	+1.5
1,590,509	-		Sama_1306	0.83	-0.6
1,590,509	-		Sama_1306	0.83	-0.6
1,590,518	+		Sama_1306	0.84	-0.8
1,590,518	+		Sama_1306	0.84	-1.4
1,590,614	+				+0.9
1,590,615	-				+0.9
1,590,617	+				-1.1
1,590,617	+				-2.4
1,590,617	+				+0.9
1,590,618	-				+0.2
1,590,646	+				-1.4
1,590,646	+				-1.1
1,590,646	+				+1.4
1,590,647	-				+0.6
1,590,647	-				-1.1
1,590,647	-				+0.4
1,590,647	-				-0.2
1,590,657	-				+0.2
1,590,777	+		Sama_1307	0.30	+0.6
1,590,778	-		Sama_1307	0.31	+0.4
1,590,853	+				-1.1
1,590,853	+				-0.6
1,590,858	+				-0.5
1,590,875	+				-0.6
1,590,875	+				+0.1
1,590,877	+				+0.6
1,590,877	+				+0.3
1,590,877	+				-1.1
1,590,877	+				-0.1
1,590,877	+				-0.5
1,590,877	+				-0.4
1,590,878	-				+0.2
1,590,955	-				-0.4
1,590,987	+				+0.3
1,590,987	+				-1.0
1,590,987	+				+0.2
1,591,005	+		Sama_1308	0.15	-0.2
1,591,005	+		Sama_1308	0.15	+0.5
1,591,006	-		Sama_1308	0.15	-0.2
1,591,020	+		Sama_1308	0.19	+0.1
1,591,135	+		Sama_1308	0.50	-0.8
1,591,135	+		Sama_1308	0.50	+1.4
1,591,135	+		Sama_1308	0.50	+0.8
1,591,263	+		Sama_1308	0.84	+0.8
1,591,313	-				-0.1
1,591,313	-				-1.2
1,591,313	-				-1.1
1,591,313	-				-0.5
1,591,392	+				-1.5
1,591,392	+				-0.4
1,591,399	+				-0.6
1,591,471	+				-0.0
1,591,471	+				-1.8
1,591,471	+				+0.4
1,591,485	+				+0.2
1,591,497	+				+0.3
1,591,497	+				-0.3
1,591,497	+				+1.4
1,591,509	+				-0.8
1,591,510	-				+0.6
1,591,524	+				+0.7
1,591,525	-				+0.0
1,591,525	-				-0.6
1,591,525	-				+0.9
1,591,557	+		Sama_1309	0.13	-1.0
1,591,557	+		Sama_1309	0.13	+1.3
1,591,557	+		Sama_1309	0.13	+0.1
1,591,557	+		Sama_1309	0.13	-0.6
1,591,557	+		Sama_1309	0.13	+0.2
1,591,558	-		Sama_1309	0.13	-0.6
1,591,558	-		Sama_1309	0.13	+0.1
1,591,558	-		Sama_1309	0.13	-0.5
1,591,558	-		Sama_1309	0.13	-0.1
1,591,558	-		Sama_1309	0.13	-0.4
1,591,601	-		Sama_1309	0.21	-1.6
1,591,611	+		Sama_1309	0.23	+1.2
1,591,612	-		Sama_1309	0.23	-0.2
1,591,612	-		Sama_1309	0.23	-0.5
1,591,634	-		Sama_1309	0.27	+0.9
1,591,733	+		Sama_1309	0.45	-0.9
1,591,734	-		Sama_1309	0.45	-1.1
1,591,777	+		Sama_1309	0.53	-0.1
1,591,777	+		Sama_1309	0.53	+0.1
1,591,777	+		Sama_1309	0.53	-0.8
1,591,789	+		Sama_1309	0.55	+0.4
1,591,790	-		Sama_1309	0.56	-0.1
1,591,825	-		Sama_1309	0.62	-0.5
1,591,825	-		Sama_1309	0.62	-0.1
1,591,825	-		Sama_1309	0.62	-2.6
1,591,853	+		Sama_1309	0.67	+0.3
1,591,853	+		Sama_1309	0.67	+0.5
1,591,881	+		Sama_1309	0.72	-0.5
1,591,882	-		Sama_1309	0.73	+1.3
1,591,896	+		Sama_1309	0.75	-0.1
1,591,896	+		Sama_1309	0.75	+0.5
1,592,029	+				+0.7
1,592,030	-				-0.1
1,592,049	+				+0.3
1,592,049	+				+0.3
1,592,049	+				-1.9
1,592,049	+				-0.4
1,592,050	-				-0.3