Strain Fitness in Shewanella amazonensis SB2B around Sama_0970

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,172,086	+	prfC	Sama_0968	0.60	+0.5
1,172,087	-	prfC	Sama_0968	0.60	+0.7
1,172,100	+	prfC	Sama_0968	0.61	+0.2
1,172,101	-	prfC	Sama_0968	0.61	+0.1
1,172,171	+	prfC	Sama_0968	0.66	-0.5
1,172,216	+	prfC	Sama_0968	0.68	-0.5
1,172,258	+	prfC	Sama_0968	0.71	-0.3
1,172,258	+	prfC	Sama_0968	0.71	-0.5
1,172,258	+	prfC	Sama_0968	0.71	-1.5
1,172,259	-	prfC	Sama_0968	0.71	+0.6
1,172,259	-	prfC	Sama_0968	0.71	+0.4
1,172,259	-	prfC	Sama_0968	0.71	+0.7
1,172,377	+	prfC	Sama_0968	0.79	-0.1
1,172,377	+	prfC	Sama_0968	0.79	-0.2
1,172,377	+	prfC	Sama_0968	0.79	+0.1
1,172,378	-	prfC	Sama_0968	0.79	-0.1
1,172,435	+	prfC	Sama_0968	0.82	-0.0
1,172,436	-	prfC	Sama_0968	0.82	+0.4
1,172,436	-	prfC	Sama_0968	0.82	+0.3
1,172,473	+	prfC	Sama_0968	0.85	-1.5
1,172,473	+	prfC	Sama_0968	0.85	-1.1
1,172,473	+	prfC	Sama_0968	0.85	+1.1
1,172,473	+	prfC	Sama_0968	0.85	-0.4
1,172,473	+	prfC	Sama_0968	0.85	-0.7
1,172,474	-	prfC	Sama_0968	0.85	-0.5
1,172,496	+	prfC	Sama_0968	0.86	+1.6
1,172,498	+	prfC	Sama_0968	0.86	+0.1
1,172,498	+	prfC	Sama_0968	0.86	-0.6
1,172,498	+	prfC	Sama_0968	0.86	+0.2
1,172,499	-	prfC	Sama_0968	0.86	-0.0
1,172,499	-	prfC	Sama_0968	0.86	+0.5
1,172,510	+	prfC	Sama_0968	0.87	-0.8
1,172,511	-	prfC	Sama_0968	0.87	-0.8
1,172,511	-	prfC	Sama_0968	0.87	+0.2
1,172,511	-	prfC	Sama_0968	0.87	-2.0
1,172,514	+	prfC	Sama_0968	0.87	+0.0
1,172,515	-	prfC	Sama_0968	0.87	+2.0
1,172,515	-	prfC	Sama_0968	0.87	-0.6
1,172,515	-	prfC	Sama_0968	0.87	+0.3
1,172,550	+	prfC	Sama_0968	0.89	+0.3
1,172,550	+	prfC	Sama_0968	0.89	-0.5
1,172,551	-	prfC	Sama_0968	0.89	-1.9
1,172,551	-	prfC	Sama_0968	0.89	+0.3
1,172,551	-	prfC	Sama_0968	0.89	-0.2
1,172,551	-	prfC	Sama_0968	0.89	+0.5
1,172,588	+				+0.2
1,172,588	+				+0.6
1,172,588	+				-0.7
1,172,589	-				+0.2
1,172,634	+				-0.0
1,172,634	+				+1.4
1,172,634	+				-1.7
1,172,634	+				+0.3
1,172,635	-				-0.0
1,172,635	-				+1.1
1,172,635	-				+0.3
1,172,635	-				-0.2
1,172,635	-				+0.4
1,172,635	-				-0.2
1,172,635	-				-0.9
1,172,648	+				+0.8
1,172,648	+				-0.2
1,172,649	-				+0.1
1,172,649	-				+0.9
1,172,649	-				+0.1
1,172,715	+				-0.5
1,172,777	+				+0.2
1,172,777	+				+0.5
1,172,778	-				-0.8
1,172,778	-				+0.0
1,172,778	-				-0.9
1,172,778	-				-0.3
1,172,778	-				-0.0
1,173,006	+				-0.5
1,173,006	+				-0.4
1,173,006	+				+0.4
1,173,007	-				+0.8
1,173,007	-				-1.4
1,173,015	-				-0.6
1,173,015	-				+0.8
1,173,015	-				+1.4
1,173,028	-				+0.5
1,173,036	+				-0.8
1,173,037	-				-0.8
1,173,053	+				+0.8
1,173,054	-				+0.5
1,173,182	+		Sama_0970	0.13	+3.1
1,173,255	+		Sama_0970	0.22	+0.6
1,173,255	+		Sama_0970	0.22	+0.5
1,173,255	+		Sama_0970	0.22	+0.2
1,173,255	+		Sama_0970	0.22	+1.8
1,173,255	+		Sama_0970	0.22	+0.8
1,173,255	+		Sama_0970	0.22	+0.9
1,173,255	+		Sama_0970	0.22	-0.6
1,173,255	+		Sama_0970	0.22	-0.2
1,173,256	-		Sama_0970	0.22	+2.0
1,173,256	-		Sama_0970	0.22	+1.4
1,173,256	-		Sama_0970	0.22	+0.5
1,173,291	+		Sama_0970	0.26	+0.5
1,173,292	-		Sama_0970	0.27	-0.3
1,173,319	+		Sama_0970	0.30	+1.1
1,173,328	+		Sama_0970	0.31	+1.1
1,173,359	+		Sama_0970	0.35	-1.0
1,173,359	+		Sama_0970	0.35	-0.4
1,173,359	+		Sama_0970	0.35	-2.0
1,173,359	+		Sama_0970	0.35	-1.5
1,173,359	+		Sama_0970	0.35	+0.5
1,173,360	-		Sama_0970	0.35	+0.7
1,173,360	-		Sama_0970	0.35	+0.5
1,173,407	+		Sama_0970	0.41	+0.4
1,173,411	-		Sama_0970	0.42	+0.4
1,173,437	-		Sama_0970	0.45	+0.5
1,173,488	+		Sama_0970	0.52	+0.7
1,173,494	+		Sama_0970	0.52	-0.5
1,173,495	-		Sama_0970	0.52	+0.5
1,173,495	-		Sama_0970	0.52	+0.9
1,173,556	+		Sama_0970	0.60	-0.4
1,173,556	+		Sama_0970	0.60	-0.7
1,173,556	+		Sama_0970	0.60	-0.5
1,173,556	+		Sama_0970	0.60	-0.1
1,173,556	+		Sama_0970	0.60	+0.7
1,173,556	+		Sama_0970	0.60	-0.1
1,173,556	+		Sama_0970	0.60	+0.1
1,173,556	+		Sama_0970	0.60	-0.1
1,173,556	+		Sama_0970	0.60	-0.7
1,173,556	+		Sama_0970	0.60	-0.0
1,173,557	-		Sama_0970	0.60	+0.4
1,173,557	-		Sama_0970	0.60	-0.1
1,173,557	-		Sama_0970	0.60	-0.1
1,173,557	-		Sama_0970	0.60	+0.5
1,173,557	-		Sama_0970	0.60	-0.9
1,173,557	-		Sama_0970	0.60	+0.1
1,173,584	-		Sama_0970	0.64	-0.5
1,173,595	-		Sama_0970	0.65	-1.0
1,173,596	+		Sama_0970	0.65	-0.2
1,173,597	-		Sama_0970	0.66	+0.9
1,173,609	+		Sama_0970	0.67	-0.1
1,173,609	+		Sama_0970	0.67	+0.8
1,173,610	-		Sama_0970	0.67	-0.1
1,173,613	+		Sama_0970	0.68	+0.7
1,173,614	-		Sama_0970	0.68	-0.7
1,173,614	-		Sama_0970	0.68	+1.2
1,173,614	-		Sama_0970	0.68	+0.4
1,173,632	-		Sama_0970	0.70	+0.7
1,173,685	+		Sama_0970	0.77	+0.7
1,173,817	+				-0.9
1,173,817	+				-0.5
1,173,818	-				-0.5
1,173,818	-				-0.4
1,173,835	+				+0.2
1,173,865	-				+0.2
1,173,970	-				+1.3
1,173,974	+				+0.4
1,173,975	-				+1.1
1,173,976	+				-1.3
1,173,976	+				+0.1
1,173,976	+				-0.5
1,174,009	+				-0.6
1,174,041	+				+0.1
1,174,049	-				+1.5
1,174,049	-				+1.5
1,174,049	-				-0.7
1,174,049	-				+0.1
1,174,049	-				-0.2
1,174,050	+				-0.6
1,174,050	+				-1.0
1,174,050	+				-0.2
1,174,050	+				+0.1
1,174,050	+				-0.5
1,174,050	+				+0.7
1,174,051	-				+0.3
1,174,051	-				+1.5
1,174,053	+				+1.5
1,174,053	+				-0.0
1,174,080	+				+0.5
1,174,089	+				-1.7
1,174,109	-				+0.4
1,174,128	+				-1.2
1,174,129	-				+0.0
1,174,129	-				+0.9
1,174,129	-				-0.0
1,174,129	-				+0.3
1,174,154	-				+0.1
1,174,184	+		Sama_0971	0.11	-0.8
1,174,184	+		Sama_0971	0.11	+1.5
1,174,184	+		Sama_0971	0.11	+0.6
1,174,185	-		Sama_0971	0.11	-1.2
1,174,185	-		Sama_0971	0.11	-1.1
1,174,185	-		Sama_0971	0.11	+0.1
1,174,185	-		Sama_0971	0.11	-0.3
1,174,188	+		Sama_0971	0.12	-0.2
1,174,188	+		Sama_0971	0.12	+1.5
1,174,189	-		Sama_0971	0.12	+0.7
1,174,189	-		Sama_0971	0.12	+0.5
1,174,230	+		Sama_0971	0.15	-0.0
1,174,230	+		Sama_0971	0.15	-0.2
1,174,231	-		Sama_0971	0.15	-0.0
1,174,231	-		Sama_0971	0.15	+0.0
1,174,231	-		Sama_0971	0.15	+0.3
1,174,367	+		Sama_0971	0.26	+0.3
1,174,367	+		Sama_0971	0.26	-0.1
1,174,367	+		Sama_0971	0.26	-0.2
1,174,370	+		Sama_0971	0.26	+0.5
1,174,371	-		Sama_0971	0.26	+0.9
1,174,432	+		Sama_0971	0.31	+0.0
1,174,441	+		Sama_0971	0.32	+0.1
1,174,459	+		Sama_0971	0.33	-0.0
1,174,476	+		Sama_0971	0.34	+0.1
1,174,476	+		Sama_0971	0.34	+1.0
1,174,477	-		Sama_0971	0.34	-1.0
1,174,477	-		Sama_0971	0.34	+0.3
1,174,500	+		Sama_0971	0.36	-0.4
1,174,503	+		Sama_0971	0.37	+0.4
1,174,503	+		Sama_0971	0.37	-0.3
1,174,503	+		Sama_0971	0.37	-1.5
1,174,503	+		Sama_0971	0.37	-0.0
1,174,504	-		Sama_0971	0.37	-0.9
1,174,596	-		Sama_0971	0.44	-0.7
1,174,603	+		Sama_0971	0.44	-0.3
1,174,603	+		Sama_0971	0.44	-0.9
1,174,622	+		Sama_0971	0.46	+0.4
1,174,623	-		Sama_0971	0.46	-1.5
1,174,699	+		Sama_0971	0.52	+1.7
1,174,855	+		Sama_0971	0.64	-0.0