Strain Fitness in Shewanella amazonensis SB2B around Sama_0910

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,099,472	+		Sama_0909	0.20	-0.8
1,099,472	+		Sama_0909	0.20	+0.4
1,099,473	-		Sama_0909	0.20	+0.3
1,099,473	-		Sama_0909	0.20	+0.9
1,099,486	-		Sama_0909	0.21	-0.5
1,099,507	-		Sama_0909	0.23	-0.3
1,099,531	+		Sama_0909	0.25	+0.8
1,099,612	+		Sama_0909	0.33	-0.8
1,099,613	-		Sama_0909	0.33	-0.0
1,099,613	-		Sama_0909	0.33	+0.6
1,099,744	+		Sama_0909	0.45	+1.0
1,099,745	-		Sama_0909	0.45	+1.2
1,099,832	-		Sama_0909	0.53	+0.6
1,099,907	+		Sama_0909	0.60	-1.2
1,099,907	+		Sama_0909	0.60	+0.9
1,099,908	-		Sama_0909	0.60	+0.2
1,099,908	-		Sama_0909	0.60	+0.5
1,099,969	-		Sama_0909	0.65	+0.6
1,099,993	+		Sama_0909	0.67	-0.2
1,099,993	+		Sama_0909	0.67	+1.7
1,099,994	-		Sama_0909	0.67	-0.3
1,100,046	+		Sama_0909	0.72	-0.4
1,100,046	+		Sama_0909	0.72	-0.3
1,100,047	-		Sama_0909	0.72	+1.2
1,100,047	-		Sama_0909	0.72	-0.4
1,100,049	+		Sama_0909	0.73	-0.8
1,100,049	+		Sama_0909	0.73	+1.0
1,100,049	+		Sama_0909	0.73	+0.2
1,100,049	+		Sama_0909	0.73	+0.1
1,100,050	-		Sama_0909	0.73	-0.6
1,100,050	-		Sama_0909	0.73	-0.7
1,100,055	+		Sama_0909	0.73	+0.3
1,100,084	+		Sama_0909	0.76	+0.3
1,100,085	-		Sama_0909	0.76	-1.5
1,100,201	+		Sama_0909	0.86	-0.8
1,100,201	+		Sama_0909	0.86	+0.6
1,100,201	+		Sama_0909	0.86	+0.3
1,100,201	+		Sama_0909	0.86	+0.9
1,100,201	+		Sama_0909	0.86	+0.2
1,100,201	+		Sama_0909	0.86	-2.0
1,100,201	+		Sama_0909	0.86	+0.4
1,100,201	+		Sama_0909	0.86	+0.0
1,100,201	+		Sama_0909	0.86	-0.8
1,100,201	+		Sama_0909	0.86	+0.4
1,100,202	-		Sama_0909	0.86	-0.8
1,100,202	-		Sama_0909	0.86	-0.2
1,100,202	-		Sama_0909	0.86	+1.2
1,100,202	-		Sama_0909	0.86	-0.7
1,100,202	-		Sama_0909	0.86	+0.4
1,100,309	+				+2.2
1,100,330	+				-0.6
1,100,340	+				-0.7
1,100,396	+				+0.2
1,100,397	-				+1.3
1,100,398	+				+1.6
1,100,399	-				-0.7
1,100,422	-				-0.6
1,100,424	+				+0.2
1,100,424	+				-0.6
1,100,424	+				-0.2
1,100,428	-				-0.4
1,100,434	+				+0.5
1,100,463	+				-0.8
1,100,464	-				-0.1
1,100,496	+				-0.8
1,100,496	+				-0.5
1,100,497	-				+0.6
1,100,537	+		Sama_0910	0.14	-0.2
1,100,538	-		Sama_0910	0.14	+0.4
1,100,590	+		Sama_0910	0.23	+0.2
1,100,590	+		Sama_0910	0.23	-0.0
1,100,590	+		Sama_0910	0.23	-0.0
1,100,590	+		Sama_0910	0.23	-0.1
1,100,590	+		Sama_0910	0.23	+1.2
1,100,591	-		Sama_0910	0.24	-0.3
1,100,592	+		Sama_0910	0.24	+0.2
1,100,592	+		Sama_0910	0.24	+0.7
1,100,592	+		Sama_0910	0.24	-0.8
1,100,593	-		Sama_0910	0.24	+0.2
1,100,593	-		Sama_0910	0.24	+0.2
1,100,602	+		Sama_0910	0.26	-1.1
1,100,641	+		Sama_0910	0.33	+0.4
1,100,641	+		Sama_0910	0.33	+0.1
1,100,642	-		Sama_0910	0.33	-0.2
1,100,642	-		Sama_0910	0.33	+1.2
1,100,642	-		Sama_0910	0.33	+0.4
1,100,642	-		Sama_0910	0.33	+0.5
1,100,647	+		Sama_0910	0.34	-0.2
1,100,647	+		Sama_0910	0.34	+0.2
1,100,647	+		Sama_0910	0.34	+0.1
1,100,648	-		Sama_0910	0.34	+0.6
1,100,648	-		Sama_0910	0.34	+0.7
1,100,658	+		Sama_0910	0.36	+0.8
1,100,658	+		Sama_0910	0.36	+0.1
1,100,662	+		Sama_0910	0.37	+0.1
1,100,662	+		Sama_0910	0.37	-1.3
1,100,663	-		Sama_0910	0.37	+1.2
1,100,663	-		Sama_0910	0.37	-0.4
1,100,732	+		Sama_0910	0.50	+0.4
1,100,733	-		Sama_0910	0.50	-0.4
1,100,751	+		Sama_0910	0.53	+0.5
1,100,751	+		Sama_0910	0.53	+0.2
1,100,752	-		Sama_0910	0.53	-0.2
1,100,752	-		Sama_0910	0.53	-0.1
1,100,752	-		Sama_0910	0.53	+0.5
1,100,752	-		Sama_0910	0.53	+1.2
1,100,757	+		Sama_0910	0.54	+0.4
1,100,758	-		Sama_0910	0.54	-1.2
1,100,798	+		Sama_0910	0.62	+0.2
1,100,798	+		Sama_0910	0.62	+0.0
1,100,799	-		Sama_0910	0.62	-1.0
1,100,806	+		Sama_0910	0.63	+0.3
1,100,806	+		Sama_0910	0.63	+0.4
1,100,829	+		Sama_0910	0.68	+0.9
1,100,829	+		Sama_0910	0.68	+0.8
1,100,829	+		Sama_0910	0.68	+1.0
1,100,829	+		Sama_0910	0.68	+0.4
1,100,829	+		Sama_0910	0.68	+1.2
1,100,829	+		Sama_0910	0.68	+0.8
1,100,829	+		Sama_0910	0.68	+0.3
1,100,829	+		Sama_0910	0.68	-0.4
1,100,829	+		Sama_0910	0.68	+0.5
1,100,829	+		Sama_0910	0.68	+0.2
1,100,829	+		Sama_0910	0.68	+0.4
1,100,829	+		Sama_0910	0.68	+0.2
1,100,829	+		Sama_0910	0.68	+0.8
1,100,830	-		Sama_0910	0.68	+0.2
1,100,830	-		Sama_0910	0.68	-1.8
1,100,830	-		Sama_0910	0.68	+0.7
1,100,830	-		Sama_0910	0.68	-0.5
1,100,830	-		Sama_0910	0.68	+0.4
1,100,830	-		Sama_0910	0.68	-0.5
1,100,830	-		Sama_0910	0.68	+0.2
1,100,830	-		Sama_0910	0.68	+0.5
1,100,830	-		Sama_0910	0.68	+1.4
1,100,877	+		Sama_0910	0.76	+0.6
1,100,877	+		Sama_0910	0.76	+0.2
1,100,877	+		Sama_0910	0.76	+0.2
1,100,877	+		Sama_0910	0.76	-1.5
1,100,878	-		Sama_0910	0.77	-0.1
1,100,939	+		Sama_0910	0.88	+0.0
1,100,940	-		Sama_0910	0.88	-0.5
1,101,020	+				+1.0
1,101,062	+				+0.7
1,101,086	+		Sama_0911	0.13	-0.4
1,101,087	-		Sama_0911	0.14	-0.4
1,101,105	+		Sama_0911	0.24	+0.2
1,101,186	+		Sama_0911	0.67	-0.1
1,101,206	-		Sama_0911	0.78	+1.0
1,101,206	-		Sama_0911	0.78	-0.4
1,101,225	+		Sama_0911	0.88	+0.4
1,101,226	-		Sama_0911	0.89	+0.2
1,101,226	-		Sama_0911	0.89	+1.9
1,101,226	-		Sama_0911	0.89	+0.5
1,101,230	+				-0.3
1,101,230	+				-0.1
1,101,231	-				-1.8
1,101,231	-				-1.4
1,101,231	-				-0.4
1,101,231	-				+0.2
1,101,231	-				+0.2
1,101,235	+				+1.0
1,101,236	-				-0.8
1,101,236	-				-0.2
1,101,265	+				+1.5
1,101,265	+				-1.4
1,101,266	-				-0.3
1,101,282	+				-0.1
1,101,283	-				+0.3
1,101,286	+				-0.3
1,101,287	-				+0.5
1,101,287	-				-0.7
1,101,287	-				+0.2
1,101,389	-				-0.2