Strain Fitness in Shewanella amazonensis SB2B around Sama_0749

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0748 and Sama_0749 are separated by 80 nucleotidesSama_0749 and Sama_0750 are separated by 155 nucleotides Sama_0748: Sama_0748 - response regulator receiver protein (RefSeq), at 923,436 to 924,374 _0748 Sama_0749: Sama_0749 - hypothetical protein (RefSeq), at 924,455 to 924,718 _0749 Sama_0750: Sama_0750 - catalase-like protein (RefSeq), at 924,874 to 925,872 _0750 Position (kb) 924 925Strain fitness (log2 ratio) -2 -1 0 1at 923.459 kb on + strandat 923.459 kb on + strandat 923.460 kb on - strandat 923.460 kb on - strandat 923.504 kb on + strandat 923.505 kb on - strandat 923.524 kb on + strandat 923.525 kb on - strandat 923.593 kb on + strand, within Sama_0748at 923.593 kb on + strand, within Sama_0748at 923.593 kb on + strand, within Sama_0748at 923.594 kb on - strand, within Sama_0748at 923.594 kb on - strand, within Sama_0748at 923.697 kb on - strand, within Sama_0748at 923.777 kb on + strand, within Sama_0748at 923.777 kb on + strand, within Sama_0748at 923.777 kb on + strand, within Sama_0748at 923.783 kb on + strand, within Sama_0748at 923.783 kb on + strand, within Sama_0748at 923.784 kb on - strand, within Sama_0748at 923.792 kb on + strand, within Sama_0748at 923.798 kb on + strand, within Sama_0748at 923.854 kb on + strand, within Sama_0748at 923.854 kb on + strand, within Sama_0748at 923.854 kb on + strand, within Sama_0748at 923.854 kb on + strand, within Sama_0748at 923.855 kb on - strand, within Sama_0748at 923.855 kb on - strand, within Sama_0748at 923.855 kb on - strand, within Sama_0748at 923.855 kb on - strand, within Sama_0748at 923.919 kb on + strand, within Sama_0748at 923.919 kb on + strand, within Sama_0748at 923.920 kb on - strand, within Sama_0748at 923.920 kb on - strand, within Sama_0748at 923.963 kb on + strand, within Sama_0748at 923.963 kb on + strand, within Sama_0748at 923.963 kb on + strand, within Sama_0748at 923.964 kb on - strand, within Sama_0748at 923.991 kb on + strand, within Sama_0748at 923.991 kb on + strand, within Sama_0748at 923.991 kb on + strand, within Sama_0748at 924.004 kb on - strand, within Sama_0748at 924.004 kb on - strand, within Sama_0748at 924.004 kb on - strand, within Sama_0748at 924.004 kb on - strand, within Sama_0748at 924.105 kb on + strand, within Sama_0748at 924.105 kb on + strand, within Sama_0748at 924.106 kb on - strand, within Sama_0748at 924.273 kb on + strand, within Sama_0748at 924.308 kb on + strandat 924.313 kb on + strandat 924.313 kb on + strandat 924.314 kb on - strandat 924.314 kb on - strandat 924.314 kb on - strandat 924.318 kb on + strandat 924.318 kb on + strandat 924.319 kb on - strandat 924.319 kb on - strandat 924.319 kb on - strandat 924.319 kb on - strandat 924.319 kb on - strandat 924.319 kb on - strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.353 kb on + strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.354 kb on - strandat 924.383 kb on - strandat 924.457 kb on - strandat 924.538 kb on + strand, within Sama_0749at 924.598 kb on + strand, within Sama_0749at 924.598 kb on + strand, within Sama_0749at 924.598 kb on + strand, within Sama_0749at 924.599 kb on - strand, within Sama_0749at 924.599 kb on - strand, within Sama_0749at 924.599 kb on - strand, within Sama_0749at 924.599 kb on - strand, within Sama_0749at 924.665 kb on + strand, within Sama_0749at 924.665 kb on + strand, within Sama_0749at 924.665 kb on + strand, within Sama_0749at 924.665 kb on + strand, within Sama_0749at 924.666 kb on - strand, within Sama_0749at 924.706 kb on + strandat 924.764 kb on - strandat 924.820 kb on - strandat 924.820 kb on - strandat 924.875 kb on + strandat 924.875 kb on + strandat 924.876 kb on - strandat 924.876 kb on - strandat 924.876 kb on - strandat 924.876 kb on - strandat 924.888 kb on + strandat 924.902 kb on + strandat 924.926 kb on - strandat 924.945 kb on + strandat 924.961 kb on + strandat 924.961 kb on + strandat 925.030 kb on + strand, within Sama_0750at 925.031 kb on - strand, within Sama_0750at 925.031 kb on - strand, within Sama_0750at 925.031 kb on - strand, within Sama_0750at 925.092 kb on + strand, within Sama_0750at 925.092 kb on + strand, within Sama_0750at 925.092 kb on + strand, within Sama_0750at 925.093 kb on - strand, within Sama_0750at 925.093 kb on - strand, within Sama_0750at 925.095 kb on + strand, within Sama_0750at 925.095 kb on + strand, within Sama_0750at 925.096 kb on - strand, within Sama_0750at 925.121 kb on + strand, within Sama_0750at 925.121 kb on + strand, within Sama_0750at 925.122 kb on - strand, within Sama_0750at 925.122 kb on - strand, within Sama_0750at 925.152 kb on + strand, within Sama_0750at 925.153 kb on - strand, within Sama_0750at 925.210 kb on - strand, within Sama_0750at 925.298 kb on + strand, within Sama_0750at 925.298 kb on + strand, within Sama_0750at 925.298 kb on + strand, within Sama_0750at 925.299 kb on - strand, within Sama_0750at 925.309 kb on + strand, within Sama_0750at 925.310 kb on - strand, within Sama_0750at 925.310 kb on - strand, within Sama_0750at 925.364 kb on + strand, within Sama_0750at 925.364 kb on + strand, within Sama_0750at 925.364 kb on + strand, within Sama_0750at 925.365 kb on - strand, within Sama_0750at 925.365 kb on - strand, within Sama_0750at 925.365 kb on - strand, within Sama_0750at 925.365 kb on - strand, within Sama_0750at 925.365 kb on - strand, within Sama_0750at 925.506 kb on + strand, within Sama_0750at 925.506 kb on + strand, within Sama_0750at 925.506 kb on + strand, within Sama_0750at 925.506 kb on + strand, within Sama_0750at 925.507 kb on - strand, within Sama_0750at 925.507 kb on - strand, within Sama_0750at 925.507 kb on - strand, within Sama_0750at 925.542 kb on + strand, within Sama_0750at 925.543 kb on - strand, within Sama_0750at 925.567 kb on + strand, within Sama_0750at 925.567 kb on + strand, within Sama_0750at 925.568 kb on - strand, within Sama_0750at 925.588 kb on + strand, within Sama_0750at 925.612 kb on - strand, within Sama_0750at 925.638 kb on + strand, within Sama_0750at 925.686 kb on + strand, within Sama_0750

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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923,459 + -0.4
923,459 + +1.7
923,460 - +0.7
923,460 - +0.7
923,504 + +0.2
923,505 - -0.0
923,524 + -0.1
923,525 - +1.2
923,593 + Sama_0748 0.17 -0.6
923,593 + Sama_0748 0.17 -0.5
923,593 + Sama_0748 0.17 +0.1
923,594 - Sama_0748 0.17 -0.8
923,594 - Sama_0748 0.17 +0.5
923,697 - Sama_0748 0.28 -0.5
923,777 + Sama_0748 0.36 -0.1
923,777 + Sama_0748 0.36 -0.0
923,777 + Sama_0748 0.36 +0.6
923,783 + Sama_0748 0.37 +0.5
923,783 + Sama_0748 0.37 +0.2
923,784 - Sama_0748 0.37 +0.4
923,792 + Sama_0748 0.38 +1.0
923,798 + Sama_0748 0.39 -0.5
923,854 + Sama_0748 0.45 +0.0
923,854 + Sama_0748 0.45 +1.1
923,854 + Sama_0748 0.45 -0.4
923,854 + Sama_0748 0.45 +0.3
923,855 - Sama_0748 0.45 -0.4
923,855 - Sama_0748 0.45 -1.5
923,855 - Sama_0748 0.45 +0.5
923,855 - Sama_0748 0.45 -1.8
923,919 + Sama_0748 0.51 +0.2
923,919 + Sama_0748 0.51 +0.1
923,920 - Sama_0748 0.52 -1.0
923,920 - Sama_0748 0.52 +0.8
923,963 + Sama_0748 0.56 -1.2
923,963 + Sama_0748 0.56 -0.1
923,963 + Sama_0748 0.56 -0.1
923,964 - Sama_0748 0.56 -1.2
923,991 + Sama_0748 0.59 +0.2
923,991 + Sama_0748 0.59 -0.8
923,991 + Sama_0748 0.59 -0.4
924,004 - Sama_0748 0.60 -0.9
924,004 - Sama_0748 0.60 -1.1
924,004 - Sama_0748 0.60 -0.6
924,004 - Sama_0748 0.60 -2.5
924,105 + Sama_0748 0.71 +0.6
924,105 + Sama_0748 0.71 -0.3
924,106 - Sama_0748 0.71 +0.4
924,273 + Sama_0748 0.89 +0.8
924,308 + -0.0
924,313 + -0.9
924,313 + +0.5
924,314 - +0.4
924,314 - +0.6
924,314 - -0.8
924,318 + +0.2
924,318 + +0.2
924,319 - -1.0
924,319 - -0.3
924,319 - -0.4
924,319 - +1.5
924,319 - +0.2
924,319 - +0.2
924,353 + -0.8
924,353 + -0.1
924,353 + -0.9
924,353 + -0.0
924,353 + +0.3
924,353 + -0.1
924,353 + +0.8
924,353 + -1.7
924,353 + -0.4
924,353 + +0.2
924,353 + +0.1
924,353 + -0.3
924,353 + +0.5
924,353 + -0.2
924,353 + +0.4
924,353 + -0.5
924,353 + -0.1
924,353 + -0.2
924,354 - +0.2
924,354 - +0.0
924,354 - -0.6
924,354 - +1.5
924,354 - -0.4
924,354 - +0.2
924,354 - -0.1
924,354 - -0.5
924,354 - +0.1
924,354 - -0.2
924,354 - -0.4
924,354 - +1.1
924,383 - +1.1
924,457 - +0.9
924,538 + Sama_0749 0.31 +0.8
924,598 + Sama_0749 0.54 +0.5
924,598 + Sama_0749 0.54 -0.1
924,598 + Sama_0749 0.54 -0.6
924,599 - Sama_0749 0.55 -0.4
924,599 - Sama_0749 0.55 +0.1
924,599 - Sama_0749 0.55 -0.4
924,599 - Sama_0749 0.55 +0.2
924,665 + Sama_0749 0.80 +0.2
924,665 + Sama_0749 0.80 -0.6
924,665 + Sama_0749 0.80 +1.4
924,665 + Sama_0749 0.80 +0.5
924,666 - Sama_0749 0.80 +0.7
924,706 + -0.1
924,764 - +0.4
924,820 - +0.2
924,820 - +0.8
924,875 + -1.2
924,875 + +0.8
924,876 - -0.3
924,876 - +0.4
924,876 - +1.2
924,876 - +1.0
924,888 + +1.0
924,902 + -0.8
924,926 - +0.8
924,945 + +0.3
924,961 + -0.6
924,961 + -1.5
925,030 + Sama_0750 0.16 -0.1
925,031 - Sama_0750 0.16 +1.0
925,031 - Sama_0750 0.16 +0.1
925,031 - Sama_0750 0.16 +0.4
925,092 + Sama_0750 0.22 -0.4
925,092 + Sama_0750 0.22 +0.2
925,092 + Sama_0750 0.22 +0.2
925,093 - Sama_0750 0.22 +0.5
925,093 - Sama_0750 0.22 -0.1
925,095 + Sama_0750 0.22 +0.2
925,095 + Sama_0750 0.22 -1.6
925,096 - Sama_0750 0.22 +1.4
925,121 + Sama_0750 0.25 +0.2
925,121 + Sama_0750 0.25 +0.0
925,122 - Sama_0750 0.25 +0.1
925,122 - Sama_0750 0.25 +0.8
925,152 + Sama_0750 0.28 -0.6
925,153 - Sama_0750 0.28 -0.1
925,210 - Sama_0750 0.34 +0.3
925,298 + Sama_0750 0.42 +1.0
925,298 + Sama_0750 0.42 -0.9
925,298 + Sama_0750 0.42 +0.6
925,299 - Sama_0750 0.43 -0.3
925,309 + Sama_0750 0.44 -0.5
925,310 - Sama_0750 0.44 +0.5
925,310 - Sama_0750 0.44 +0.3
925,364 + Sama_0750 0.49 +0.2
925,364 + Sama_0750 0.49 +1.0
925,364 + Sama_0750 0.49 -0.2
925,365 - Sama_0750 0.49 +0.2
925,365 - Sama_0750 0.49 +0.0
925,365 - Sama_0750 0.49 +0.4
925,365 - Sama_0750 0.49 -0.1
925,365 - Sama_0750 0.49 +0.6
925,506 + Sama_0750 0.63 +1.5
925,506 + Sama_0750 0.63 +0.5
925,506 + Sama_0750 0.63 +1.2
925,506 + Sama_0750 0.63 -1.6
925,507 - Sama_0750 0.63 +0.3
925,507 - Sama_0750 0.63 +1.2
925,507 - Sama_0750 0.63 +1.0
925,542 + Sama_0750 0.67 +1.2
925,543 - Sama_0750 0.67 -0.5
925,567 + Sama_0750 0.69 +0.2
925,567 + Sama_0750 0.69 -1.2
925,568 - Sama_0750 0.69 +0.3
925,588 + Sama_0750 0.71 +0.6
925,612 - Sama_0750 0.74 -0.8
925,638 + Sama_0750 0.76 +0.1
925,686 + Sama_0750 0.81 +0.2

Or see this region's nucleotide sequence