Strain Fitness in Shewanella amazonensis SB2B around Sama_0637

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0636 and Sama_0637 are separated by 67 nucleotidesSama_0637 and Sama_0638 overlap by 10 nucleotides Sama_0636: Sama_0636 - chromate transporter (RefSeq), at 792,246 to 793,391 _0636 Sama_0637: Sama_0637 - hypothetical protein (RefSeq), at 793,459 to 794,064 _0637 Sama_0638: Sama_0638 - TPR domain-containing protein (RefSeq), at 794,055 to 795,434 _0638 Position (kb) 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 792.479 kb on + strand, within Sama_0636at 792.489 kb on - strand, within Sama_0636at 792.489 kb on - strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.513 kb on + strand, within Sama_0636at 792.514 kb on - strand, within Sama_0636at 792.514 kb on - strand, within Sama_0636at 792.514 kb on - strand, within Sama_0636at 792.514 kb on - strand, within Sama_0636at 792.514 kb on - strand, within Sama_0636at 792.581 kb on + strand, within Sama_0636at 792.582 kb on - strand, within Sama_0636at 792.582 kb on - strand, within Sama_0636at 792.665 kb on + strand, within Sama_0636at 792.665 kb on + strand, within Sama_0636at 792.665 kb on + strand, within Sama_0636at 792.666 kb on - strand, within Sama_0636at 792.682 kb on + strand, within Sama_0636at 792.682 kb on + strand, within Sama_0636at 792.682 kb on + strand, within Sama_0636at 792.682 kb on + strand, within Sama_0636at 792.683 kb on - strand, within Sama_0636at 792.724 kb on + strand, within Sama_0636at 792.825 kb on - strand, within Sama_0636at 792.849 kb on + strand, within Sama_0636at 792.849 kb on + strand, within Sama_0636at 793.005 kb on + strand, within Sama_0636at 793.005 kb on + strand, within Sama_0636at 793.005 kb on + strand, within Sama_0636at 793.041 kb on - strand, within Sama_0636at 793.115 kb on + strand, within Sama_0636at 793.135 kb on + strand, within Sama_0636at 793.136 kb on - strand, within Sama_0636at 793.136 kb on - strand, within Sama_0636at 793.136 kb on - strand, within Sama_0636at 793.136 kb on - strand, within Sama_0636at 793.136 kb on - strand, within Sama_0636at 793.136 kb on - strand, within Sama_0636at 793.210 kb on + strand, within Sama_0636at 793.211 kb on - strand, within Sama_0636at 793.249 kb on - strand, within Sama_0636at 793.249 kb on - strand, within Sama_0636at 793.321 kb on + strandat 793.407 kb on + strandat 793.443 kb on - strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.461 kb on - strandat 793.562 kb on + strand, within Sama_0637at 793.562 kb on + strand, within Sama_0637at 793.562 kb on + strand, within Sama_0637at 793.562 kb on + strand, within Sama_0637at 793.562 kb on + strand, within Sama_0637at 793.562 kb on + strand, within Sama_0637at 793.563 kb on - strand, within Sama_0637at 793.563 kb on - strand, within Sama_0637at 793.563 kb on - strand, within Sama_0637at 793.563 kb on - strand, within Sama_0637at 793.565 kb on + strand, within Sama_0637at 793.565 kb on + strand, within Sama_0637at 793.566 kb on - strand, within Sama_0637at 793.566 kb on - strand, within Sama_0637at 793.566 kb on - strand, within Sama_0637at 793.566 kb on - strand, within Sama_0637at 793.617 kb on - strand, within Sama_0637at 793.617 kb on - strand, within Sama_0637at 793.617 kb on - strand, within Sama_0637at 793.617 kb on - strand, within Sama_0637at 793.625 kb on + strand, within Sama_0637at 793.625 kb on + strand, within Sama_0637at 793.625 kb on + strand, within Sama_0637at 793.626 kb on - strand, within Sama_0637at 793.626 kb on - strand, within Sama_0637at 793.626 kb on - strand, within Sama_0637at 793.737 kb on + strand, within Sama_0637at 793.797 kb on + strand, within Sama_0637at 793.798 kb on - strand, within Sama_0637at 793.798 kb on - strand, within Sama_0637at 793.798 kb on - strand, within Sama_0637at 793.801 kb on + strand, within Sama_0637at 793.801 kb on + strand, within Sama_0637at 793.801 kb on + strand, within Sama_0637at 793.801 kb on + strand, within Sama_0637at 793.801 kb on + strand, within Sama_0637at 793.801 kb on + strand, within Sama_0637at 793.802 kb on - strand, within Sama_0637at 793.802 kb on - strand, within Sama_0637at 793.802 kb on - strand, within Sama_0637at 793.802 kb on - strand, within Sama_0637at 793.802 kb on - strand, within Sama_0637at 793.914 kb on + strand, within Sama_0637at 793.980 kb on - strand, within Sama_0637at 793.980 kb on - strand, within Sama_0637at 794.052 kb on + strandat 794.052 kb on + strandat 794.066 kb on + strandat 794.066 kb on + strandat 794.087 kb on - strandat 794.087 kb on - strandat 794.145 kb on + strandat 794.145 kb on + strandat 794.145 kb on + strandat 794.145 kb on + strandat 794.145 kb on + strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.146 kb on - strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.152 kb on - strandat 794.152 kb on - strandat 794.152 kb on - strandat 794.178 kb on - strandat 794.186 kb on - strandat 794.186 kb on - strandat 794.186 kb on - strandat 794.250 kb on + strand, within Sama_0638at 794.250 kb on + strand, within Sama_0638at 794.268 kb on + strand, within Sama_0638at 794.268 kb on + strand, within Sama_0638at 794.268 kb on + strand, within Sama_0638at 794.269 kb on - strand, within Sama_0638at 794.269 kb on - strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.271 kb on + strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.272 kb on - strand, within Sama_0638at 794.368 kb on + strand, within Sama_0638at 794.369 kb on - strand, within Sama_0638at 794.369 kb on - strand, within Sama_0638at 794.369 kb on - strand, within Sama_0638at 794.471 kb on + strand, within Sama_0638at 794.521 kb on + strand, within Sama_0638at 794.521 kb on + strand, within Sama_0638at 794.522 kb on - strand, within Sama_0638at 794.522 kb on - strand, within Sama_0638at 794.522 kb on - strand, within Sama_0638at 794.522 kb on - strand, within Sama_0638at 794.561 kb on + strand, within Sama_0638at 794.616 kb on + strand, within Sama_0638at 794.617 kb on - strand, within Sama_0638at 794.617 kb on - strand, within Sama_0638at 794.646 kb on + strand, within Sama_0638at 794.647 kb on - strand, within Sama_0638at 794.647 kb on - strand, within Sama_0638at 794.670 kb on - strand, within Sama_0638at 794.716 kb on - strand, within Sama_0638at 794.731 kb on + strand, within Sama_0638at 794.731 kb on + strand, within Sama_0638at 794.732 kb on - strand, within Sama_0638at 794.774 kb on + strand, within Sama_0638at 794.775 kb on - strand, within Sama_0638at 794.811 kb on - strand, within Sama_0638at 794.811 kb on - strand, within Sama_0638at 794.811 kb on - strand, within Sama_0638at 794.824 kb on + strand, within Sama_0638at 794.827 kb on + strand, within Sama_0638at 794.827 kb on + strand, within Sama_0638at 794.828 kb on - strand, within Sama_0638at 794.828 kb on - strand, within Sama_0638at 794.833 kb on + strand, within Sama_0638at 794.841 kb on + strand, within Sama_0638at 794.842 kb on - strand, within Sama_0638at 794.886 kb on + strand, within Sama_0638at 794.967 kb on + strand, within Sama_0638at 795.013 kb on + strand, within Sama_0638at 795.014 kb on - strand, within Sama_0638at 795.025 kb on + strand, within Sama_0638at 795.025 kb on + strand, within Sama_0638at 795.026 kb on - strand, within Sama_0638at 795.026 kb on - strand, within Sama_0638at 795.040 kb on + strand, within Sama_0638at 795.048 kb on + strand, within Sama_0638at 795.049 kb on - strand, within Sama_0638at 795.049 kb on - strand, within Sama_0638at 795.049 kb on - strand, within Sama_0638

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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792,479 + Sama_0636 0.20 +0.0
792,489 - Sama_0636 0.21 -0.1
792,489 - Sama_0636 0.21 +0.2
792,513 + Sama_0636 0.23 -0.2
792,513 + Sama_0636 0.23 +0.1
792,513 + Sama_0636 0.23 +0.0
792,513 + Sama_0636 0.23 -0.9
792,513 + Sama_0636 0.23 -0.4
792,513 + Sama_0636 0.23 -0.4
792,513 + Sama_0636 0.23 -0.1
792,513 + Sama_0636 0.23 +1.1
792,513 + Sama_0636 0.23 +0.6
792,513 + Sama_0636 0.23 -1.7
792,513 + Sama_0636 0.23 +0.3
792,514 - Sama_0636 0.23 -0.5
792,514 - Sama_0636 0.23 +0.1
792,514 - Sama_0636 0.23 -1.1
792,514 - Sama_0636 0.23 -0.1
792,514 - Sama_0636 0.23 +0.2
792,581 + Sama_0636 0.29 -1.0
792,582 - Sama_0636 0.29 -0.8
792,582 - Sama_0636 0.29 +0.4
792,665 + Sama_0636 0.37 +0.1
792,665 + Sama_0636 0.37 -0.3
792,665 + Sama_0636 0.37 +0.1
792,666 - Sama_0636 0.37 -0.6
792,682 + Sama_0636 0.38 -0.2
792,682 + Sama_0636 0.38 +0.4
792,682 + Sama_0636 0.38 -0.3
792,682 + Sama_0636 0.38 +0.9
792,683 - Sama_0636 0.38 +1.3
792,724 + Sama_0636 0.42 +0.6
792,825 - Sama_0636 0.51 -1.2
792,849 + Sama_0636 0.53 -0.8
792,849 + Sama_0636 0.53 -0.7
793,005 + Sama_0636 0.66 +0.9
793,005 + Sama_0636 0.66 -0.7
793,005 + Sama_0636 0.66 +0.9
793,041 - Sama_0636 0.69 +0.8
793,115 + Sama_0636 0.76 +0.8
793,135 + Sama_0636 0.78 -1.4
793,136 - Sama_0636 0.78 -0.6
793,136 - Sama_0636 0.78 -3.3
793,136 - Sama_0636 0.78 -0.5
793,136 - Sama_0636 0.78 -0.9
793,136 - Sama_0636 0.78 +0.5
793,136 - Sama_0636 0.78 -0.7
793,210 + Sama_0636 0.84 +1.1
793,211 - Sama_0636 0.84 +0.4
793,249 - Sama_0636 0.88 -0.5
793,249 - Sama_0636 0.88 -0.8
793,321 + +1.3
793,407 + +0.6
793,443 - -1.2
793,460 + +0.0
793,460 + +0.5
793,460 + -0.5
793,460 + +0.3
793,460 + -1.1
793,460 + -0.4
793,460 + +0.1
793,460 + -0.1
793,460 + -0.1
793,460 + +0.3
793,460 + -1.2
793,461 - -1.3
793,461 - -0.4
793,461 - -0.4
793,461 - -0.0
793,461 - -0.5
793,461 - +0.2
793,461 - -0.1
793,461 - +1.7
793,461 - -0.2
793,461 - -0.0
793,562 + Sama_0637 0.17 -1.5
793,562 + Sama_0637 0.17 -0.7
793,562 + Sama_0637 0.17 -2.5
793,562 + Sama_0637 0.17 -0.6
793,562 + Sama_0637 0.17 -1.8
793,562 + Sama_0637 0.17 -1.4
793,563 - Sama_0637 0.17 -0.4
793,563 - Sama_0637 0.17 -1.5
793,563 - Sama_0637 0.17 -0.6
793,563 - Sama_0637 0.17 -1.0
793,565 + Sama_0637 0.17 -2.3
793,565 + Sama_0637 0.17 -1.2
793,566 - Sama_0637 0.18 -2.3
793,566 - Sama_0637 0.18 -1.1
793,566 - Sama_0637 0.18 -0.7
793,566 - Sama_0637 0.18 -2.1
793,617 - Sama_0637 0.26 -0.7
793,617 - Sama_0637 0.26 -2.3
793,617 - Sama_0637 0.26 -1.9
793,617 - Sama_0637 0.26 -0.3
793,625 + Sama_0637 0.27 -3.4
793,625 + Sama_0637 0.27 -1.3
793,625 + Sama_0637 0.27 -0.4
793,626 - Sama_0637 0.28 +0.5
793,626 - Sama_0637 0.28 -1.3
793,626 - Sama_0637 0.28 -2.9
793,737 + Sama_0637 0.46 -1.1
793,797 + Sama_0637 0.56 -2.2
793,798 - Sama_0637 0.56 -0.8
793,798 - Sama_0637 0.56 -1.8
793,798 - Sama_0637 0.56 -1.4
793,801 + Sama_0637 0.56 -1.0
793,801 + Sama_0637 0.56 -0.8
793,801 + Sama_0637 0.56 +1.3
793,801 + Sama_0637 0.56 -0.7
793,801 + Sama_0637 0.56 -1.4
793,801 + Sama_0637 0.56 +0.0
793,802 - Sama_0637 0.57 -1.1
793,802 - Sama_0637 0.57 -2.1
793,802 - Sama_0637 0.57 -0.1
793,802 - Sama_0637 0.57 +1.8
793,802 - Sama_0637 0.57 -2.1
793,914 + Sama_0637 0.75 -0.5
793,980 - Sama_0637 0.86 -2.2
793,980 - Sama_0637 0.86 -1.4
794,052 + -0.9
794,052 + -0.6
794,066 + -1.2
794,066 + -2.5
794,087 - -0.3
794,087 - -0.1
794,145 + +0.3
794,145 + -2.3
794,145 + +0.5
794,145 + +0.5
794,145 + -0.1
794,146 - -0.7
794,146 - -1.3
794,146 - -0.6
794,146 - -0.4
794,146 - +0.1
794,146 - -0.3
794,146 - -0.1
794,146 - +0.9
794,146 - -0.9
794,146 - -0.2
794,146 - -0.6
794,151 + +0.0
794,151 + +0.8
794,151 + -0.9
794,151 + -0.9
794,152 - -2.5
794,152 - -1.4
794,152 - -0.3
794,178 - -1.5
794,186 - -0.3
794,186 - -3.4
794,186 - -0.2
794,250 + Sama_0638 0.14 -0.1
794,250 + Sama_0638 0.14 -0.7
794,268 + Sama_0638 0.15 +0.2
794,268 + Sama_0638 0.15 -0.1
794,268 + Sama_0638 0.15 -0.3
794,269 - Sama_0638 0.16 -1.1
794,269 - Sama_0638 0.16 -0.8
794,271 + Sama_0638 0.16 -0.2
794,271 + Sama_0638 0.16 +0.2
794,271 + Sama_0638 0.16 -0.0
794,271 + Sama_0638 0.16 +0.2
794,271 + Sama_0638 0.16 -0.5
794,271 + Sama_0638 0.16 -1.7
794,271 + Sama_0638 0.16 +0.3
794,271 + Sama_0638 0.16 -0.7
794,272 - Sama_0638 0.16 +1.3
794,272 - Sama_0638 0.16 -0.7
794,272 - Sama_0638 0.16 -0.3
794,272 - Sama_0638 0.16 -1.0
794,272 - Sama_0638 0.16 -0.4
794,272 - Sama_0638 0.16 -0.4
794,272 - Sama_0638 0.16 +0.0
794,272 - Sama_0638 0.16 +0.2
794,368 + Sama_0638 0.23 +0.9
794,369 - Sama_0638 0.23 +0.7
794,369 - Sama_0638 0.23 -0.5
794,369 - Sama_0638 0.23 -0.0
794,471 + Sama_0638 0.30 -0.4
794,521 + Sama_0638 0.34 -0.1
794,521 + Sama_0638 0.34 -0.6
794,522 - Sama_0638 0.34 +0.6
794,522 - Sama_0638 0.34 +0.5
794,522 - Sama_0638 0.34 -0.1
794,522 - Sama_0638 0.34 +0.3
794,561 + Sama_0638 0.37 -0.1
794,616 + Sama_0638 0.41 +0.2
794,617 - Sama_0638 0.41 -1.0
794,617 - Sama_0638 0.41 -1.5
794,646 + Sama_0638 0.43 +1.0
794,647 - Sama_0638 0.43 -0.6
794,647 - Sama_0638 0.43 -0.2
794,670 - Sama_0638 0.45 +0.1
794,716 - Sama_0638 0.48 -0.9
794,731 + Sama_0638 0.49 -0.3
794,731 + Sama_0638 0.49 +0.3
794,732 - Sama_0638 0.49 -1.9
794,774 + Sama_0638 0.52 +0.9
794,775 - Sama_0638 0.52 +0.6
794,811 - Sama_0638 0.55 -1.3
794,811 - Sama_0638 0.55 -0.2
794,811 - Sama_0638 0.55 -0.2
794,824 + Sama_0638 0.56 -0.1
794,827 + Sama_0638 0.56 +0.0
794,827 + Sama_0638 0.56 -3.1
794,828 - Sama_0638 0.56 -0.4
794,828 - Sama_0638 0.56 -0.4
794,833 + Sama_0638 0.56 -0.4
794,841 + Sama_0638 0.57 -1.1
794,842 - Sama_0638 0.57 -1.4
794,886 + Sama_0638 0.60 +0.7
794,967 + Sama_0638 0.66 -0.3
795,013 + Sama_0638 0.69 +0.7
795,014 - Sama_0638 0.69 -0.9
795,025 + Sama_0638 0.70 -0.1
795,025 + Sama_0638 0.70 +0.1
795,026 - Sama_0638 0.70 -1.9
795,026 - Sama_0638 0.70 -0.4
795,040 + Sama_0638 0.71 +0.2
795,048 + Sama_0638 0.72 +1.3
795,049 - Sama_0638 0.72 -0.3
795,049 - Sama_0638 0.72 -1.1
795,049 - Sama_0638 0.72 +0.0

Or see this region's nucleotide sequence