Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0558 and Sama_0559 are separated by 121 nucleotides Sama_0559 and Sama_0560 are separated by 457 nucleotides
Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433
_0558
Sama_0559: Sama_0559 - hypothetical protein (RefSeq), at 694,555 to 695,007
_0559
Sama_0560: Sama_0560 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 695,465 to 696,634
_0560
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 693.618 kb on - strand at 693.618 kb on - strand at 693.633 kb on + strand at 693.633 kb on + strand at 693.634 kb on - strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.637 kb on - strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.666 kb on - strand at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.752 kb on - strand, within Sama_0558 at 693.871 kb on + strand, within Sama_0558 at 693.945 kb on + strand, within Sama_0558 at 693.946 kb on - strand, within Sama_0558 at 693.989 kb on - strand, within Sama_0558 at 693.994 kb on + strand, within Sama_0558 at 693.995 kb on - strand, within Sama_0558 at 694.006 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.217 kb on + strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.233 kb on + strand, within Sama_0558 at 694.234 kb on - strand, within Sama_0558 at 694.252 kb on + strand, within Sama_0558 at 694.253 kb on - strand, within Sama_0558 at 694.368 kb on - strand at 694.403 kb on - strand at 694.403 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.556 kb on + strand at 694.556 kb on + strand at 694.557 kb on - strand at 694.568 kb on + strand at 694.602 kb on + strand, within Sama_0559 at 694.602 kb on + strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.716 kb on + strand, within Sama_0559 at 694.749 kb on - strand, within Sama_0559 at 694.796 kb on + strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.864 kb on + strand, within Sama_0559 at 694.865 kb on - strand, within Sama_0559 at 694.916 kb on - strand, within Sama_0559 at 694.963 kb on - strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.971 kb on - strand at 694.971 kb on - strand at 694.981 kb on - strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 695.055 kb on + strand at 695.056 kb on - strand at 695.056 kb on - strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.166 kb on + strand at 695.187 kb on + strand at 695.188 kb on - strand at 695.198 kb on - strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.278 kb on - strand at 695.281 kb on + strand at 695.282 kb on - strand at 695.320 kb on + strand at 695.358 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.438 kb on - strand at 695.438 kb on - strand at 695.440 kb on - strand at 695.466 kb on + strand at 695.466 kb on + strand at 695.471 kb on + strand at 695.472 kb on - strand at 695.472 kb on - strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.511 kb on + strand at 695.512 kb on - strand at 695.512 kb on - strand at 695.512 kb on - strand at 695.550 kb on + strand at 695.551 kb on - strand at 695.551 kb on - strand at 695.551 kb on - strand at 695.622 kb on + strand, within Sama_0560 at 695.622 kb on + strand, within Sama_0560 at 695.623 kb on - strand, within Sama_0560 at 695.623 kb on - strand, within Sama_0560 at 695.640 kb on + strand, within Sama_0560 at 695.640 kb on + strand, within Sama_0560 at 695.641 kb on - strand, within Sama_0560 at 695.641 kb on - strand, within Sama_0560 at 695.641 kb on - strand, within Sama_0560 at 695.676 kb on + strand, within Sama_0560 at 695.676 kb on + strand, within Sama_0560 at 695.676 kb on + strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.677 kb on - strand, within Sama_0560 at 695.721 kb on + strand, within Sama_0560 at 695.721 kb on + strand, within Sama_0560 at 695.721 kb on + strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.722 kb on - strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.725 kb on + strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.726 kb on - strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.763 kb on + strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.764 kb on - strand, within Sama_0560 at 695.835 kb on - strand, within Sama_0560 at 695.952 kb on + strand, within Sama_0560 at 695.952 kb on + strand, within Sama_0560 at 695.952 kb on + strand, within Sama_0560 at 695.981 kb on - strand, within Sama_0560
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 693,618 - +0.4 693,618 - -1.4 693,633 + +0.3 693,633 + -0.1 693,634 - +0.0 693,636 + -0.4 693,636 + -1.0 693,636 + -0.8 693,637 - -0.0 693,662 + -0.9 693,662 + -0.3 693,662 + +0.2 693,662 + +0.2 693,663 - +0.1 693,663 - -0.2 693,663 - +0.7 693,663 - +0.6 693,663 - -0.0 693,663 - -0.5 693,666 - +0.9 693,740 + Sama_0558 0.11 +0.3 693,740 + Sama_0558 0.11 +0.6 693,740 + Sama_0558 0.11 -0.8 693,740 + Sama_0558 0.11 +0.4 693,740 + Sama_0558 0.11 -0.3 693,741 - Sama_0558 0.11 -1.1 693,741 - Sama_0558 0.11 +0.2 693,741 - Sama_0558 0.11 +0.7 693,741 - Sama_0558 0.11 +0.4 693,741 - Sama_0558 0.11 +0.9 693,741 - Sama_0558 0.11 +1.6 693,741 - Sama_0558 0.11 -0.4 693,741 - Sama_0558 0.11 +0.2 693,752 - Sama_0558 0.13 +0.1 693,871 + Sama_0558 0.28 -0.2 693,945 + Sama_0558 0.38 -0.0 693,946 - Sama_0558 0.38 -0.1 693,989 - Sama_0558 0.43 -1.7 693,994 + Sama_0558 0.44 -0.6 693,995 - Sama_0558 0.44 -3.3 694,006 + Sama_0558 0.45 -0.3 694,012 + Sama_0558 0.46 -0.3 694,012 + Sama_0558 0.46 -0.1 694,012 + Sama_0558 0.46 -0.9 694,012 + Sama_0558 0.46 -0.1 694,012 + Sama_0558 0.46 +0.6 694,012 + Sama_0558 0.46 +0.1 694,012 + Sama_0558 0.46 -0.2 694,013 - Sama_0558 0.46 +0.3 694,013 - Sama_0558 0.46 -0.9 694,013 - Sama_0558 0.46 +0.4 694,013 - Sama_0558 0.46 -0.1 694,030 + Sama_0558 0.48 -0.6 694,030 + Sama_0558 0.48 -0.6 694,031 - Sama_0558 0.49 -0.4 694,031 - Sama_0558 0.49 -0.6 694,031 - Sama_0558 0.49 -0.6 694,031 - Sama_0558 0.49 -0.1 694,091 - Sama_0558 0.56 +0.4 694,091 - Sama_0558 0.56 +0.1 694,132 + Sama_0558 0.61 -0.1 694,132 + Sama_0558 0.61 -0.5 694,133 - Sama_0558 0.62 +0.3 694,133 - Sama_0558 0.62 -0.3 694,133 - Sama_0558 0.62 +0.1 694,217 + Sama_0558 0.72 +0.4 694,218 - Sama_0558 0.72 -1.0 694,218 - Sama_0558 0.72 -1.1 694,233 + Sama_0558 0.74 -0.1 694,234 - Sama_0558 0.74 -0.6 694,252 + Sama_0558 0.77 -0.0 694,253 - Sama_0558 0.77 -0.5 694,368 - -0.7 694,403 - -1.2 694,403 - +1.0 694,470 - -0.2 694,470 - -0.5 694,470 - +0.6 694,470 - -0.3 694,556 + +0.1 694,556 + +0.4 694,557 - -0.1 694,568 + -0.7 694,602 + Sama_0559 0.10 +0.6 694,602 + Sama_0559 0.10 -0.8 694,603 - Sama_0559 0.11 +0.4 694,603 - Sama_0559 0.11 +0.2 694,633 + Sama_0559 0.17 +0.6 694,633 + Sama_0559 0.17 -0.4 694,633 + Sama_0559 0.17 +0.5 694,633 + Sama_0559 0.17 +0.1 694,634 - Sama_0559 0.17 +1.1 694,634 - Sama_0559 0.17 -2.5 694,634 - Sama_0559 0.17 -0.3 694,634 - Sama_0559 0.17 +0.7 694,634 - Sama_0559 0.17 -0.7 694,637 + Sama_0559 0.18 +1.1 694,637 + Sama_0559 0.18 +0.4 694,637 + Sama_0559 0.18 -0.2 694,638 - Sama_0559 0.18 -0.4 694,638 - Sama_0559 0.18 +0.1 694,638 - Sama_0559 0.18 +0.5 694,638 - Sama_0559 0.18 +0.4 694,716 + Sama_0559 0.36 -0.7 694,749 - Sama_0559 0.43 +0.5 694,796 + Sama_0559 0.53 -1.5 694,797 - Sama_0559 0.53 +0.3 694,797 - Sama_0559 0.53 +0.2 694,797 - Sama_0559 0.53 +0.7 694,864 + Sama_0559 0.68 +0.3 694,865 - Sama_0559 0.68 +0.1 694,916 - Sama_0559 0.80 +0.4 694,963 - -0.1 694,970 + -0.7 694,970 + +0.5 694,970 + +0.2 694,970 + +0.2 694,971 - -0.2 694,971 - -0.0 694,981 - -0.0 694,982 + +0.2 694,982 + -1.0 694,982 + +0.2 694,982 + -0.5 694,982 + -0.0 694,982 + +0.1 694,983 - +0.9 694,983 - -0.8 694,983 - -0.1 694,983 - +0.1 694,983 - -1.2 694,983 - -0.4 694,983 - +0.9 695,055 + -0.0 695,056 - -0.2 695,056 - +0.7 695,061 + -0.9 695,061 + -0.4 695,061 + +0.4 695,061 + -0.2 695,061 + -0.4 695,061 + -1.0 695,061 + -0.6 695,061 + -0.3 695,061 + +1.3 695,061 + -0.6 695,062 - -0.6 695,062 - -0.7 695,062 - +0.5 695,062 - -0.4 695,062 - -0.1 695,062 - -0.4 695,062 - +0.3 695,062 - -0.1 695,062 - -0.5 695,166 + -0.1 695,187 + -1.0 695,188 - -0.2 695,198 - +0.7 695,277 + +0.8 695,277 + -0.5 695,277 + +0.0 695,278 - -0.3 695,281 + -0.5 695,282 - +0.1 695,320 + +0.3 695,358 + -0.2 695,434 + -0.1 695,434 + +0.4 695,434 + -0.4 695,438 - -0.3 695,438 - -0.5 695,440 - -1.1 695,466 + -0.2 695,466 + -0.5 695,471 + -0.7 695,472 - -1.0 695,472 - -1.4 695,511 + -0.9 695,511 + -0.8 695,511 + -1.2 695,511 + +0.4 695,511 + +1.1 695,512 - -0.8 695,512 - +0.2 695,512 - +0.8 695,550 + -0.4 695,551 - +0.1 695,551 - -0.1 695,551 - +0.1 695,622 + Sama_0560 0.13 -0.1 695,622 + Sama_0560 0.13 +1.3 695,623 - Sama_0560 0.14 -0.1 695,623 - Sama_0560 0.14 +0.3 695,640 + Sama_0560 0.15 -0.8 695,640 + Sama_0560 0.15 -1.2 695,641 - Sama_0560 0.15 +0.1 695,641 - Sama_0560 0.15 -0.7 695,641 - Sama_0560 0.15 -0.8 695,676 + Sama_0560 0.18 -2.0 695,676 + Sama_0560 0.18 -1.0 695,676 + Sama_0560 0.18 -1.7 695,677 - Sama_0560 0.18 -1.5 695,677 - Sama_0560 0.18 +0.2 695,677 - Sama_0560 0.18 -0.5 695,677 - Sama_0560 0.18 +0.3 695,721 + Sama_0560 0.22 -0.1 695,721 + Sama_0560 0.22 +0.3 695,721 + Sama_0560 0.22 -0.3 695,722 - Sama_0560 0.22 +0.1 695,722 - Sama_0560 0.22 -0.3 695,722 - Sama_0560 0.22 -0.5 695,722 - Sama_0560 0.22 +0.1 695,722 - Sama_0560 0.22 -0.5 695,722 - Sama_0560 0.22 -1.9 695,722 - Sama_0560 0.22 -0.8 695,722 - Sama_0560 0.22 +0.0 695,725 + Sama_0560 0.22 +0.6 695,725 + Sama_0560 0.22 +0.1 695,725 + Sama_0560 0.22 +0.6 695,725 + Sama_0560 0.22 -0.2 695,726 - Sama_0560 0.22 +0.5 695,726 - Sama_0560 0.22 +0.3 695,726 - Sama_0560 0.22 -2.3 695,726 - Sama_0560 0.22 -1.0 695,763 + Sama_0560 0.25 -0.9 695,763 + Sama_0560 0.25 -0.5 695,763 + Sama_0560 0.25 +0.7 695,763 + Sama_0560 0.25 -1.2 695,764 - Sama_0560 0.26 -0.1 695,764 - Sama_0560 0.26 -0.4 695,764 - Sama_0560 0.26 -0.1 695,764 - Sama_0560 0.26 -0.9 695,835 - Sama_0560 0.32 -0.2 695,952 + Sama_0560 0.42 -0.6 695,952 + Sama_0560 0.42 -0.5 695,952 + Sama_0560 0.42 +0.0 695,981 - Sama_0560 0.44 +1.0
Or see this region's nucleotide sequence