Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0284 and Sama_0285 are separated by 80 nucleotides Sama_0285 and Sama_0286 are separated by 256 nucleotides
Sama_0284: Sama_0284 - sodium/alanine symporter (RefSeq), at 331,946 to 333,379
_0284
Sama_0285: Sama_0285 - nucleotidase (RefSeq), at 333,460 to 334,149
_0285
Sama_0286: Sama_0286 - TonB-dependent receptor (RefSeq), at 334,406 to 337,336
_0286
Position (kb) 333
334
335 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.489 kb on + strand, within Sama_0284 at 332.489 kb on + strand, within Sama_0284 at 332.490 kb on - strand, within Sama_0284 at 332.500 kb on - strand, within Sama_0284 at 332.647 kb on + strand, within Sama_0284 at 332.648 kb on - strand, within Sama_0284 at 332.664 kb on - strand, within Sama_0284 at 332.664 kb on - strand, within Sama_0284 at 332.664 kb on - strand, within Sama_0284 at 332.681 kb on + strand, within Sama_0284 at 332.681 kb on + strand, within Sama_0284 at 332.682 kb on - strand, within Sama_0284 at 332.691 kb on + strand, within Sama_0284 at 332.691 kb on + strand, within Sama_0284 at 332.730 kb on + strand, within Sama_0284 at 332.829 kb on + strand, within Sama_0284 at 332.830 kb on - strand, within Sama_0284 at 332.830 kb on - strand, within Sama_0284 at 332.831 kb on - strand, within Sama_0284 at 332.848 kb on - strand, within Sama_0284 at 332.848 kb on - strand, within Sama_0284 at 332.848 kb on - strand, within Sama_0284 at 332.950 kb on + strand, within Sama_0284 at 332.950 kb on + strand, within Sama_0284 at 332.950 kb on + strand, within Sama_0284 at 332.951 kb on - strand, within Sama_0284 at 332.951 kb on - strand, within Sama_0284 at 332.951 kb on - strand, within Sama_0284 at 332.956 kb on + strand, within Sama_0284 at 332.957 kb on - strand, within Sama_0284 at 332.957 kb on - strand, within Sama_0284 at 332.957 kb on - strand, within Sama_0284 at 333.052 kb on - strand, within Sama_0284 at 333.052 kb on - strand, within Sama_0284 at 333.064 kb on + strand, within Sama_0284 at 333.104 kb on + strand, within Sama_0284 at 333.104 kb on + strand, within Sama_0284 at 333.104 kb on + strand, within Sama_0284 at 333.105 kb on - strand, within Sama_0284 at 333.105 kb on - strand, within Sama_0284 at 333.155 kb on + strand, within Sama_0284 at 333.155 kb on + strand, within Sama_0284 at 333.156 kb on - strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.161 kb on + strand, within Sama_0284 at 333.162 kb on - strand, within Sama_0284 at 333.162 kb on - strand, within Sama_0284 at 333.167 kb on + strand, within Sama_0284 at 333.167 kb on + strand, within Sama_0284 at 333.168 kb on - strand, within Sama_0284 at 333.184 kb on - strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.213 kb on + strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.214 kb on - strand, within Sama_0284 at 333.237 kb on - strand at 333.273 kb on + strand at 333.274 kb on - strand at 333.311 kb on + strand at 333.311 kb on + strand at 333.312 kb on - strand at 333.312 kb on - strand at 333.380 kb on + strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.381 kb on - strand at 333.384 kb on - strand at 333.384 kb on - strand at 333.384 kb on - strand at 333.419 kb on + strand at 333.420 kb on - strand at 333.420 kb on - strand at 333.442 kb on + strand at 333.442 kb on + strand at 333.446 kb on + strand at 333.446 kb on + strand at 333.446 kb on + strand at 333.447 kb on - strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.459 kb on + strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.497 kb on + strand at 333.497 kb on + strand at 333.497 kb on + strand at 333.498 kb on - strand at 333.498 kb on - strand at 333.498 kb on - strand at 333.601 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.060 kb on + strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.061 kb on - strand, within Sama_0285 at 334.062 kb on + strand, within Sama_0285 at 334.063 kb on - strand, within Sama_0285 at 334.113 kb on + strand at 334.113 kb on + strand at 334.114 kb on - strand at 334.114 kb on - strand at 334.114 kb on - strand at 334.114 kb on - strand at 334.139 kb on + strand at 334.207 kb on + strand at 334.256 kb on - strand at 334.276 kb on + strand at 334.282 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.311 kb on + strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.312 kb on - strand at 334.315 kb on - strand at 334.567 kb on + strand at 334.567 kb on + strand at 334.618 kb on + strand at 334.618 kb on + strand at 334.619 kb on - strand at 334.750 kb on + strand, within Sama_0286 at 334.786 kb on + strand, within Sama_0286 at 334.787 kb on - strand, within Sama_0286 at 334.787 kb on - strand, within Sama_0286 at 334.787 kb on - strand, within Sama_0286 at 334.871 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.904 kb on + strand, within Sama_0286 at 334.905 kb on - strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.996 kb on + strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 334.997 kb on - strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.024 kb on + strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.025 kb on - strand, within Sama_0286 at 335.048 kb on + strand, within Sama_0286 at 335.049 kb on - strand, within Sama_0286 at 335.132 kb on + strand, within Sama_0286 at 335.132 kb on + strand, within Sama_0286 at 335.132 kb on + strand, within Sama_0286
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 332,489 + Sama_0284 0.38 -0.0 332,489 + Sama_0284 0.38 -0.1 332,490 - Sama_0284 0.38 +0.0 332,500 - Sama_0284 0.39 +0.2 332,647 + Sama_0284 0.49 +0.3 332,648 - Sama_0284 0.49 -1.2 332,664 - Sama_0284 0.50 +0.1 332,664 - Sama_0284 0.50 -0.5 332,664 - Sama_0284 0.50 -0.2 332,681 + Sama_0284 0.51 +0.2 332,681 + Sama_0284 0.51 +2.2 332,682 - Sama_0284 0.51 -0.2 332,691 + Sama_0284 0.52 -0.6 332,691 + Sama_0284 0.52 +0.1 332,730 + Sama_0284 0.55 -0.3 332,829 + Sama_0284 0.62 +0.9 332,830 - Sama_0284 0.62 -0.4 332,830 - Sama_0284 0.62 -0.0 332,831 - Sama_0284 0.62 -0.7 332,848 - Sama_0284 0.63 -0.3 332,848 - Sama_0284 0.63 -0.6 332,848 - Sama_0284 0.63 +0.2 332,950 + Sama_0284 0.70 -0.8 332,950 + Sama_0284 0.70 -0.8 332,950 + Sama_0284 0.70 +0.0 332,951 - Sama_0284 0.70 +0.1 332,951 - Sama_0284 0.70 -0.6 332,951 - Sama_0284 0.70 -1.0 332,956 + Sama_0284 0.70 +0.2 332,957 - Sama_0284 0.71 -1.1 332,957 - Sama_0284 0.71 +1.0 332,957 - Sama_0284 0.71 -0.2 333,052 - Sama_0284 0.77 +1.6 333,052 - Sama_0284 0.77 -0.1 333,064 + Sama_0284 0.78 -0.1 333,104 + Sama_0284 0.81 +0.4 333,104 + Sama_0284 0.81 -0.3 333,104 + Sama_0284 0.81 -1.4 333,105 - Sama_0284 0.81 -1.1 333,105 - Sama_0284 0.81 +0.9 333,155 + Sama_0284 0.84 -1.3 333,155 + Sama_0284 0.84 -1.2 333,156 - Sama_0284 0.84 -0.2 333,161 + Sama_0284 0.85 +0.5 333,161 + Sama_0284 0.85 -0.5 333,161 + Sama_0284 0.85 -0.4 333,161 + Sama_0284 0.85 +0.6 333,161 + Sama_0284 0.85 -0.9 333,162 - Sama_0284 0.85 -0.7 333,162 - Sama_0284 0.85 +0.6 333,167 + Sama_0284 0.85 +0.0 333,167 + Sama_0284 0.85 -0.5 333,168 - Sama_0284 0.85 -0.4 333,184 - Sama_0284 0.86 +0.2 333,213 + Sama_0284 0.88 +1.1 333,213 + Sama_0284 0.88 +0.1 333,213 + Sama_0284 0.88 +0.1 333,213 + Sama_0284 0.88 -0.2 333,213 + Sama_0284 0.88 +0.3 333,213 + Sama_0284 0.88 +0.5 333,213 + Sama_0284 0.88 +0.8 333,213 + Sama_0284 0.88 +0.0 333,214 - Sama_0284 0.88 -1.1 333,214 - Sama_0284 0.88 +1.2 333,214 - Sama_0284 0.88 +0.4 333,214 - Sama_0284 0.88 +0.6 333,214 - Sama_0284 0.88 -0.4 333,214 - Sama_0284 0.88 +0.1 333,237 - +0.1 333,273 + -0.3 333,274 - -2.2 333,311 + +0.1 333,311 + +0.6 333,312 - +0.0 333,312 - -0.5 333,380 + -0.2 333,381 - +0.0 333,381 - +0.5 333,381 - -0.4 333,381 - +0.6 333,381 - -1.0 333,384 - +0.4 333,384 - -1.1 333,384 - +0.3 333,419 + +0.2 333,420 - -1.5 333,420 - -0.5 333,442 + -1.2 333,442 + -1.8 333,446 + +0.4 333,446 + +0.3 333,446 + +0.4 333,447 - +0.1 333,459 + -0.6 333,459 + -0.7 333,459 + -1.3 333,459 + -0.1 333,459 + +0.2 333,460 - -0.9 333,460 - -0.7 333,460 - -0.1 333,460 - -0.9 333,460 - -0.3 333,460 - -1.8 333,497 + +0.5 333,497 + +0.1 333,497 + +0.8 333,498 - +0.2 333,498 - +0.1 333,498 - -1.5 333,601 + Sama_0285 0.20 +0.3 334,060 + Sama_0285 0.87 -0.6 334,060 + Sama_0285 0.87 +0.3 334,060 + Sama_0285 0.87 +0.7 334,060 + Sama_0285 0.87 +1.4 334,060 + Sama_0285 0.87 +0.4 334,060 + Sama_0285 0.87 +0.7 334,061 - Sama_0285 0.87 -1.6 334,061 - Sama_0285 0.87 -0.1 334,061 - Sama_0285 0.87 +0.5 334,061 - Sama_0285 0.87 -0.6 334,061 - Sama_0285 0.87 -0.4 334,062 + Sama_0285 0.87 +1.0 334,063 - Sama_0285 0.87 -0.0 334,113 + -0.2 334,113 + +0.4 334,114 - +0.5 334,114 - -0.5 334,114 - -0.3 334,114 - -0.4 334,139 + -2.0 334,207 + -0.4 334,256 - +0.5 334,276 + +0.1 334,282 + -0.4 334,311 + -0.8 334,311 + -0.1 334,311 + +0.3 334,311 + +0.4 334,311 + +0.2 334,311 + +0.1 334,311 + -0.4 334,311 + +0.8 334,312 - +0.3 334,312 - +0.2 334,312 - +0.3 334,312 - +0.2 334,312 - +0.3 334,312 - -0.4 334,312 - -0.8 334,312 - -0.7 334,312 - -0.3 334,315 - +0.2 334,567 + +0.4 334,567 + +1.0 334,618 + -0.9 334,618 + -0.2 334,619 - -0.2 334,750 + Sama_0286 0.12 +1.8 334,786 + Sama_0286 0.13 -2.2 334,787 - Sama_0286 0.13 +0.9 334,787 - Sama_0286 0.13 -0.4 334,787 - Sama_0286 0.13 -1.7 334,871 + Sama_0286 0.16 -1.3 334,904 + Sama_0286 0.17 +0.8 334,904 + Sama_0286 0.17 -1.5 334,904 + Sama_0286 0.17 +0.1 334,904 + Sama_0286 0.17 -2.3 334,904 + Sama_0286 0.17 -0.6 334,904 + Sama_0286 0.17 -0.5 334,904 + Sama_0286 0.17 +1.1 334,905 - Sama_0286 0.17 +0.2 334,996 + Sama_0286 0.20 -1.0 334,996 + Sama_0286 0.20 +0.1 334,996 + Sama_0286 0.20 -0.2 334,996 + Sama_0286 0.20 -0.5 334,996 + Sama_0286 0.20 -0.2 334,996 + Sama_0286 0.20 +0.4 334,996 + Sama_0286 0.20 -0.3 334,996 + Sama_0286 0.20 -0.4 334,996 + Sama_0286 0.20 +1.2 334,996 + Sama_0286 0.20 -0.2 334,996 + Sama_0286 0.20 +0.1 334,996 + Sama_0286 0.20 -0.1 334,996 + Sama_0286 0.20 -0.0 334,996 + Sama_0286 0.20 +2.1 334,996 + Sama_0286 0.20 -0.9 334,996 + Sama_0286 0.20 -0.8 334,996 + Sama_0286 0.20 -0.1 334,996 + Sama_0286 0.20 -1.2 334,996 + Sama_0286 0.20 -0.2 334,996 + Sama_0286 0.20 -0.6 334,997 - Sama_0286 0.20 +0.1 334,997 - Sama_0286 0.20 +0.3 334,997 - Sama_0286 0.20 -0.9 334,997 - Sama_0286 0.20 -0.3 334,997 - Sama_0286 0.20 +0.3 334,997 - Sama_0286 0.20 +0.8 334,997 - Sama_0286 0.20 -1.3 334,997 - Sama_0286 0.20 +0.4 335,024 + Sama_0286 0.21 -0.4 335,024 + Sama_0286 0.21 +0.1 335,024 + Sama_0286 0.21 -0.3 335,024 + Sama_0286 0.21 -0.9 335,024 + Sama_0286 0.21 +0.1 335,024 + Sama_0286 0.21 -0.0 335,025 - Sama_0286 0.21 -1.6 335,025 - Sama_0286 0.21 -0.2 335,025 - Sama_0286 0.21 -0.2 335,025 - Sama_0286 0.21 -0.2 335,025 - Sama_0286 0.21 +0.8 335,025 - Sama_0286 0.21 -0.7 335,025 - Sama_0286 0.21 -0.5 335,048 + Sama_0286 0.22 +0.3 335,049 - Sama_0286 0.22 +0.4 335,132 + Sama_0286 0.25 +0.1 335,132 + Sama_0286 0.25 -0.6 335,132 + Sama_0286 0.25 +0.6
Or see this region's nucleotide sequence