Strain Fitness in Shewanella amazonensis SB2B around Sama_0110

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
122,578	+		Sama_0109	0.37	+0.9
122,633	+		Sama_0109	0.41	+0.2
122,633	+		Sama_0109	0.41	+1.0
122,633	+		Sama_0109	0.41	-1.5
122,633	+		Sama_0109	0.41	+0.1
122,634	-		Sama_0109	0.41	-1.2
122,634	-		Sama_0109	0.41	+1.2
122,634	-		Sama_0109	0.41	-1.6
122,634	-		Sama_0109	0.41	+0.6
122,634	-		Sama_0109	0.41	-0.1
122,634	-		Sama_0109	0.41	-0.3
122,634	-		Sama_0109	0.41	-0.6
122,634	-		Sama_0109	0.41	-0.1
122,635	+		Sama_0109	0.41	-0.5
122,635	+		Sama_0109	0.41	-0.1
122,635	+		Sama_0109	0.41	-0.4
122,635	+		Sama_0109	0.41	-0.1
122,635	+		Sama_0109	0.41	+0.8
122,636	-		Sama_0109	0.41	-1.0
122,636	-		Sama_0109	0.41	+0.1
122,636	-		Sama_0109	0.41	-0.2
122,692	-		Sama_0109	0.46	-0.6
122,715	+		Sama_0109	0.48	-0.1
122,715	+		Sama_0109	0.48	-1.0
122,715	+		Sama_0109	0.48	-0.3
122,715	+		Sama_0109	0.48	+0.5
122,715	+		Sama_0109	0.48	+0.2
122,716	-		Sama_0109	0.48	-1.6
122,716	-		Sama_0109	0.48	+0.5
122,716	-		Sama_0109	0.48	-0.4
122,716	-		Sama_0109	0.48	+0.3
122,716	-		Sama_0109	0.48	-1.1
122,716	-		Sama_0109	0.48	-1.3
122,718	+		Sama_0109	0.48	-0.3
122,718	+		Sama_0109	0.48	-0.2
122,718	+		Sama_0109	0.48	-1.0
122,719	-		Sama_0109	0.48	-0.8
122,719	-		Sama_0109	0.48	-0.9
122,719	-		Sama_0109	0.48	+0.1
122,719	-		Sama_0109	0.48	-1.7
122,719	-		Sama_0109	0.48	+0.0
122,719	-		Sama_0109	0.48	-1.6
122,785	+		Sama_0109	0.54	-0.6
122,785	+		Sama_0109	0.54	+1.0
122,785	+		Sama_0109	0.54	-0.4
122,786	-		Sama_0109	0.54	+1.5
122,786	-		Sama_0109	0.54	-0.5
122,786	-		Sama_0109	0.54	-0.5
122,798	+		Sama_0109	0.55	-1.2
122,798	+		Sama_0109	0.55	-0.1
122,798	+		Sama_0109	0.55	+0.3
122,798	+		Sama_0109	0.55	-1.5
122,799	-		Sama_0109	0.55	+0.2
122,799	-		Sama_0109	0.55	-0.0
122,799	-		Sama_0109	0.55	+1.5
122,799	-		Sama_0109	0.55	+0.9
122,808	+		Sama_0109	0.56	+0.5
122,808	+		Sama_0109	0.56	-0.2
122,809	-		Sama_0109	0.56	-0.5
122,809	-		Sama_0109	0.56	+3.1
122,809	-		Sama_0109	0.56	-0.2
122,816	-		Sama_0109	0.56	-0.6
122,816	-		Sama_0109	0.56	-0.3
122,816	-		Sama_0109	0.56	-0.6
122,816	-		Sama_0109	0.56	-0.1
122,865	+		Sama_0109	0.60	-0.9
122,865	+		Sama_0109	0.60	-1.2
122,865	+		Sama_0109	0.60	+0.0
122,865	+		Sama_0109	0.60	-0.3
122,865	+		Sama_0109	0.60	-0.9
122,865	+		Sama_0109	0.60	+0.1
122,865	+		Sama_0109	0.60	-0.1
122,866	-		Sama_0109	0.60	-0.3
122,866	-		Sama_0109	0.60	-2.0
122,866	-		Sama_0109	0.60	-0.7
122,885	-		Sama_0109	0.62	+0.3
122,902	+		Sama_0109	0.63	+0.1
122,920	+		Sama_0109	0.65	+0.1
122,920	+		Sama_0109	0.65	+0.3
122,920	+		Sama_0109	0.65	-0.2
122,968	+		Sama_0109	0.69	-1.1
122,968	+		Sama_0109	0.69	-0.3
122,968	+		Sama_0109	0.69	-0.3
122,969	-		Sama_0109	0.69	-0.5
123,041	-		Sama_0109	0.75	-0.6
123,041	-		Sama_0109	0.75	-1.3
123,041	-		Sama_0109	0.75	-0.3
123,079	+		Sama_0109	0.78	+0.1
123,079	+		Sama_0109	0.78	+0.1
123,079	+		Sama_0109	0.78	-1.3
123,080	-		Sama_0109	0.78	-1.6
123,080	-		Sama_0109	0.78	-0.0
123,080	-		Sama_0109	0.78	-0.5
123,080	-		Sama_0109	0.78	-0.9
123,139	+		Sama_0109	0.83	-0.6
123,139	+		Sama_0109	0.83	-0.7
123,139	+		Sama_0109	0.83	-0.6
123,139	+		Sama_0109	0.83	-0.9
123,139	+		Sama_0109	0.83	-0.1
123,139	+		Sama_0109	0.83	+0.4
123,140	-		Sama_0109	0.83	+0.1
123,140	-		Sama_0109	0.83	-1.2
123,140	-		Sama_0109	0.83	+0.5
123,140	-		Sama_0109	0.83	-0.8
123,140	-		Sama_0109	0.83	-0.0
123,140	-		Sama_0109	0.83	+0.3
123,140	-		Sama_0109	0.83	-0.6
123,140	-		Sama_0109	0.83	-1.9
123,140	-		Sama_0109	0.83	+0.3
123,140	-		Sama_0109	0.83	-0.7
123,140	-		Sama_0109	0.83	-0.4
123,140	-		Sama_0109	0.83	-0.7
123,140	-		Sama_0109	0.83	-0.2
123,140	-		Sama_0109	0.83	+0.2
123,140	-		Sama_0109	0.83	+0.9
123,142	-		Sama_0109	0.83	-0.3
123,142	-		Sama_0109	0.83	-0.1
123,161	+		Sama_0109	0.85	-0.0
123,161	+		Sama_0109	0.85	-0.5
123,162	-		Sama_0109	0.85	-0.2
123,275	-				+0.3
123,283	+				+0.3
123,283	+				-0.3
123,284	-				-0.3
123,284	-				-0.1
123,307	+				-0.5
123,308	-				-0.0
123,327	+				+0.6
123,327	+				+0.1
123,327	+				-0.4
123,327	+				+0.2
123,328	-				+0.0
123,328	-				-0.5
123,328	-				+0.2
123,379	+				-0.9
123,380	-				-1.5
123,380	-				+0.1
123,380	-				-0.5
123,382	+				-0.2
123,484	+				-0.1
123,484	+				-0.9
123,485	-				+0.6
123,485	-				-0.3
123,488	+				-0.2
123,488	+				+0.2
123,488	+				+0.1
123,488	+				+0.4
123,489	-				+0.4
123,563	+				+0.1
123,563	+				+0.7
123,563	+				-0.8
123,563	+				+1.0
123,563	+				-0.3
123,563	+				-1.3
123,564	-				+0.3
123,564	-				+0.3
123,564	-				+0.2
123,564	-				+0.6
123,607	+		Sama_0110	0.10	+0.2
123,630	+		Sama_0110	0.14	+1.0
123,630	+		Sama_0110	0.14	+1.1
123,630	+		Sama_0110	0.14	+0.9
123,630	+		Sama_0110	0.14	-1.1
123,630	+		Sama_0110	0.14	+0.9
123,630	+		Sama_0110	0.14	+0.5
123,630	+		Sama_0110	0.14	-0.1
123,630	+		Sama_0110	0.14	-0.2
123,630	+		Sama_0110	0.14	+1.3
123,630	+		Sama_0110	0.14	-0.4
123,630	+		Sama_0110	0.14	+1.1
123,630	+		Sama_0110	0.14	+0.6
123,630	+		Sama_0110	0.14	-0.1
123,630	+		Sama_0110	0.14	-0.3
123,630	+		Sama_0110	0.14	-0.1
123,632	+		Sama_0110	0.15	+1.0
123,632	+		Sama_0110	0.15	-0.3
123,632	+		Sama_0110	0.15	+2.5
123,632	+		Sama_0110	0.15	-0.5
123,632	+		Sama_0110	0.15	+0.6
123,632	+		Sama_0110	0.15	+0.1
123,632	+		Sama_0110	0.15	-0.4
124,093	+				+0.8
124,093	+				+0.4
124,094	-				-0.4
124,110	-				+0.4
124,124	+				-0.1
124,124	+				-0.4
124,124	+				+0.1
124,124	+				-1.4
124,124	+				+0.1
124,124	+				-0.6
124,125	-				+0.8
124,136	+				-1.1
124,143	+				-0.4
124,143	+				-0.7
124,143	+				-1.0
124,143	+				-0.1
124,143	+				-0.1
124,143	+				-1.5
124,143	+				-0.8
124,153	+				-0.1
124,153	+				-0.6