Strain Fitness in Shewanella amazonensis SB2B around Sama_0099

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
111,311	+		Sama_0098	0.40	+0.2
111,311	+		Sama_0098	0.40	-1.1
111,311	+		Sama_0098	0.40	-1.5
111,311	+		Sama_0098	0.40	+0.2
111,312	-		Sama_0098	0.40	-0.4
111,312	-		Sama_0098	0.40	+0.4
111,312	-		Sama_0098	0.40	+1.1
111,349	+		Sama_0098	0.43	+0.1
111,349	+		Sama_0098	0.43	-0.2
111,350	-		Sama_0098	0.43	+0.3
111,359	+		Sama_0098	0.44	+0.7
111,359	+		Sama_0098	0.44	-0.4
111,359	+		Sama_0098	0.44	-0.4
111,360	-		Sama_0098	0.44	+0.2
111,360	-		Sama_0098	0.44	-0.1
111,360	-		Sama_0098	0.44	-0.4
111,360	-		Sama_0098	0.44	-0.9
111,380	+		Sama_0098	0.45	-0.1
111,405	+		Sama_0098	0.47	-0.9
111,406	-		Sama_0098	0.48	-0.3
111,406	-		Sama_0098	0.48	+0.1
111,425	-		Sama_0098	0.49	+0.5
111,453	+		Sama_0098	0.52	-0.1
111,453	+		Sama_0098	0.52	+0.2
111,454	-		Sama_0098	0.52	-0.2
111,454	-		Sama_0098	0.52	-0.1
111,454	-		Sama_0098	0.52	+1.0
111,454	-		Sama_0098	0.52	+0.4
111,465	+		Sama_0098	0.53	+1.0
111,465	+		Sama_0098	0.53	-0.1
111,465	+		Sama_0098	0.53	+0.7
111,466	-		Sama_0098	0.53	-0.6
111,466	-		Sama_0098	0.53	+0.5
111,466	-		Sama_0098	0.53	+0.7
111,466	-		Sama_0098	0.53	+0.1
111,466	-		Sama_0098	0.53	-0.6
111,506	+		Sama_0098	0.56	-1.1
111,506	+		Sama_0098	0.56	+1.0
111,506	+		Sama_0098	0.56	-0.4
111,507	-		Sama_0098	0.56	+0.9
111,536	+		Sama_0098	0.58	+0.2
111,536	+		Sama_0098	0.58	+1.1
111,536	+		Sama_0098	0.58	+0.2
111,537	-		Sama_0098	0.59	-0.7
111,537	-		Sama_0098	0.59	-1.2
111,537	-		Sama_0098	0.59	+0.1
111,537	-		Sama_0098	0.59	+0.1
111,560	+		Sama_0098	0.60	+0.2
111,560	+		Sama_0098	0.60	-1.7
111,560	+		Sama_0098	0.60	+0.2
111,561	-		Sama_0098	0.61	+0.4
111,561	-		Sama_0098	0.61	-0.1
111,593	+		Sama_0098	0.63	+0.9
111,594	-		Sama_0098	0.63	+0.5
111,594	-		Sama_0098	0.63	-0.2
111,617	+		Sama_0098	0.65	-0.3
111,617	+		Sama_0098	0.65	+0.8
111,618	-		Sama_0098	0.65	+0.4
111,618	-		Sama_0098	0.65	+1.1
111,618	-		Sama_0098	0.65	-0.0
111,618	-		Sama_0098	0.65	+1.1
111,618	-		Sama_0098	0.65	-0.2
111,618	-		Sama_0098	0.65	-0.9
111,709	+		Sama_0098	0.73	-0.0
111,709	+		Sama_0098	0.73	-0.1
111,719	+		Sama_0098	0.74	+0.0
111,720	-		Sama_0098	0.74	+0.7
111,720	-		Sama_0098	0.74	+0.7
111,720	-		Sama_0098	0.74	-0.2
111,720	-		Sama_0098	0.74	+0.0
111,720	-		Sama_0098	0.74	-0.5
111,720	-		Sama_0098	0.74	+0.4
111,788	+		Sama_0098	0.80	+0.1
111,788	+		Sama_0098	0.80	+0.9
111,789	-		Sama_0098	0.80	-0.1
111,807	-		Sama_0098	0.81	+0.5
111,807	-		Sama_0098	0.81	+0.1
111,877	+		Sama_0098	0.87	-0.9
111,877	+		Sama_0098	0.87	+0.6
111,877	+		Sama_0098	0.87	-1.0
111,877	+		Sama_0098	0.87	-0.1
111,878	-		Sama_0098	0.87	+0.5
111,878	-		Sama_0098	0.87	-1.3
111,878	-		Sama_0098	0.87	-0.8
111,878	-		Sama_0098	0.87	-0.3
111,897	-		Sama_0098	0.89	+0.1
111,897	-		Sama_0098	0.89	-0.0
111,897	-		Sama_0098	0.89	+0.1
111,920	+				+0.6
111,920	+				+0.8
111,920	+				-1.0
111,920	+				+1.1
111,920	+				+0.1
111,920	+				-0.5
111,921	-				-0.0
111,981	-				+2.1
111,981	-				-0.8
112,012	+				+0.6
112,012	+				+0.5
112,012	+				-0.6
112,012	+				+0.4
112,013	-				+0.2
112,043	+				-0.4
112,043	+				+0.0
112,043	+				+0.6
112,044	-				-0.9
112,047	+				+1.2
112,047	+				+0.5
112,048	-				+0.4
112,048	-				+0.5
112,053	+				-1.1
112,054	-				+0.8
112,054	-				-0.3
112,054	-				-0.5
112,083	+				+0.3
112,083	+				-0.4
112,083	+				+0.1
112,083	+				-0.5
112,084	-				-0.4
112,084	-				+0.3
112,096	-				+0.1
112,096	-				+0.4
112,111	+				-0.9
112,112	-				-1.0
112,112	-				-0.0
112,112	-				+0.2
112,136	+				+0.1
112,147	-				-1.4
112,222	+				+0.4
112,222	+				-0.5
112,222	+				-0.1
112,223	-				-0.6
112,288	+				-0.3
112,288	+				-0.9
112,289	-				-0.4
112,289	-				-0.2
112,357	+		Sama_0099	0.11	+1.1
112,357	+		Sama_0099	0.11	+0.1
112,358	-		Sama_0099	0.11	-1.7
112,358	-		Sama_0099	0.11	+0.5
112,395	+		Sama_0099	0.17	-1.0
112,396	+		Sama_0099	0.17	+1.0
112,397	-		Sama_0099	0.17	+0.6
112,444	+		Sama_0099	0.24	+1.0
112,444	+		Sama_0099	0.24	+0.6
112,444	+		Sama_0099	0.24	-2.0
112,445	-		Sama_0099	0.24	-1.9
112,464	-		Sama_0099	0.27	+0.2
112,516	-		Sama_0099	0.36	-0.7
112,516	-		Sama_0099	0.36	+0.4
112,520	+		Sama_0099	0.36	+1.5
112,520	+		Sama_0099	0.36	+1.5
112,521	-		Sama_0099	0.36	-0.1
112,521	-		Sama_0099	0.36	+0.0
112,578	+		Sama_0099	0.45	-0.3
112,578	+		Sama_0099	0.45	+1.5
112,579	-		Sama_0099	0.45	+0.4
112,579	-		Sama_0099	0.45	-1.9
112,589	-		Sama_0099	0.47	+0.4
112,639	+		Sama_0099	0.55	+0.6
112,639	+		Sama_0099	0.55	+2.1
112,639	+		Sama_0099	0.55	+2.1
112,640	-		Sama_0099	0.55	+0.1
112,640	-		Sama_0099	0.55	+0.3
112,640	-		Sama_0099	0.55	-0.9
112,640	-		Sama_0099	0.55	+0.1
112,640	-		Sama_0099	0.55	-0.2
112,640	-		Sama_0099	0.55	+0.4
112,643	+		Sama_0099	0.56	-0.1
112,643	+		Sama_0099	0.56	+0.2
112,643	+		Sama_0099	0.56	+1.5
112,643	+		Sama_0099	0.56	+0.6
112,643	+		Sama_0099	0.56	+0.2
112,643	+		Sama_0099	0.56	-0.7
112,643	+		Sama_0099	0.56	-0.5
112,643	+		Sama_0099	0.56	+1.1
112,644	-		Sama_0099	0.56	+1.1
112,644	-		Sama_0099	0.56	+0.5
112,644	-		Sama_0099	0.56	-1.5
112,644	-		Sama_0099	0.56	+1.0
112,644	-		Sama_0099	0.56	-0.9
112,644	-		Sama_0099	0.56	+0.1
112,666	+		Sama_0099	0.59	+0.1
112,666	+		Sama_0099	0.59	+0.5
112,666	+		Sama_0099	0.59	+3.1
112,666	+		Sama_0099	0.59	+0.2
112,666	+		Sama_0099	0.59	-0.0
112,666	+		Sama_0099	0.59	+1.2
112,666	+		Sama_0099	0.59	-0.3
112,666	+		Sama_0099	0.59	-1.1
112,667	-		Sama_0099	0.59	+0.3
112,667	-		Sama_0099	0.59	-0.1
112,667	-		Sama_0099	0.59	+0.8
112,667	-		Sama_0099	0.59	-0.1
112,667	-		Sama_0099	0.59	+1.7
112,667	-		Sama_0099	0.59	-0.5
112,667	-		Sama_0099	0.59	+0.3
112,667	-		Sama_0099	0.59	+0.5
112,684	+		Sama_0099	0.62	-0.6
112,684	+		Sama_0099	0.62	-0.5
112,684	+		Sama_0099	0.62	+0.9
112,684	+		Sama_0099	0.62	+0.1
112,685	-		Sama_0099	0.62	-0.2
112,685	-		Sama_0099	0.62	+1.5
112,685	-		Sama_0099	0.62	+1.0
112,724	-		Sama_0099	0.68	-1.7
112,730	+		Sama_0099	0.69	+0.9
112,730	+		Sama_0099	0.69	+1.0
112,730	+		Sama_0099	0.69	+0.9
112,730	+		Sama_0099	0.69	+1.5
112,731	-		Sama_0099	0.69	-0.1
112,731	-		Sama_0099	0.69	-0.3
112,731	-		Sama_0099	0.69	+0.7
112,731	-		Sama_0099	0.69	-0.7
112,778	+		Sama_0099	0.77	+1.2
112,779	-		Sama_0099	0.77	+0.2
112,804	+		Sama_0099	0.81	+0.4
112,804	+		Sama_0099	0.81	+1.0
112,804	+		Sama_0099	0.81	-0.7
112,804	+		Sama_0099	0.81	-0.3
112,804	+		Sama_0099	0.81	-0.0
112,805	-		Sama_0099	0.81	-0.0
112,805	-		Sama_0099	0.81	-0.6
112,805	-		Sama_0099	0.81	+0.5
112,805	-		Sama_0099	0.81	+1.2
112,807	+		Sama_0099	0.81	+0.0
112,807	+		Sama_0099	0.81	+1.1
112,807	+		Sama_0099	0.81	+0.1
112,808	-		Sama_0099	0.81	+0.0
112,808	-		Sama_0099	0.81	-0.5
112,826	+		Sama_0099	0.84	+0.1
112,844	+		Sama_0099	0.87	+0.4
112,844	+		Sama_0099	0.87	-1.9
112,845	-		Sama_0099	0.87	-0.6
112,856	+		Sama_0099	0.89	+0.2
112,856	+		Sama_0099	0.89	+1.3
112,856	+		Sama_0099	0.89	-0.9
112,856	+		Sama_0099	0.89	-1.1
112,856	+		Sama_0099	0.89	+0.5
112,857	-		Sama_0099	0.89	-1.5
112,880	+				-0.4
112,930	-				-0.0
112,930	-				+0.3
112,930	-				-1.3
112,940	+				-1.1
112,940	+				+0.3
112,940	+				+1.5
112,940	+				+0.5
112,940	+				+1.4
112,940	+				+0.3
112,940	+				+0.5
112,940	+				+0.6
112,940	+				+0.1
112,940	+				+0.9
112,941	-				+0.7
112,964	+				-0.7
112,979	+				-0.2
112,979	+				-0.1
112,979	+				+0.2
112,979	+				-0.5
112,997	+				+0.3
112,997	+				+0.8
112,997	+				+0.3
112,997	+				+1.1
112,998	-				+0.6
112,998	-				-0.4
112,998	-				-0.2
113,002	+				-0.1
113,002	+				-0.2
113,002	+				+0.8