Strain Fitness in Shewanella amazonensis SB2B around Sama_0093

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
103,812	+				-0.8
103,812	+				-0.8
103,813	-				+0.2
103,876	+				+1.3
103,876	+				+1.7
103,876	-				+0.6
103,876	+				-0.1
103,876	+				-1.0
103,876	+				-1.0
103,876	+				+0.5
103,877	-				-0.2
103,877	-				-1.0
103,877	-				-2.0
103,877	-				+0.8
103,919	+				+0.2
103,920	-				-2.0
103,920	-				-0.6
103,972	+				+0.7
103,981	-				-0.3
103,994	+				+0.4
104,030	-				-0.6
104,030	-				+0.7
104,091	-				+1.2
104,126	-				+1.5
104,128	+				-0.5
104,128	+				+0.8
104,128	+				-0.3
104,129	-				+0.8
104,129	-				+0.3
104,130	-				-0.4
104,220	+				-1.1
104,221	-				-0.7
104,221	-				+0.2
104,221	-				-0.2
104,232	+				-0.5
104,232	+				+0.5
104,233	-				-0.5
104,244	-				-0.1
104,264	+				-0.4
104,264	+				-0.3
104,265	-				-0.3
104,275	-				+1.0
104,308	+				-0.2
104,309	-				-0.4
104,313	+				-1.7
104,319	+				-1.1
104,319	+				+0.6
104,320	-				-0.7
104,369	+				+0.5
104,369	+				-0.5
104,369	+				+0.5
104,413	+				+0.4
104,413	+				-0.4
104,414	-				+0.2
104,438	+				+0.3
104,438	+				-0.1
104,438	+				-0.2
104,438	+				-0.2
104,439	-				-0.1
104,446	-				-0.2
104,446	-				-0.3
104,468	+				+0.1
104,491	+				+0.9
104,505	-				+1.1
104,513	+				+0.2
104,523	+				+0.3
104,524	-				+0.3
104,524	-				-0.0
104,524	-				-1.3
104,534	+				-0.3
104,535	-				+0.7
104,535	-				+0.0
104,535	-				-1.5
104,557	+				-1.0
104,558	-				-0.2
104,579	+				+0.7
104,581	+				-0.2
104,581	+				-0.0
104,581	+				+0.1
104,581	+				-0.3
104,581	+				-1.2
104,581	+				+1.2
104,581	+				+0.6
104,581	+				+0.1
104,581	+				+0.1
104,582	-				-0.6
104,582	-				-0.5
104,582	-				-0.2
104,582	-				-1.1
104,582	-				-0.7
104,582	-				+0.7
104,582	-				+0.4
104,582	-				+1.1
104,582	-				+0.8
104,591	-				-0.9
104,621	+				-0.9
104,621	+				+0.4
104,622	-				-0.8
104,666	-				+0.9
104,671	+				-0.7
104,671	+				+0.4
104,671	+				+0.7
104,671	+				-0.2
104,671	+				-0.2
104,671	+				-0.5
104,671	+				-0.1
104,671	+				-1.7
104,671	+				-0.4
104,671	+				+0.5
104,671	+				+0.2
104,671	+				+0.6
104,671	+				-1.4
104,671	+				-0.4
104,671	+				-0.1
104,672	-				-0.0
104,672	-				+0.8
104,672	-				+0.5
104,672	-				+0.5
104,672	-				-0.1
104,672	-				-1.3
104,672	-				-1.3
104,672	-				+0.7
104,672	-				-0.3
104,672	-				-0.7
104,672	-				-0.3
104,672	-				-0.7
104,672	-				+0.2
104,672	-				-1.5
104,672	-				-0.5
104,672	-				+2.5
104,672	-				+0.3
104,672	-				+0.7
104,672	-				+0.8
104,672	-				+0.1
104,672	-				+0.8
104,672	-				-0.3
104,676	+				+0.5
104,676	+				-0.6
104,676	+				-0.3
104,676	+				+0.6
104,677	-				-0.2
104,677	-				-0.3
104,677	-				-0.7
104,677	-				-0.9
104,677	-				-1.1
104,677	-				-0.9
104,698	+				+1.0
104,699	-				+0.5
104,699	-				+0.4
104,699	-				-0.7
105,174	-		Sama_0093	0.18	-0.4
105,174	-		Sama_0093	0.18	+0.5
106,125	-		Sama_0093	0.52	-0.5
106,379	-		Sama_0093	0.61	-0.5
106,381	-		Sama_0093	0.61	-1.3
106,381	-		Sama_0093	0.61	-0.9
106,381	-		Sama_0093	0.61	-0.7
106,480	-		Sama_0093	0.65	-0.5
107,450	-				+0.8
107,501	+				+0.0
107,501	+				+1.0
107,502	-				-1.3
107,555	+				+0.4
107,556	-				-1.1
107,704	+				+0.6
107,704	+				-0.2
107,705	-				-0.5
107,725	+				+0.1
107,725	+				+0.4
107,725	+				+0.4
107,725	+				-0.0
107,725	+				+0.0
107,725	+				-0.9
107,725	+				+0.5
107,725	+				-0.6
107,725	+				-0.1
107,725	+				+0.2
107,726	-				-0.4
107,726	-				-0.9
107,726	-				-0.3
107,726	-				+0.3
107,756	+				+0.1
107,761	+				-0.3
107,762	-				+0.5
107,816	+				-2.5
107,816	+				-0.9
107,820	+				-0.3
107,820	+				-0.6
107,852	+				-0.5
107,961	+		Sama_0094	0.19	+0.0
107,962	-		Sama_0094	0.19	+0.6
107,962	-		Sama_0094	0.19	-1.4
108,063	+		Sama_0094	0.35	+1.1
108,063	+		Sama_0094	0.35	+0.7
108,063	+		Sama_0094	0.35	-2.2
108,063	+		Sama_0094	0.35	+0.2
108,063	+		Sama_0094	0.35	-2.6
108,064	-		Sama_0094	0.35	-0.2
108,064	-		Sama_0094	0.35	-0.5
108,064	-		Sama_0094	0.35	+0.3
108,064	-		Sama_0094	0.35	-0.4
108,064	-		Sama_0094	0.35	-1.3
108,064	-		Sama_0094	0.35	-0.9
108,080	+		Sama_0094	0.37	-0.4
108,080	+		Sama_0094	0.37	+0.5
108,080	+		Sama_0094	0.37	+0.5
108,080	+		Sama_0094	0.37	+0.1
108,081	-		Sama_0094	0.37	+0.4
108,081	-		Sama_0094	0.37	+0.5
108,081	-		Sama_0094	0.37	-0.5
108,108	+		Sama_0094	0.42	+0.1
108,198	+		Sama_0094	0.55	-0.5
108,199	-		Sama_0094	0.56	+1.5
108,231	-		Sama_0094	0.60	+0.1
108,237	+		Sama_0094	0.61	+0.3
108,237	+		Sama_0094	0.61	-0.1
108,237	+		Sama_0094	0.61	-0.0
108,238	-		Sama_0094	0.61	-0.9
108,238	-		Sama_0094	0.61	-1.3
108,238	-		Sama_0094	0.61	+0.5
108,238	-		Sama_0094	0.61	-1.1
108,243	+		Sama_0094	0.62	+0.1
108,243	+		Sama_0094	0.62	-0.0
108,244	-		Sama_0094	0.62	-0.3
108,244	-		Sama_0094	0.62	-0.1
108,244	-		Sama_0094	0.62	-0.0
108,244	-		Sama_0094	0.62	-0.3
108,271	+		Sama_0094	0.67	-1.3
108,271	+		Sama_0094	0.67	-0.5
108,272	-		Sama_0094	0.67	+0.1
108,272	-		Sama_0094	0.67	-0.7
108,276	+		Sama_0094	0.67	-0.5
108,291	+		Sama_0094	0.70	+0.6
108,291	+		Sama_0094	0.70	-0.0
108,291	+		Sama_0094	0.70	-1.1
108,291	+		Sama_0094	0.70	-0.3
108,291	+		Sama_0094	0.70	-0.4
108,292	-		Sama_0094	0.70	+0.4
108,292	-		Sama_0094	0.70	-0.1
108,292	-		Sama_0094	0.70	-0.9
108,292	-		Sama_0094	0.70	+0.6
108,294	+		Sama_0094	0.70	-0.4
108,294	+		Sama_0094	0.70	+0.4
108,294	+		Sama_0094	0.70	-0.1
108,294	+		Sama_0094	0.70	+0.4
108,294	+		Sama_0094	0.70	+1.0
108,294	+		Sama_0094	0.70	+0.0
108,294	+		Sama_0094	0.70	-0.3
108,295	-		Sama_0094	0.70	+1.1
108,295	-		Sama_0094	0.70	-0.3
108,295	-		Sama_0094	0.70	+0.7
108,330	+		Sama_0094	0.76	-1.9
108,330	+		Sama_0094	0.76	+0.1
108,331	-		Sama_0094	0.76	-0.4
108,331	-		Sama_0094	0.76	-1.1
108,363	-		Sama_0094	0.81	+0.6
108,388	-		Sama_0094	0.84	+0.3
108,395	+		Sama_0094	0.85	+0.4
108,395	+		Sama_0094	0.85	-0.5
108,395	+		Sama_0094	0.85	+0.1
108,396	-		Sama_0094	0.86	-0.8
108,396	-		Sama_0094	0.86	-0.1
108,412	+		Sama_0094	0.88	-1.2
108,412	+		Sama_0094	0.88	-0.3
108,412	+		Sama_0094	0.88	-1.0
108,412	+		Sama_0094	0.88	+0.1
108,412	+		Sama_0094	0.88	+0.5
108,412	+		Sama_0094	0.88	-0.2
108,412	+		Sama_0094	0.88	+0.2
108,412	+		Sama_0094	0.88	-0.9
108,412	+		Sama_0094	0.88	+0.3
108,412	+		Sama_0094	0.88	+0.3
108,412	+		Sama_0094	0.88	-0.5
108,412	+		Sama_0094	0.88	-0.1
108,412	+		Sama_0094	0.88	-0.8
108,412	+		Sama_0094	0.88	+0.1
108,412	+		Sama_0094	0.88	-0.4
108,412	+		Sama_0094	0.88	-0.0
108,413	-		Sama_0094	0.88	-0.6
108,413	-		Sama_0094	0.88	-0.4
108,413	-		Sama_0094	0.88	+0.4
108,413	-		Sama_0094	0.88	+0.5
108,413	-		Sama_0094	0.88	-0.3
108,413	-		Sama_0094	0.88	+2.1
108,413	-		Sama_0094	0.88	+0.2
108,413	-		Sama_0094	0.88	-1.5
108,413	-		Sama_0094	0.88	-0.4
108,413	-		Sama_0094	0.88	-1.0
108,413	-		Sama_0094	0.88	+0.0
108,413	-		Sama_0094	0.88	-0.3
108,413	-		Sama_0094	0.88	+0.2
108,413	-		Sama_0094	0.88	-0.4
108,413	-		Sama_0094	0.88	+0.4
108,413	-		Sama_0094	0.88	-0.0
108,413	-		Sama_0094	0.88	+0.7
108,413	-		Sama_0094	0.88	+0.2
108,414	+		Sama_0094	0.88	-0.4
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	+0.1
108,414	+		Sama_0094	0.88	-0.6
108,414	+		Sama_0094	0.88	-1.0
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	+0.9
108,414	+		Sama_0094	0.88	-1.0
108,414	+		Sama_0094	0.88	+0.5
108,414	+		Sama_0094	0.88	-0.5
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	+0.1
108,414	+		Sama_0094	0.88	+0.2
108,414	+		Sama_0094	0.88	-1.0
108,414	+		Sama_0094	0.88	+0.1
108,414	+		Sama_0094	0.88	+0.2
108,414	+		Sama_0094	0.88	+0.6
108,414	+		Sama_0094	0.88	-1.8
108,414	+		Sama_0094	0.88	+0.3
108,414	+		Sama_0094	0.88	-2.9
108,414	+		Sama_0094	0.88	+0.4
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	-0.4
108,414	+		Sama_0094	0.88	-0.8
108,414	+		Sama_0094	0.88	+0.4
108,414	+		Sama_0094	0.88	-0.3
108,414	+		Sama_0094	0.88	+1.0
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	-0.1
108,414	+		Sama_0094	0.88	-0.7
108,414	+		Sama_0094	0.88	+0.6
108,414	+		Sama_0094	0.88	-0.2
108,414	+		Sama_0094	0.88	+0.8
108,414	+		Sama_0094	0.88	-1.0
108,415	-		Sama_0094	0.89	-0.4
108,415	-		Sama_0094	0.89	-0.1
108,415	-		Sama_0094	0.89	-1.2
108,415	-		Sama_0094	0.89	-0.3
108,415	-		Sama_0094	0.89	+0.3
108,415	-		Sama_0094	0.89	-0.5
108,415	-		Sama_0094	0.89	+0.1
108,415	-		Sama_0094	0.89	+1.1
108,415	-		Sama_0094	0.89	+0.6
108,415	-		Sama_0094	0.89	+0.8
108,415	-		Sama_0094	0.89	-1.0
108,415	-		Sama_0094	0.89	+0.8
108,415	-		Sama_0094	0.89	+0.1
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	-1.4
108,415	-		Sama_0094	0.89	-0.0
108,415	-		Sama_0094	0.89	-0.8
108,415	-		Sama_0094	0.89	+0.8
108,415	-		Sama_0094	0.89	+0.5
108,415	-		Sama_0094	0.89	+0.0
108,415	-		Sama_0094	0.89	+0.1
108,415	-		Sama_0094	0.89	+1.2
108,415	-		Sama_0094	0.89	+0.6
108,415	-		Sama_0094	0.89	+0.2
108,415	-		Sama_0094	0.89	-0.4
108,415	-		Sama_0094	0.89	-0.9
108,415	-		Sama_0094	0.89	-0.0
108,415	-		Sama_0094	0.89	-0.7
108,415	-		Sama_0094	0.89	+0.3
108,415	-		Sama_0094	0.89	-0.2
108,415	-		Sama_0094	0.89	+0.8
108,415	-		Sama_0094	0.89	-1.9