Strain Fitness in Shewanella oneidensis MR-1 around SO4690

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
4,888,138	-				+0.7
4,888,139	+				+1.2
4,888,196	+				+1.3
4,888,213	+				+0.2
4,888,247	+				-0.1
4,888,284	-		SO4689	0.12	-2.1
4,888,416	+		SO4689	0.32	+0.9
4,888,417	-		SO4689	0.33	+0.1
4,888,432	+		SO4689	0.35	+0.1
4,888,432	+		SO4689	0.35	+0.8
4,888,486	+		SO4689	0.43	-0.1
4,888,494	-		SO4689	0.44	-0.3
4,888,494	-		SO4689	0.44	+0.2
4,888,513	+		SO4689	0.47	-0.5
4,888,701	-		SO4689	0.76	+2.2
4,888,773	+		SO4689	0.87	-0.4
4,888,821	+				+0.1
4,888,829	-				-0.7
4,888,829	-				+1.0
4,888,829	-				-0.5
4,888,829	-				+0.4
4,888,829	-				+1.3
4,888,829	-				+0.6
4,888,829	-				-0.1
4,888,829	-				-0.2
4,889,102	+				+0.2
4,889,175	-				-0.3
4,889,211	+				+0.2
4,889,219	-				+0.6
4,889,375	-		SO4690	0.16	+0.3
4,889,398	+		SO4690	0.17	+0.6
4,889,439	+		SO4690	0.19	+0.1
4,889,447	-		SO4690	0.20	+0.5
4,889,462	+		SO4690	0.21	-0.8
4,889,488	+		SO4690	0.22	+0.3
4,889,538	-		SO4690	0.25	+0.2
4,889,640	+		SO4690	0.31	-0.3
4,889,648	-		SO4690	0.31	-1.1
4,889,648	-		SO4690	0.31	+0.9
4,889,661	+		SO4690	0.32	-1.0
4,889,663	-		SO4690	0.32	-0.0
4,889,759	+		SO4690	0.38	+0.2
4,889,819	+		SO4690	0.41	-0.5
4,889,827	-		SO4690	0.42	+0.2
4,889,827	-		SO4690	0.42	+0.1
4,889,827	-		SO4690	0.42	-0.0
4,889,827	-		SO4690	0.42	-0.9
4,889,833	-		SO4690	0.42	-0.3
4,889,835	+		SO4690	0.42	-0.3
4,889,882	+		SO4690	0.45	-0.8
4,889,895	-		SO4690	0.46	+0.2
4,889,926	-		SO4690	0.48	+0.0
4,889,996	-		SO4690	0.52	+0.0
4,890,018	-		SO4690	0.53	+0.6
4,890,020	+		SO4690	0.53	-0.8
4,890,054	+		SO4690	0.55	-0.2
4,890,199	+		SO4690	0.63	+0.9
4,890,265	+		SO4690	0.67	+0.1
4,890,265	+		SO4690	0.67	+0.3
4,890,273	-		SO4690	0.68	+0.3
4,890,273	-		SO4690	0.68	+0.2
4,890,273	-		SO4690	0.68	+0.1
4,890,321	-		SO4690	0.70	+0.1
4,890,338	-		SO4690	0.71	+0.2
4,890,340	-		SO4690	0.72	-0.2
4,890,342	-		SO4690	0.72	-0.1
4,890,344	+				+1.2
4,890,352	-		SO4690	0.72	+0.5
4,890,387	-		SO4690	0.74	-0.0
4,890,401	+		SO4690	0.75	+0.4
4,890,401	+		SO4690	0.75	-0.2
4,890,401	+		SO4690	0.75	-0.4
4,890,401	+		SO4690	0.75	+0.7
4,890,401	+		SO4690	0.75	-0.1
4,890,401	+		SO4690	0.75	+0.5
4,890,402	-		SO4690	0.75	-0.4
4,890,409	-		SO4690	0.76	+0.2
4,890,434	-		SO4690	0.77	-0.3
4,890,468	+		SO4690	0.79	+0.4
4,890,468	+		SO4690	0.79	-0.3
4,890,473	+		SO4690	0.79	+0.4
4,890,476	-		SO4690	0.79	+0.2
4,890,490	+		SO4690	0.80	+0.4
4,890,491	-		SO4690	0.80	+0.4
4,890,491	-		SO4690	0.80	+0.7
4,890,547	+		SO4690	0.84	+0.1
4,890,663	+				+0.0
4,890,663	+				-0.3
4,890,668	+				+0.6
4,890,668	+				+0.6
4,890,759	-				+1.2
4,890,813	-				+0.2
4,890,841	-				-0.0
4,890,864	-				-0.3
4,890,940	+				-0.3
4,890,949	+				+0.7
4,891,062	-				+0.0
4,891,095	+				-0.1
4,891,095	+				+0.8
4,891,103	-				-0.7
4,891,128	+				-0.2
4,891,128	+				+0.2
4,891,129	+				+0.2
4,891,139	+				+0.1
4,891,144	+				-0.4
4,891,144	+				-0.1
4,891,144	+				-0.2
4,891,147	-				+0.6
4,891,152	-				-0.6
4,891,164	-				+0.8
4,891,325	+				+0.2
4,891,343	-				-0.0
4,891,348	-				-0.8
4,891,435	+				-0.9
4,891,435	+				+0.9
4,891,443	-				+0.2
4,891,632	+				-0.9
4,891,646	-				-1.1
4,891,735	-				-0.4