Strain Fitness in Shewanella oneidensis MR-1 around SO4250

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
4,427,375	+	dut	SO4250	0.16	+0.1
4,427,514	+	dut	SO4250	0.46	+0.1
4,427,514	+	dut	SO4250	0.46	-0.8
4,427,514	+	dut	SO4250	0.46	+0.2
4,427,514	+	dut	SO4250	0.46	-0.6
4,427,514	+	dut	SO4250	0.46	+0.2
4,427,519	+	dut	SO4250	0.47	-0.1
4,427,522	-	dut	SO4250	0.48	-0.2
4,427,522	-	dut	SO4250	0.48	+0.5
4,427,522	-	dut	SO4250	0.48	-0.3
4,427,546	-	dut	SO4250	0.53	+0.3
4,427,622	+	dut	SO4250	0.69	+0.8
4,427,665	-	dut	SO4250	0.79	-0.2
4,427,791	-				+0.0
4,427,795	+				-2.4
4,427,840	-				-0.8
4,427,840	-				+0.9
4,427,863	+		SO4251	0.12	-0.0
4,427,908	+		SO4251	0.19	+0.1
4,427,993	+		SO4251	0.34	-0.5
4,428,036	+		SO4251	0.41	+0.5
4,428,057	+		SO4251	0.44	-0.7
4,428,232	-		SO4251	0.74	+0.1
4,428,252	+		SO4251	0.77	-0.9
4,428,338	-				-0.6
4,428,655	-				-0.3