Strain Fitness in Shewanella oneidensis MR-1 around SO3037

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,147,579	-				+1.3
3,147,643	-				-0.8
3,147,671	-				-0.7
3,147,866	-	ispZ	SO3035	0.30	-1.2
3,147,888	-	ispZ	SO3035	0.34	-1.2
3,147,896	+	ispZ	SO3035	0.35	-0.1
3,147,896	+	ispZ	SO3035	0.35	-1.5
3,147,904	-	ispZ	SO3035	0.37	-2.3
3,148,031	-	ispZ	SO3035	0.60	-1.6
3,148,104	-	ispZ	SO3035	0.73	-0.6
3,148,165	+	ispZ	SO3035	0.85	-1.7
3,148,166	+	ispZ	SO3035	0.85	-0.6
3,148,166	+	ispZ	SO3035	0.85	-0.5
3,148,174	-	ispZ	SO3035	0.86	-1.2
3,148,196	+				-1.2
3,148,266	+				-0.7
3,148,368	+		SO3036	0.40	-0.8
3,148,376	-		SO3036	0.43	-2.0
3,148,458	+		SO3036	0.70	-0.3
3,148,458	+		SO3036	0.70	-0.9
3,148,458	+		SO3036	0.70	-0.3
3,148,458	+		SO3036	0.70	-1.7
3,148,458	+		SO3036	0.70	-0.7
3,148,458	+		SO3036	0.70	+0.4
3,148,458	+		SO3036	0.70	-0.1
3,148,458	+		SO3036	0.70	+0.6
3,148,458	+		SO3036	0.70	-1.1
3,148,458	+		SO3036	0.70	-0.5
3,148,461	-		SO3036	0.71	-1.2
3,148,466	-		SO3036	0.73	-1.4
3,148,466	-		SO3036	0.73	-2.0
3,148,466	-		SO3036	0.73	-1.3
3,148,466	-		SO3036	0.73	-1.0
3,148,466	-		SO3036	0.73	+0.3
3,148,466	-		SO3036	0.73	-1.1
3,148,505	-		SO3036	0.86	-2.2
3,148,691	+	xth	SO3037	0.18	-0.1
3,148,750	+	xth	SO3037	0.25	-2.3
3,148,750	-	xth	SO3037	0.25	-1.0
3,148,772	-	xth	SO3037	0.28	-1.8
3,148,830	+	xth	SO3037	0.35	-1.4
3,148,840	+	xth	SO3037	0.36	-2.1
3,148,901	-	xth	SO3037	0.44	-2.0
3,148,901	-	xth	SO3037	0.44	-2.0
3,148,932	-	xth	SO3037	0.47	-0.4
3,149,152	+	xth	SO3037	0.74	-1.4
3,149,167	+	xth	SO3037	0.76	-1.1
3,149,242	-	xth	SO3037	0.85	-1.5
3,149,343	+				-0.4
3,149,343	+				-1.1
3,149,343	+				-0.2
3,149,351	-				-0.2
3,149,351	-				+0.3
3,149,361	-				-0.4
3,149,422	+				-0.4
3,149,430	-				+0.5
3,149,441	-				+0.8
3,149,511	-		SO_3038	0.21	-0.6
3,149,511	-		SO_3038	0.21	+0.1
3,149,564	+		SO_3038	0.42	-1.0
3,149,622	+		SO_3038	0.65	-0.3
3,149,751	+				-0.2
3,149,769	-				+0.3
3,149,769	-				-0.4
3,149,769	-				+0.1
3,149,791	+				+0.1
3,149,836	+				+0.2
3,149,966	-				+0.3
3,149,995	+				-0.1
3,149,995	+				-1.5
3,149,995	+				+0.5
3,150,003	-				-0.6
3,150,038	-				+0.7
3,150,078	+				-0.1
3,150,105	+				+0.4
3,150,110	+				+0.4
3,150,110	+				+0.1
3,150,110	+				+0.0
3,150,116	+				+0.1
3,150,118	-				-0.5
3,150,118	-				-0.0
3,150,118	-				+1.0
3,150,118	-				-1.1
3,150,118	-				+0.7
3,150,124	-				+0.3
3,150,124	-				+0.8
3,150,124	-				+0.2
3,150,124	-				+0.2
3,150,124	-				-0.4
3,150,124	-				-0.4
3,150,124	-				+0.1
3,150,124	-				+0.0
3,150,124	-				+0.1
3,150,124	-				-0.0
3,150,124	-				+0.1
3,150,124	-				-0.4
3,150,134	+				-0.2
3,150,172	+				+0.8
3,150,172	+				+1.2
3,150,172	+				-1.4
3,150,172	+				-0.4
3,150,173	-				-0.3
3,150,180	-				-0.3
3,150,274	+				-0.5
3,150,293	-				-0.3
3,150,353	+				-0.1
3,150,357	+				-0.4