Strain Fitness in Shewanella oneidensis MR-1 around SO2942

Experiment: D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2940 and SO2941 are separated by 4 nucleotidesSO2941 and SO2942 are separated by 76 nucleotidesSO2942 and SO2943 are separated by 77 nucleotidesSO2943 and SO2944 are separated by 67 nucleotides SO2940: SO2940 - prophage LambdaSo, host specificity protein J, putative (NCBI ptt file), at 3,076,443 to 3,080,468 SO2940 SO2941: SO2941 - prophage LambdaSo, tail assembly protein I (NCBI ptt file), at 3,080,473 to 3,081,102 SO2941 SO2942: SO2942 - hypothetical protein (NCBI ptt file), at 3,081,179 to 3,081,745 SO2942 SO2943: SO2943 - conserved domain protein (NCBI ptt file), at 3,081,823 to 3,082,080 SO2943 SO2944: SO2944 - hypothetical protein (NCBI ptt file), at 3,082,148 to 3,083,743 SO2944 Position (kb) 3081 3082Strain fitness (log2 ratio) -2 -1 0 1 2at 3080.271 kb on + strandat 3080.315 kb on - strandat 3080.357 kb on - strandat 3080.657 kb on + strand, within SO2941at 3080.664 kb on - strand, within SO2941at 3080.665 kb on + strand, within SO2941at 3080.673 kb on - strand, within SO2941at 3080.713 kb on + strand, within SO2941at 3080.713 kb on + strand, within SO2941at 3080.734 kb on + strand, within SO2941at 3080.749 kb on + strand, within SO2941at 3080.750 kb on + strand, within SO2941at 3080.767 kb on - strand, within SO2941at 3080.799 kb on - strand, within SO2941at 3080.891 kb on - strand, within SO2941at 3081.054 kb on + strandat 3081.087 kb on + strandat 3081.098 kb on + strandat 3081.106 kb on - strandat 3081.205 kb on + strandat 3081.223 kb on + strandat 3081.237 kb on + strand, within SO2942at 3081.259 kb on + strand, within SO2942at 3081.271 kb on + strand, within SO2942at 3081.279 kb on - strand, within SO2942at 3081.393 kb on + strand, within SO2942at 3081.667 kb on + strand, within SO2942at 3081.667 kb on + strand, within SO2942at 3081.779 kb on + strandat 3081.793 kb on + strandat 3081.793 kb on + strandat 3081.843 kb on - strandat 3081.859 kb on - strand, within SO2943at 3081.916 kb on + strand, within SO2943at 3081.948 kb on + strand, within SO2943at 3082.040 kb on - strand, within SO2943at 3082.056 kb on + strandat 3082.062 kb on + strandat 3082.129 kb on + strandat 3082.129 kb on + strandat 3082.129 kb on + strandat 3082.129 kb on + strandat 3082.137 kb on - strandat 3082.137 kb on - strandat 3082.137 kb on - strandat 3082.187 kb on - strandat 3082.311 kb on - strand, within SO2944at 3082.353 kb on - strand, within SO2944at 3082.369 kb on - strand, within SO2944at 3082.376 kb on - strand, within SO2944at 3082.447 kb on + strand, within SO2944at 3082.506 kb on - strand, within SO2944at 3082.514 kb on + strand, within SO2944at 3082.565 kb on - strand, within SO2944at 3082.565 kb on - strand, within SO2944at 3082.607 kb on + strand, within SO2944at 3082.613 kb on - strand, within SO2944at 3082.615 kb on - strand, within SO2944at 3082.623 kb on - strand, within SO2944at 3082.687 kb on + strand, within SO2944at 3082.695 kb on - strand, within SO2944at 3082.716 kb on - strand, within SO2944at 3082.716 kb on - strand, within SO2944at 3082.716 kb on - strand, within SO2944at 3082.736 kb on + strand, within SO2944

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml
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3,080,271 + +0.3
3,080,315 - +0.8
3,080,357 - -0.3
3,080,657 + SO2941 0.29 +1.1
3,080,664 - SO2941 0.30 +0.6
3,080,665 + SO2941 0.30 +0.6
3,080,673 - SO2941 0.32 +0.5
3,080,713 + SO2941 0.38 +0.1
3,080,713 + SO2941 0.38 +1.1
3,080,734 + SO2941 0.41 +0.1
3,080,749 + SO2941 0.44 -0.5
3,080,750 + SO2941 0.44 -0.2
3,080,767 - SO2941 0.47 +0.5
3,080,799 - SO2941 0.52 +0.2
3,080,891 - SO2941 0.66 -1.0
3,081,054 + +0.1
3,081,087 + +0.2
3,081,098 + +0.6
3,081,106 - +1.1
3,081,205 + +1.6
3,081,223 + +0.8
3,081,237 + SO2942 0.10 +1.0
3,081,259 + SO2942 0.14 +1.9
3,081,271 + SO2942 0.16 +0.9
3,081,279 - SO2942 0.18 +0.4
3,081,393 + SO2942 0.38 +0.3
3,081,667 + SO2942 0.86 +0.0
3,081,667 + SO2942 0.86 +0.8
3,081,779 + +0.7
3,081,793 + +1.0
3,081,793 + +0.1
3,081,843 - +0.9
3,081,859 - SO2943 0.14 +0.5
3,081,916 + SO2943 0.36 +0.2
3,081,948 + SO2943 0.48 +1.2
3,082,040 - SO2943 0.84 +0.3
3,082,056 + +1.1
3,082,062 + +0.9
3,082,129 + +0.6
3,082,129 + +0.4
3,082,129 + +0.9
3,082,129 + +0.4
3,082,137 - -2.5
3,082,137 - +1.2
3,082,137 - +0.6
3,082,187 - +0.8
3,082,311 - SO2944 0.10 +1.2
3,082,353 - SO2944 0.13 +1.0
3,082,369 - SO2944 0.14 +1.7
3,082,376 - SO2944 0.14 -0.2
3,082,447 + SO2944 0.19 +1.1
3,082,506 - SO2944 0.22 +0.5
3,082,514 + SO2944 0.23 +1.1
3,082,565 - SO2944 0.26 +0.3
3,082,565 - SO2944 0.26 +0.9
3,082,607 + SO2944 0.29 +0.3
3,082,613 - SO2944 0.29 +0.7
3,082,615 - SO2944 0.29 +2.6
3,082,623 - SO2944 0.30 -0.1
3,082,687 + SO2944 0.34 +0.0
3,082,695 - SO2944 0.34 +1.1
3,082,716 - SO2944 0.36 +0.8
3,082,716 - SO2944 0.36 +0.6
3,082,716 - SO2944 0.36 +0.6
3,082,736 + SO2944 0.37 +0.5

Or see this region's nucleotide sequence