Strain Fitness in Shewanella oneidensis MR-1 around SO2940

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,075,446	+				+0.1
3,075,446	+				+0.1
3,075,524	-		SO2939	0.16	-0.0
3,075,541	-		SO2939	0.19	-0.2
3,075,594	+		SO2939	0.26	-0.4
3,075,596	+		SO2939	0.26	+0.1
3,075,596	+		SO2939	0.26	-0.4
3,075,597	-		SO2939	0.26	+0.2
3,075,597	-		SO2939	0.26	+0.1
3,075,604	-		SO2939	0.27	+0.5
3,075,604	-		SO2939	0.27	+0.3
3,075,604	-		SO2939	0.27	+0.3
3,075,609	-		SO2939	0.28	+0.8
3,075,663	+		SO2939	0.36	+0.5
3,075,671	-		SO2939	0.37	+0.1
3,075,685	+		SO2939	0.39	+0.0
3,075,693	-		SO2939	0.40	+0.2
3,075,760	+		SO2939	0.49	+0.7
3,075,827	+		SO2939	0.59	+0.2
3,075,865	+		SO2939	0.64	+1.2
3,075,873	-		SO2939	0.65	+0.4
3,075,873	-		SO2939	0.65	-0.2
3,075,873	-		SO2939	0.65	+0.5
3,075,881	-		SO2939	0.66	-0.2
3,075,906	+		SO2939	0.70	+0.8
3,075,944	-		SO2939	0.75	+0.2
3,075,946	-		SO2939	0.76	+0.6
3,076,114	+				+0.5
3,076,114	+				+1.1
3,076,149	+				+0.1
3,076,150	+				+0.1
3,076,157	-				+0.6
3,076,158	-				+0.3
3,076,158	-				+0.3
3,076,169	-				+0.8
3,076,169	-				+0.1
3,076,190	-				+0.4
3,076,205	+				+0.3
3,076,219	+				+0.2
3,076,260	+				+0.1
3,076,268	+				+0.8
3,076,275	+				+0.4
3,076,275	+				+0.3
3,076,292	+				+0.9
3,076,334	-				+0.4
3,076,344	-				+0.2
3,076,354	-				+0.1
3,076,355	-				-0.5
3,076,362	-				+0.4
3,076,384	+				+0.6
3,076,397	-				+0.7
3,076,434	+				-0.5
3,076,442	-				+0.2
3,076,524	+				+0.9
3,076,524	+				+0.7
3,076,532	-				+0.5
3,076,566	-				+0.4
3,076,567	-				+0.8
3,076,572	-				+1.0
3,076,621	+				+0.9
3,076,686	+				-0.6
3,076,694	-				+0.2
3,076,694	-				+0.0
3,076,704	-				+0.2
3,076,784	+				-0.1
3,076,784	+				+0.1
3,076,794	+				+0.4
3,076,802	-				+0.8
3,076,927	+		SO2940	0.12	+0.5
3,076,952	-		SO2940	0.13	+0.3
3,076,964	-		SO2940	0.13	+0.2
3,077,023	+		SO2940	0.14	+0.6
3,077,030	+		SO2940	0.15	+1.4
3,077,031	-		SO2940	0.15	+0.5
3,077,035	+		SO2940	0.15	+0.2
3,077,035	+		SO2940	0.15	+0.4
3,077,040	+		SO2940	0.15	+0.0
3,077,040	+		SO2940	0.15	-0.2
3,077,040	+		SO2940	0.15	+0.4
3,077,040	+		SO2940	0.15	+0.6
3,077,043	-		SO2940	0.15	-0.2
3,077,048	-		SO2940	0.15	+0.5
3,077,088	-		SO2940	0.16	+2.1
3,077,119	+		SO2940	0.17	+0.3
3,077,127	-		SO2940	0.17	+0.1
3,077,215	+		SO2940	0.19	+0.2
3,077,222	+		SO2940	0.19	-0.5
3,077,240	-		SO2940	0.20	+0.2
3,077,240	-		SO2940	0.20	+0.1
3,077,366	-		SO2940	0.23	+1.1
3,077,596	-		SO2940	0.29	+0.3
3,077,738	+		SO2940	0.32	-0.2
3,077,823	-		SO2940	0.34	-0.4
3,077,860	+		SO2940	0.35	+0.0
3,077,868	+		SO2940	0.35	+0.4
3,077,965	+		SO2940	0.38	+1.4
3,077,969	-		SO2940	0.38	+0.5
3,077,976	+		SO2940	0.38	+0.4
3,077,982	-		SO2940	0.38	+0.1
3,078,061	-		SO2940	0.40	+0.0
3,078,111	+		SO2940	0.41	+0.2
3,078,111	+		SO2940	0.41	+0.8
3,078,112	-		SO2940	0.41	-2.1
3,078,119	-		SO2940	0.42	+0.5
3,078,121	+		SO2940	0.42	+0.2
3,078,143	-		SO2940	0.42	+0.4
3,078,219	+		SO2940	0.44	+0.4
3,078,221	+		SO2940	0.44	+0.2
3,078,272	-		SO2940	0.45	+0.3
3,078,332	+		SO2940	0.47	+1.2
3,078,340	-		SO2940	0.47	-0.0
3,078,393	+		SO2940	0.48	+0.5
3,078,457	-		SO2940	0.50	+0.6
3,078,573	-		SO2940	0.53	+0.1
3,078,604	+		SO2940	0.54	-0.6
3,078,730	+		SO2940	0.57	+0.6
3,078,755	+		SO2940	0.57	-0.3
3,078,755	+		SO2940	0.57	+1.1
3,078,755	+		SO2940	0.57	+0.5
3,078,755	+		SO2940	0.57	-1.0
3,078,757	-		SO2940	0.57	-0.4
3,078,763	-		SO2940	0.58	-0.5
3,078,812	+		SO2940	0.59	+0.1
3,078,812	+		SO2940	0.59	-0.0
3,078,820	-		SO2940	0.59	+0.0
3,078,820	-		SO2940	0.59	+0.1
3,078,845	-		SO2940	0.60	+1.0
3,078,856	+		SO2940	0.60	+0.6
3,078,856	-		SO2940	0.60	+0.0
3,078,861	+		SO2940	0.60	+0.2
3,078,863	+		SO2940	0.60	+0.4
3,078,885	+		SO2940	0.61	+0.6
3,078,935	-		SO2940	0.62	+0.6
3,079,088	-		SO2940	0.66	-0.0
3,079,112	-		SO2940	0.66	+0.7
3,079,354	+		SO2940	0.72	-0.4
3,079,354	+		SO2940	0.72	+0.5
3,079,362	-		SO2940	0.73	-0.5
3,079,372	+		SO2940	0.73	+0.3
3,079,502	+		SO2940	0.76	+0.5
3,079,504	+		SO2940	0.76	+1.5
3,079,512	-		SO2940	0.76	+0.7
3,079,512	-		SO2940	0.76	+0.3
3,079,610	+		SO2940	0.79	+0.4
3,079,668	-		SO2940	0.80	-0.3
3,079,781	-		SO2940	0.83	+0.2
3,079,971	+		SO2940	0.88	+1.0
3,079,971	+		SO2940	0.88	-0.9
3,079,971	+		SO2940	0.88	+1.1
3,079,971	+		SO2940	0.88	+0.7
3,079,979	-		SO2940	0.88	+0.4
3,080,045	-		SO2940	0.89	+1.5
3,080,082	-				-0.8
3,080,098	+				+1.2
3,080,098	+				-0.1
3,080,106	-				+0.4
3,080,106	-				-0.7
3,080,128	+				+0.1
3,080,128	+				+0.0
3,080,136	-				+0.1
3,080,271	+				+0.3
3,080,315	-				+0.8
3,080,357	-				-0.3
3,080,657	+		SO2941	0.29	+1.1
3,080,664	-		SO2941	0.30	+0.6
3,080,665	+		SO2941	0.30	+0.6
3,080,673	-		SO2941	0.32	+0.5
3,080,713	+		SO2941	0.38	+0.1
3,080,713	+		SO2941	0.38	+1.1
3,080,734	+		SO2941	0.41	+0.1
3,080,749	+		SO2941	0.44	-0.5
3,080,750	+		SO2941	0.44	-0.2
3,080,767	-		SO2941	0.47	+0.5
3,080,799	-		SO2941	0.52	+0.2
3,080,891	-		SO2941	0.66	-1.0
3,081,054	+				+0.1
3,081,087	+				+0.2
3,081,098	+				+0.6
3,081,106	-				+1.1
3,081,205	+				+1.6
3,081,223	+				+0.8
3,081,237	+		SO2942	0.10	+1.0
3,081,259	+		SO2942	0.14	+1.9
3,081,271	+		SO2942	0.16	+0.9
3,081,279	-		SO2942	0.18	+0.4
3,081,393	+		SO2942	0.38	+0.3