Strain Fitness in Shewanella oneidensis MR-1 around SO2672

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,798,514	+		SO2670	0.27	+0.0
2,798,522	-		SO2670	0.28	+0.4
2,798,550	-		SO2670	0.35	+0.3
2,798,554	+		SO2670	0.36	-0.1
2,798,598	+		SO2670	0.45	-0.1
2,798,598	+		SO2670	0.45	+0.1
2,798,598	+		SO2670	0.45	-1.0
2,798,598	+		SO2670	0.45	+0.7
2,798,598	+		SO2670	0.45	+0.1
2,798,603	+		SO2670	0.47	+0.1
2,798,603	+		SO2670	0.47	+0.2
2,798,606	-		SO2670	0.47	-1.0
2,798,606	-		SO2670	0.47	+0.0
2,798,606	-		SO2670	0.47	+0.3
2,798,606	-		SO2670	0.47	+0.8
2,798,606	-		SO2670	0.47	-0.3
2,798,621	-		SO2670	0.51	+0.1
2,798,629	-		SO2670	0.52	+0.2
2,798,704	-		SO2670	0.69	-0.9
2,798,745	+		SO2670	0.78	-0.0
2,798,748	-		SO2670	0.79	-0.5
2,798,750	+		SO2670	0.79	+0.1
2,798,779	+		SO2670	0.86	+0.3
2,798,851	+				+0.8
2,798,883	-				+0.6
2,798,912	+				-0.9
2,798,920	-				+0.8
2,798,923	+				+0.2
2,798,928	+				+0.8
2,798,929	+				+0.4
2,798,981	+		SO2671	0.11	+0.6
2,798,981	+		SO2671	0.11	+0.2
2,798,984	+		SO2671	0.11	+0.8
2,798,989	-		SO2671	0.12	+0.2
2,798,989	-		SO2671	0.12	+1.4
2,798,991	+		SO2671	0.12	+0.1
2,798,991	+		SO2671	0.12	+0.7
2,798,991	+		SO2671	0.12	+0.2
2,798,999	-		SO2671	0.14	+0.0
2,799,003	+		SO2671	0.14	+0.7
2,799,003	+		SO2671	0.14	-0.7
2,799,003	+		SO2671	0.14	+1.4
2,799,003	+		SO2671	0.14	+0.2
2,799,003	+		SO2671	0.14	+0.2
2,799,003	+		SO2671	0.14	+0.7
2,799,011	-		SO2671	0.16	-0.8
2,799,011	-		SO2671	0.16	+0.1
2,799,011	-		SO2671	0.16	+1.6
2,799,011	-		SO2671	0.16	+1.2
2,799,011	-		SO2671	0.16	+2.5
2,799,011	-		SO2671	0.16	+1.0
2,799,011	-		SO2671	0.16	-0.6
2,799,011	-		SO2671	0.16	+0.5
2,799,013	+		SO2671	0.16	+0.3
2,799,021	-		SO2671	0.17	+0.4
2,799,021	-		SO2671	0.17	+1.2
2,799,027	+		SO2671	0.18	+0.6
2,799,040	+		SO2671	0.21	+0.3
2,799,051	+		SO2671	0.23	-0.3
2,799,099	-		SO2671	0.31	+1.6
2,799,161	-		SO2671	0.41	+0.6
2,799,233	+		SO2671	0.53	+0.7
2,799,241	-		SO2671	0.55	+1.2
2,799,332	+		SO2671	0.70	+0.3
2,799,467	-				+1.2
2,799,500	+				+0.6
2,799,563	-		SO2672	0.21	+0.7
2,799,611	+		SO2672	0.39	+0.9
2,799,662	+		SO2672	0.59	+0.2
2,799,662	+		SO2672	0.59	+0.8
2,799,670	-		SO2672	0.62	+1.2
2,799,670	-		SO2672	0.62	+0.4
2,799,670	-		SO2672	0.62	-0.2
2,799,670	-		SO2672	0.62	+1.3
2,799,670	-		SO2672	0.62	+1.0
2,799,670	-		SO2672	0.62	+1.3
2,799,797	+				-0.6
2,799,829	-		SO2673	0.12	+0.2
2,799,980	+		SO2673	0.37	+0.9
2,800,200	-		SO2673	0.73	+1.3
2,800,204	+		SO2673	0.74	+0.2
2,800,204	+		SO2673	0.74	-0.2
2,800,276	+		SO2673	0.86	+0.1
2,800,284	-		SO2673	0.87	+0.1
2,800,323	+				-0.3
2,800,372	+				-0.2
2,800,609	+		SO2675	0.11	+0.3
2,800,653	+		SO2675	0.25	-0.4
2,800,664	+		SO2675	0.29	-0.5
2,800,675	+		SO2675	0.33	+0.6
2,800,683	-		SO2675	0.35	-1.2
2,800,723	+		SO2675	0.49	+0.6
2,800,723	+		SO2675	0.49	+0.5
2,800,725	+		SO2675	0.49	+1.4
2,800,725	+		SO2675	0.49	+1.0