Strain Fitness in Shewanella oneidensis MR-1 around SO2385

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,486,418	+		SO2384	0.32	+0.1
2,486,470	+		SO2384	0.37	+1.8
2,486,480	+		SO2384	0.38	+0.2
2,486,487	-		SO2384	0.39	-0.3
2,486,488	-		SO2384	0.39	+0.9
2,486,603	+		SO2384	0.49	-0.1
2,486,628	+		SO2384	0.51	-0.1
2,486,650	+		SO2384	0.53	-0.6
2,486,650	+		SO2384	0.53	+0.5
2,486,657	-		SO2384	0.54	-0.6
2,486,661	+		SO2384	0.54	-2.9
2,486,661	+		SO2384	0.54	+0.3
2,486,661	+		SO2384	0.54	+0.1
2,486,669	-		SO2384	0.55	-0.2
2,486,763	+		SO2384	0.64	-0.1
2,486,763	+		SO2384	0.64	-0.0
2,486,763	+		SO2384	0.64	+0.5
2,486,763	+		SO2384	0.64	-0.7
2,486,763	+		SO2384	0.64	+1.2
2,486,763	+		SO2384	0.64	-0.4
2,486,763	+		SO2384	0.64	+0.0
2,486,763	+		SO2384	0.64	-0.2
2,486,763	+		SO2384	0.64	+0.7
2,486,764	+		SO2384	0.64	-0.0
2,486,764	+		SO2384	0.64	+0.2
2,486,764	+		SO2384	0.64	-0.8
2,486,764	+		SO2384	0.64	+0.2
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	-0.2
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.7
2,486,764	+		SO2384	0.64	+0.4
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+1.2
2,486,764	+		SO2384	0.64	+0.4
2,486,764	+		SO2384	0.64	-1.2
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.2
2,486,764	+		SO2384	0.64	+0.3
2,486,764	+		SO2384	0.64	-0.5
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	-0.0
2,486,764	+		SO2384	0.64	+0.0
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.5
2,486,764	+		SO2384	0.64	+0.4
2,486,764	+		SO2384	0.64	-0.9
2,486,764	+		SO2384	0.64	+0.1
2,486,764	+		SO2384	0.64	+0.8
2,486,764	+		SO2384	0.64	-0.7
2,486,764	+		SO2384	0.64	+0.8
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	-0.4
2,486,764	+		SO2384	0.64	-0.6
2,486,764	+		SO2384	0.64	+0.7
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	-1.4
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+0.6
2,486,764	+		SO2384	0.64	+0.2
2,486,764	+		SO2384	0.64	+0.2
2,486,764	+		SO2384	0.64	-0.5
2,486,764	+		SO2384	0.64	+0.3
2,486,764	+		SO2384	0.64	-1.0
2,486,764	+		SO2384	0.64	-0.1
2,486,764	+		SO2384	0.64	+0.5
2,486,770	-		SO2384	0.64	+1.0
2,486,771	-		SO2384	0.64	-0.4
2,486,772	-		SO2384	0.64	+0.8
2,486,772	-		SO2384	0.64	-1.0
2,486,772	-		SO2384	0.64	-0.4
2,486,772	-		SO2384	0.64	+0.5
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	-0.2
2,486,772	-		SO2384	0.64	-0.2
2,486,772	-		SO2384	0.64	+0.6
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	+0.0
2,486,772	-		SO2384	0.64	+0.3
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	+0.4
2,486,772	-		SO2384	0.64	+1.6
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	+0.8
2,486,772	-		SO2384	0.64	+0.9
2,486,772	-		SO2384	0.64	+0.2
2,486,772	-		SO2384	0.64	-0.2
2,486,772	-		SO2384	0.64	+0.7
2,486,772	-		SO2384	0.64	+0.6
2,486,772	-		SO2384	0.64	+0.0
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.7
2,486,772	-		SO2384	0.64	+0.6
2,486,772	-		SO2384	0.64	-0.5
2,486,772	-		SO2384	0.64	+0.9
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.7
2,486,772	-		SO2384	0.64	+0.7
2,486,772	-		SO2384	0.64	-0.6
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	+0.1
2,486,772	-		SO2384	0.64	-0.6
2,486,772	-		SO2384	0.64	-0.4
2,486,772	-		SO2384	0.64	-0.8
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	+0.8
2,486,772	-		SO2384	0.64	-0.1
2,486,772	-		SO2384	0.64	-0.3
2,486,772	-		SO2384	0.64	+0.7
2,486,772	-		SO2384	0.64	-0.0
2,486,772	-		SO2384	0.64	-0.7
2,486,774	+		SO2384	0.65	-0.5
2,486,774	+		SO2384	0.65	+0.2
2,486,782	-		SO2384	0.65	-0.1
2,486,782	-		SO2384	0.65	-0.2
2,486,782	-		SO2384	0.65	-0.0
2,486,785	-		SO2384	0.65	-0.1
2,486,848	+		SO2384	0.71	-0.1
2,486,893	+		SO2384	0.75	-1.4
2,486,893	+		SO2384	0.75	+0.5
2,486,893	+		SO2384	0.75	-0.3
2,486,893	+		SO2384	0.75	+0.4
2,486,893	+		SO2384	0.75	-0.7
2,486,901	-		SO2384	0.76	-0.8
2,486,901	-		SO2384	0.76	+0.2
2,486,901	-		SO2384	0.76	+0.6
2,486,902	-		SO2384	0.76	+0.2
2,486,916	+		SO2384	0.77	+0.2
2,486,921	+		SO2384	0.78	-1.3
2,486,923	-		SO2384	0.78	+0.4
2,486,932	+		SO2384	0.79	-0.1
2,486,935	-		SO2384	0.79	-0.3
2,487,034	-		SO2384	0.88	+0.7
2,487,034	-		SO2384	0.88	+0.3
2,487,034	-		SO2384	0.88	+0.6
2,487,034	-		SO2384	0.88	+0.1
2,487,058	+				-1.8
2,487,104	+				+0.9
2,487,114	+				+0.0
2,487,114	+				+0.6
2,487,116	-				+0.4
2,487,118	+				+0.5
2,487,122	-				+0.0
2,487,122	-				-0.1
2,487,133	+				-0.5
2,487,133	+				+0.9
2,487,141	-				-0.1
2,487,300	+				-1.0
2,487,364	+				-0.5
2,487,364	+				-0.9
2,487,364	+				+0.9
2,487,364	+				+0.2
2,487,364	+				+0.1
2,487,364	+				+1.2
2,487,372	-				+0.9
2,487,457	+				-0.2
2,487,470	-				+0.4
2,487,490	+				+0.2
2,487,508	-				-0.2
2,487,510	+				+0.8
2,487,541	-				+0.8
2,487,544	+				-0.1
2,487,555	-				-0.2
2,487,562	-		SO2385	0.10	+0.3
2,487,563	-		SO2385	0.10	-0.5
2,487,607	-		SO2385	0.12	+0.2
2,487,614	+		SO2385	0.13	+1.3
2,487,614	+		SO2385	0.13	-0.2
2,487,763	-		SO2385	0.20	+0.1
2,487,776	-		SO2385	0.21	+0.2
2,488,106	-		SO2385	0.37	+1.6
2,488,120	+		SO2385	0.37	+0.1
2,488,120	+		SO2385	0.37	+0.8
2,488,150	-		SO2385	0.39	+0.3
2,488,150	-		SO2385	0.39	+0.7
2,488,354	+		SO2385	0.49	+1.3
2,488,354	-		SO2385	0.49	-0.1
2,488,416	+		SO2385	0.52	+0.4
2,488,416	+		SO2385	0.52	+0.3
2,488,416	+		SO2385	0.52	-0.2
2,488,424	-		SO2385	0.52	+0.3
2,488,424	-		SO2385	0.52	-0.5
2,488,424	-		SO2385	0.52	+0.3
2,488,424	-		SO2385	0.52	-0.0
2,488,424	-		SO2385	0.52	+0.2
2,488,424	-		SO2385	0.52	+1.0
2,488,424	-		SO2385	0.52	+0.7
2,488,424	-		SO2385	0.52	+0.2
2,488,457	+		SO2385	0.54	+0.0
2,488,479	+		SO2385	0.55	+0.1
2,488,700	-		SO2385	0.66	-0.1
2,488,830	-		SO2385	0.72	-0.3
2,489,042	-		SO2385	0.82	-0.0
2,489,134	+		SO2385	0.87	+0.1
2,489,375	-				-0.6
2,489,546	-				+0.6
2,489,777	-				+0.1
2,489,777	-				+0.6
2,489,866	+		SO2387	0.15	+0.1
2,489,874	-		SO2387	0.16	-0.8
2,489,909	-		SO2387	0.21	-1.0
2,489,967	+		SO2387	0.28	-0.3
2,489,985	-		SO2387	0.31	-0.3