Strain Fitness in Shewanella oneidensis MR-1 around SO1559

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,634,292	+				+0.6
1,634,300	-				+0.1
1,634,300	-				-0.0
1,634,495	-				-0.0
1,634,568	-	phoB	SO1558	0.16	-0.5
1,634,613	-	phoB	SO1558	0.22	-0.0
1,634,613	-	phoB	SO1558	0.22	+0.1
1,634,615	+	phoB	SO1558	0.22	+0.4
1,634,615	+	phoB	SO1558	0.22	+0.3
1,634,615	+	phoB	SO1558	0.22	+0.7
1,634,623	-	phoB	SO1558	0.23	+1.0
1,634,623	-	phoB	SO1558	0.23	+0.4
1,634,623	-	phoB	SO1558	0.23	-0.1
1,634,623	-	phoB	SO1558	0.23	+1.0
1,634,648	-	phoB	SO1558	0.27	-0.2
1,634,756	+	phoB	SO1558	0.42	+0.1
1,634,763	-	phoB	SO1558	0.43	-0.1
1,634,764	+	phoB	SO1558	0.43	-0.2
1,634,814	-	phoB	SO1558	0.50	+0.3
1,634,846	-	phoB	SO1558	0.54	+0.0
1,634,925	-	phoB	SO1558	0.65	+0.6
1,635,227	+				+0.9
1,635,237	+				-0.4
1,635,449	+	phoR	SO1559	0.15	-0.6
1,635,449	+	phoR	SO1559	0.15	+0.2
1,635,449	+	phoR	SO1559	0.15	+0.2
1,635,563	+	phoR	SO1559	0.24	-0.6
1,635,563	+	phoR	SO1559	0.24	-0.6
1,635,569	+	phoR	SO1559	0.24	+0.7
1,635,571	-	phoR	SO1559	0.24	-0.4
1,635,571	-	phoR	SO1559	0.24	+0.2
1,635,592	+	phoR	SO1559	0.26	-0.3
1,635,592	+	phoR	SO1559	0.26	+1.9
1,635,595	-	phoR	SO1559	0.26	-0.4
1,635,605	-	phoR	SO1559	0.27	-0.2
1,635,605	-	phoR	SO1559	0.27	+0.2
1,635,619	-	phoR	SO1559	0.28	+0.3
1,635,643	-	phoR	SO1559	0.30	+0.1
1,635,674	-	phoR	SO1559	0.32	+0.2
1,635,810	+	phoR	SO1559	0.43	-0.7
1,635,846	+	phoR	SO1559	0.46	-0.7
1,636,021	+	phoR	SO1559	0.59	-0.0
1,636,021	+	phoR	SO1559	0.59	+0.0
1,636,021	+	phoR	SO1559	0.59	+0.0
1,636,021	+	phoR	SO1559	0.59	+0.2
1,636,029	-	phoR	SO1559	0.60	+0.5
1,636,105	+	phoR	SO1559	0.66	+0.3
1,636,138	-	phoR	SO1559	0.68	+0.1
1,636,138	-	phoR	SO1559	0.68	-1.8
1,636,155	-	phoR	SO1559	0.69	-1.3
1,636,210	+	phoR	SO1559	0.74	-0.2
1,636,210	+	phoR	SO1559	0.74	+0.3
1,636,218	-	phoR	SO1559	0.74	+0.5
1,636,218	-	phoR	SO1559	0.74	+0.2
1,636,218	-	phoR	SO1559	0.74	+0.2
1,636,261	+	phoR	SO1559	0.78	+0.3
1,636,309	-	phoR	SO1559	0.81	+0.4
1,636,331	+	phoR	SO1559	0.83	-0.8
1,636,331	+	phoR	SO1559	0.83	-0.8
1,636,338	+	phoR	SO1559	0.83	+0.5
1,636,427	+				-0.1
1,636,435	-				+0.5
1,636,449	+				+0.7
1,636,463	-				-0.4
1,636,505	+				+0.0
1,636,505	+				+0.1
1,636,536	-				-0.1
1,636,600	-				+1.7
1,636,726	+				+0.3
1,636,823	+				-0.7
1,636,823	+				+0.3
1,636,823	+				+0.1
1,636,831	-				+0.1
1,636,831	-				-0.1
1,636,836	-				+0.5
1,636,861	+				-0.2
1,636,911	-		SO1560	0.14	+0.4
1,636,977	-		SO1560	0.20	-1.2
1,636,977	-		SO1560	0.20	-1.4
1,637,070	+		SO1560	0.30	+0.3
1,637,227	-		SO1560	0.46	+0.3
1,637,273	-		SO1560	0.51	+0.9
1,637,381	-		SO1560	0.62	-0.1
1,637,388	-		SO1560	0.63	-0.0