Experiment: D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0649 and SO0650 are separated by 102 nucleotides SO0650 and SO0651 overlap by 1 nucleotides SO0651 and SO0652 overlap by 8 nucleotides SO0652 and SO0653 are separated by 65 nucleotides SO0653 and SO0654 are separated by 35 nucleotides
SO0649: SO0649 - hypothetical protein (NCBI ptt file), at 675,374 to 675,646
SO0649
SO0650: SO0650 - hypothetical protein (NCBI ptt file), at 675,749 to 675,979
SO0650
SO0651: SO0651 - conserved hypothetical protein (NCBI ptt file), at 675,979 to 676,584
SO0651
SO0652: SO0652 - prophage MuSo1, positive regulator of late transcription, putative (NCBI ptt file), at 676,577 to 677,032
SO0652
SO0653: SO0653 - hypothetical protein (NCBI ptt file), at 677,098 to 677,898
SO0653
SO0654: SO0654 - hypothetical protein (NCBI ptt file), at 677,934 to 678,491
SO0654
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.658 kb on - strand at 675.683 kb on + strand at 675.691 kb on - strand at 675.701 kb on + strand at 675.739 kb on - strand at 675.739 kb on - strand at 675.818 kb on + strand, within SO0650 at 675.818 kb on + strand, within SO0650 at 675.818 kb on + strand, within SO0650 at 675.818 kb on + strand, within SO0650 at 675.826 kb on - strand, within SO0650 at 675.826 kb on - strand, within SO0650 at 675.905 kb on + strand, within SO0650 at 675.916 kb on + strand, within SO0650 at 675.916 kb on + strand, within SO0650 at 675.916 kb on + strand, within SO0650 at 675.924 kb on - strand, within SO0650 at 676.016 kb on + strand at 676.023 kb on - strand at 676.024 kb on - strand at 676.087 kb on - strand, within SO0651 at 676.276 kb on + strand, within SO0651 at 676.276 kb on + strand, within SO0651 at 676.284 kb on - strand, within SO0651 at 676.284 kb on - strand, within SO0651 at 676.291 kb on + strand, within SO0651 at 676.298 kb on + strand, within SO0651 at 676.311 kb on + strand, within SO0651 at 676.319 kb on - strand, within SO0651 at 676.334 kb on + strand, within SO0651 at 676.354 kb on + strand, within SO0651 at 676.368 kb on + strand, within SO0651 at 676.419 kb on + strand, within SO0651 at 676.443 kb on - strand, within SO0651 at 676.550 kb on + strand at 676.550 kb on + strand at 676.558 kb on - strand at 676.558 kb on - strand at 676.560 kb on + strand at 676.560 kb on + strand at 676.568 kb on - strand at 676.568 kb on - strand at 676.568 kb on - strand at 676.568 kb on - strand at 676.641 kb on - strand, within SO0652 at 676.671 kb on - strand, within SO0652 at 676.694 kb on - strand, within SO0652 at 676.745 kb on + strand, within SO0652 at 676.761 kb on + strand, within SO0652 at 676.761 kb on + strand, within SO0652 at 676.769 kb on - strand, within SO0652 at 676.795 kb on + strand, within SO0652 at 676.800 kb on + strand, within SO0652 at 676.830 kb on + strand, within SO0652 at 676.832 kb on - strand, within SO0652 at 676.849 kb on + strand, within SO0652 at 676.855 kb on + strand, within SO0652 at 676.862 kb on + strand, within SO0652 at 676.862 kb on + strand, within SO0652 at 676.870 kb on + strand, within SO0652 at 676.870 kb on + strand, within SO0652 at 676.870 kb on + strand, within SO0652 at 676.875 kb on + strand, within SO0652 at 676.878 kb on - strand, within SO0652 at 676.909 kb on + strand, within SO0652 at 676.916 kb on - strand, within SO0652 at 676.918 kb on + strand, within SO0652 at 676.931 kb on - strand, within SO0652 at 676.944 kb on + strand, within SO0652 at 676.944 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.958 kb on - strand, within SO0652 at 676.958 kb on - strand, within SO0652 at 676.975 kb on + strand, within SO0652 at 676.979 kb on - strand, within SO0652 at 676.985 kb on + strand, within SO0652 at 676.987 kb on + strand at 676.987 kb on + strand at 676.993 kb on - strand at 676.995 kb on - strand at 677.020 kb on - strand at 677.026 kb on + strand at 677.026 kb on + strand at 677.034 kb on - strand at 677.034 kb on - strand at 677.042 kb on + strand at 677.044 kb on + strand at 677.050 kb on - strand at 677.050 kb on - strand at 677.131 kb on - strand at 677.196 kb on + strand, within SO0653 at 677.202 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.210 kb on - strand, within SO0653 at 677.210 kb on - strand, within SO0653 at 677.210 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.222 kb on + strand, within SO0653 at 677.228 kb on - strand, within SO0653 at 677.292 kb on + strand, within SO0653 at 677.297 kb on + strand, within SO0653 at 677.300 kb on - strand, within SO0653 at 677.305 kb on - strand, within SO0653 at 677.310 kb on + strand, within SO0653 at 677.310 kb on + strand, within SO0653 at 677.313 kb on - strand, within SO0653 at 677.315 kb on - strand, within SO0653 at 677.318 kb on - strand, within SO0653 at 677.318 kb on - strand, within SO0653 at 677.339 kb on - strand, within SO0653 at 677.419 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.436 kb on + strand, within SO0653 at 677.444 kb on - strand, within SO0653 at 677.457 kb on + strand, within SO0653 at 677.484 kb on + strand, within SO0653 at 677.486 kb on + strand, within SO0653 at 677.486 kb on + strand, within SO0653 at 677.507 kb on + strand, within SO0653 at 677.510 kb on - strand, within SO0653 at 677.511 kb on - strand, within SO0653 at 677.514 kb on + strand, within SO0653 at 677.515 kb on - strand, within SO0653 at 677.525 kb on - strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.537 kb on - strand, within SO0653 at 677.540 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.563 kb on + strand, within SO0653 at 677.566 kb on + strand, within SO0653 at 677.566 kb on + strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.569 kb on - strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.574 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.582 kb on - strand, within SO0653 at 677.589 kb on - strand, within SO0653 at 677.614 kb on - strand, within SO0653 at 677.615 kb on - strand, within SO0653 at 677.652 kb on + strand, within SO0653 at 677.755 kb on - strand, within SO0653 at 677.766 kb on - strand, within SO0653 at 677.794 kb on + strand, within SO0653 at 677.817 kb on + strand, within SO0653 at 677.823 kb on - strand at 677.831 kb on - strand at 677.842 kb on - strand at 677.850 kb on - strand at 677.861 kb on - strand at 677.862 kb on + strand at 677.862 kb on + strand at 677.862 kb on + strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.875 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.967 kb on + strand at 677.973 kb on + strand at 677.973 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.975 kb on - strand at 677.979 kb on + strand at 677.981 kb on + strand at 677.982 kb on - strand at 677.989 kb on + strand at 677.989 kb on - strand at 678.003 kb on - strand, within SO0654 at 678.016 kb on - strand, within SO0654 at 678.016 kb on - strand, within SO0654
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml remove 675,658 - +0.0 675,683 + +0.8 675,691 - -0.3 675,701 + -1.2 675,739 - +0.5 675,739 - +0.2 675,818 + SO0650 0.30 -0.9 675,818 + SO0650 0.30 +0.3 675,818 + SO0650 0.30 -1.3 675,818 + SO0650 0.30 +1.0 675,826 - SO0650 0.33 +0.3 675,826 - SO0650 0.33 +0.9 675,905 + SO0650 0.68 -0.3 675,916 + SO0650 0.72 -0.2 675,916 + SO0650 0.72 +0.4 675,916 + SO0650 0.72 +0.6 675,924 - SO0650 0.76 +0.2 676,016 + +0.8 676,023 - +1.9 676,024 - +0.4 676,087 - SO0651 0.18 +1.2 676,276 + SO0651 0.49 +0.4 676,276 + SO0651 0.49 +0.6 676,284 - SO0651 0.50 +0.2 676,284 - SO0651 0.50 -0.0 676,291 + SO0651 0.51 +0.6 676,298 + SO0651 0.53 -0.1 676,311 + SO0651 0.55 -0.7 676,319 - SO0651 0.56 -0.4 676,334 + SO0651 0.59 -0.9 676,354 + SO0651 0.62 +0.4 676,368 + SO0651 0.64 +0.2 676,419 + SO0651 0.73 +0.1 676,443 - SO0651 0.77 +1.2 676,550 + +1.0 676,550 + -0.0 676,558 - +0.5 676,558 - +0.5 676,560 + +0.4 676,560 + +1.1 676,568 - +0.3 676,568 - -0.3 676,568 - -0.1 676,568 - -0.2 676,641 - SO0652 0.14 +0.2 676,671 - SO0652 0.21 -2.0 676,694 - SO0652 0.26 +0.4 676,745 + SO0652 0.37 +0.5 676,761 + SO0652 0.40 +0.6 676,761 + SO0652 0.40 -0.0 676,769 - SO0652 0.42 +0.2 676,795 + SO0652 0.48 +0.3 676,800 + SO0652 0.49 +0.5 676,830 + SO0652 0.55 +0.3 676,832 - SO0652 0.56 +0.1 676,849 + SO0652 0.60 -0.3 676,855 + SO0652 0.61 +0.2 676,862 + SO0652 0.62 +0.3 676,862 + SO0652 0.62 +0.4 676,870 + SO0652 0.64 +0.1 676,870 + SO0652 0.64 +0.9 676,870 + SO0652 0.64 -0.1 676,875 + SO0652 0.65 -0.5 676,878 - SO0652 0.66 +0.1 676,909 + SO0652 0.73 +0.3 676,916 - SO0652 0.74 +0.1 676,918 + SO0652 0.75 +0.6 676,931 - SO0652 0.78 +0.4 676,944 + SO0652 0.80 +0.6 676,944 + SO0652 0.80 +0.3 676,950 + SO0652 0.82 +0.9 676,950 + SO0652 0.82 +0.8 676,950 + SO0652 0.82 +0.4 676,950 + SO0652 0.82 +0.4 676,950 + SO0652 0.82 +0.7 676,950 + SO0652 0.82 -0.1 676,952 - SO0652 0.82 +1.2 676,952 - SO0652 0.82 +1.0 676,952 - SO0652 0.82 +0.8 676,952 - SO0652 0.82 -1.1 676,958 - SO0652 0.84 +1.1 676,958 - SO0652 0.84 -0.3 676,975 + SO0652 0.87 +0.6 676,979 - SO0652 0.88 +0.8 676,985 + SO0652 0.89 -0.9 676,987 + +0.4 676,987 + -0.2 676,993 - -0.3 676,995 - -0.5 677,020 - +0.2 677,026 + +0.1 677,026 + -1.5 677,034 - +0.2 677,034 - +0.7 677,042 + +0.4 677,044 + -0.3 677,050 - +0.4 677,050 - +0.9 677,131 - +0.3 677,196 + SO0653 0.12 +0.8 677,202 + SO0653 0.13 +0.1 677,203 + SO0653 0.13 +0.9 677,203 + SO0653 0.13 +0.2 677,203 + SO0653 0.13 -0.7 677,203 + SO0653 0.13 +0.3 677,203 + SO0653 0.13 -0.2 677,203 + SO0653 0.13 -0.1 677,203 + SO0653 0.13 -0.1 677,203 + SO0653 0.13 -0.0 677,203 + SO0653 0.13 +0.4 677,203 + SO0653 0.13 -0.5 677,203 + SO0653 0.13 +1.5 677,203 + SO0653 0.13 +0.8 677,203 + SO0653 0.13 +0.1 677,210 - SO0653 0.14 +0.2 677,210 - SO0653 0.14 +0.3 677,210 - SO0653 0.14 +0.1 677,211 - SO0653 0.14 +0.1 677,211 - SO0653 0.14 +0.6 677,211 - SO0653 0.14 +0.5 677,211 - SO0653 0.14 +1.0 677,211 - SO0653 0.14 -0.0 677,211 - SO0653 0.14 -0.8 677,211 - SO0653 0.14 -0.3 677,211 - SO0653 0.14 +0.3 677,211 - SO0653 0.14 -0.1 677,211 - SO0653 0.14 -0.3 677,211 - SO0653 0.14 +0.3 677,211 - SO0653 0.14 -0.0 677,222 + SO0653 0.15 +0.2 677,228 - SO0653 0.16 +0.1 677,292 + SO0653 0.24 -0.1 677,297 + SO0653 0.25 +0.3 677,300 - SO0653 0.25 -0.5 677,305 - SO0653 0.26 +0.9 677,310 + SO0653 0.26 -0.1 677,310 + SO0653 0.26 +0.5 677,313 - SO0653 0.27 -0.5 677,315 - SO0653 0.27 -0.4 677,318 - SO0653 0.27 +0.1 677,318 - SO0653 0.27 -1.1 677,339 - SO0653 0.30 +0.4 677,419 - SO0653 0.40 -1.6 677,429 - SO0653 0.41 +0.2 677,429 - SO0653 0.41 -0.1 677,429 - SO0653 0.41 +0.1 677,429 - SO0653 0.41 -1.1 677,436 + SO0653 0.42 -0.3 677,444 - SO0653 0.43 -0.1 677,457 + SO0653 0.45 -0.6 677,484 + SO0653 0.48 +0.8 677,486 + SO0653 0.48 -0.4 677,486 + SO0653 0.48 -0.2 677,507 + SO0653 0.51 -0.4 677,510 - SO0653 0.51 -0.6 677,511 - SO0653 0.52 +0.3 677,514 + SO0653 0.52 +0.3 677,515 - SO0653 0.52 +0.0 677,525 - SO0653 0.53 -0.3 677,529 + SO0653 0.54 +0.6 677,529 + SO0653 0.54 +0.2 677,529 + SO0653 0.54 +0.0 677,529 + SO0653 0.54 -1.1 677,537 - SO0653 0.55 +0.2 677,540 + SO0653 0.55 +0.2 677,558 + SO0653 0.57 -0.4 677,558 + SO0653 0.57 +0.1 677,558 + SO0653 0.57 +0.0 677,558 + SO0653 0.57 +0.4 677,563 + SO0653 0.58 -0.2 677,566 + SO0653 0.58 +0.1 677,566 + SO0653 0.58 +0.2 677,566 - SO0653 0.58 +0.3 677,566 - SO0653 0.58 -0.1 677,566 - SO0653 0.58 +0.7 677,569 - SO0653 0.59 -0.3 677,573 + SO0653 0.59 -0.3 677,573 + SO0653 0.59 -0.0 677,573 + SO0653 0.59 -0.1 677,573 + SO0653 0.59 -0.0 677,573 + SO0653 0.59 -0.2 677,573 + SO0653 0.59 -0.4 677,573 + SO0653 0.59 +0.4 677,573 + SO0653 0.59 +0.1 677,573 + SO0653 0.59 +0.0 677,573 + SO0653 0.59 +0.7 677,573 + SO0653 0.59 -0.2 677,573 + SO0653 0.59 +0.6 677,574 - SO0653 0.59 +0.1 677,581 - SO0653 0.60 +0.4 677,581 - SO0653 0.60 +0.4 677,581 - SO0653 0.60 +0.5 677,581 - SO0653 0.60 +0.6 677,581 - SO0653 0.60 -0.1 677,581 - SO0653 0.60 -0.2 677,581 - SO0653 0.60 +1.8 677,581 - SO0653 0.60 +0.6 677,581 - SO0653 0.60 +0.4 677,582 - SO0653 0.60 -0.3 677,589 - SO0653 0.61 -0.1 677,614 - SO0653 0.64 +1.0 677,615 - SO0653 0.65 +0.2 677,652 + SO0653 0.69 +0.6 677,755 - SO0653 0.82 +0.7 677,766 - SO0653 0.83 -0.1 677,794 + SO0653 0.87 +0.2 677,817 + SO0653 0.90 +0.4 677,823 - +0.1 677,831 - +0.3 677,842 - -0.9 677,850 - -0.0 677,861 - +0.6 677,862 + +0.7 677,862 + +0.1 677,862 + +0.4 677,870 - -0.3 677,870 - +0.4 677,870 - +0.4 677,870 - -0.0 677,870 - -0.5 677,872 + +0.2 677,872 + -1.5 677,872 + +1.0 677,872 + -2.1 677,872 + +0.1 677,872 + +1.0 677,872 + +0.2 677,872 + +0.3 677,872 + -0.4 677,872 + -0.1 677,872 + -0.4 677,872 + +0.1 677,872 + +0.1 677,872 + +0.3 677,875 - +0.3 677,880 - +0.1 677,880 - +0.1 677,880 - -0.2 677,880 - +0.3 677,880 - +0.5 677,880 - -0.2 677,880 - +0.5 677,880 - +0.6 677,880 - -0.6 677,880 - -0.0 677,880 - -0.6 677,880 - +0.9 677,967 + -0.5 677,973 + +0.1 677,973 + +0.3 677,974 + -0.1 677,974 + +0.8 677,974 + -0.6 677,974 + +0.9 677,975 - -0.0 677,979 + +0.4 677,981 + -0.8 677,982 - -0.4 677,989 + +1.4 677,989 - +0.0 678,003 - SO0654 0.12 +0.2 678,016 - SO0654 0.15 +0.2 678,016 - SO0654 0.15 +0.6
Or see this region's nucleotide sequence