Strain Fitness in Shewanella amazonensis SB2B around Sama_3377

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
4,005,194	+		Sama_3376	0.13	-1.1
4,005,194	+		Sama_3376	0.13	-0.5
4,005,194	+		Sama_3376	0.13	+0.3
4,005,195	-		Sama_3376	0.13	-0.8
4,005,346	+		Sama_3376	0.30	-0.8
4,005,346	+		Sama_3376	0.30	+0.6
4,005,346	+		Sama_3376	0.30	+0.1
4,005,346	+		Sama_3376	0.30	-2.2
4,005,346	+		Sama_3376	0.30	+1.1
4,005,346	+		Sama_3376	0.30	-0.5
4,005,347	-		Sama_3376	0.30	+1.8
4,005,347	-		Sama_3376	0.30	+2.1
4,005,347	-		Sama_3376	0.30	-0.8
4,005,347	-		Sama_3376	0.30	-1.9
4,005,347	-		Sama_3376	0.30	-0.7
4,005,347	-		Sama_3376	0.30	-1.0
4,005,363	+		Sama_3376	0.32	+1.4
4,005,364	-		Sama_3376	0.32	-0.5
4,005,378	+		Sama_3376	0.34	-1.7
4,005,378	+		Sama_3376	0.34	-0.7
4,005,378	+		Sama_3376	0.34	-0.8
4,005,378	+		Sama_3376	0.34	-1.4
4,005,378	+		Sama_3376	0.34	+0.0
4,005,379	-		Sama_3376	0.34	+1.1
4,005,379	-		Sama_3376	0.34	-0.1
4,005,379	-		Sama_3376	0.34	+0.2
4,005,379	-		Sama_3376	0.34	+1.0
4,005,379	-		Sama_3376	0.34	-0.5
4,005,379	-		Sama_3376	0.34	-1.4
4,005,379	-		Sama_3376	0.34	-0.8
4,005,379	-		Sama_3376	0.34	-0.5
4,005,431	-		Sama_3376	0.40	-0.5
4,005,505	+		Sama_3376	0.48	-0.6
4,005,506	-		Sama_3376	0.48	-0.8
4,005,506	-		Sama_3376	0.48	-1.2
4,005,512	-		Sama_3376	0.49	-0.0
4,005,602	+		Sama_3376	0.59	-0.4
4,005,602	+		Sama_3376	0.59	-0.8
4,005,602	+		Sama_3376	0.59	+0.5
4,005,603	-		Sama_3376	0.59	-0.0
4,005,603	-		Sama_3376	0.59	-0.8
4,005,603	-		Sama_3376	0.59	-1.9
4,005,603	-		Sama_3376	0.59	-0.7
4,005,603	-		Sama_3376	0.59	-0.0
4,005,607	-		Sama_3376	0.60	-2.8
4,005,620	+		Sama_3376	0.61	-1.2
4,005,629	+		Sama_3376	0.62	-3.1
4,005,630	-		Sama_3376	0.62	+0.4
4,005,638	+		Sama_3376	0.63	+0.9
4,005,638	+		Sama_3376	0.63	+0.7
4,005,638	+		Sama_3376	0.63	-1.2
4,005,639	-		Sama_3376	0.63	+0.4
4,005,639	-		Sama_3376	0.63	-0.8
4,005,639	-		Sama_3376	0.63	-1.5
4,005,647	+		Sama_3376	0.64	-0.9
4,005,647	+		Sama_3376	0.64	-0.8
4,005,647	+		Sama_3376	0.64	-0.2
4,005,647	+		Sama_3376	0.64	+0.2
4,005,647	+		Sama_3376	0.64	+0.2
4,005,648	-		Sama_3376	0.64	-0.0
4,005,648	-		Sama_3376	0.64	+1.1
4,005,648	-		Sama_3376	0.64	+0.3
4,005,648	-		Sama_3376	0.64	-0.2
4,005,648	-		Sama_3376	0.64	-1.3
4,005,660	+		Sama_3376	0.66	-0.2
4,005,660	+		Sama_3376	0.66	-1.2
4,005,660	+		Sama_3376	0.66	+0.4
4,005,661	-		Sama_3376	0.66	-0.8
4,005,661	-		Sama_3376	0.66	-1.1
4,005,687	-		Sama_3376	0.69	-0.6
4,005,739	+		Sama_3376	0.75	-2.5
4,005,739	+		Sama_3376	0.75	-0.9
4,005,739	+		Sama_3376	0.75	-2.9
4,005,740	-		Sama_3376	0.75	-0.2
4,005,740	-		Sama_3376	0.75	-1.2
4,005,740	-		Sama_3376	0.75	-0.2
4,005,813	+		Sama_3376	0.83	-0.3
4,005,813	+		Sama_3376	0.83	+1.1
4,005,813	+		Sama_3376	0.83	+0.1
4,005,813	+		Sama_3376	0.83	-1.0
4,005,813	+		Sama_3376	0.83	-0.9
4,005,813	+		Sama_3376	0.83	-0.7
4,005,813	+		Sama_3376	0.83	-1.9
4,005,813	+		Sama_3376	0.83	-0.1
4,005,814	-		Sama_3376	0.83	-1.2
4,005,814	-		Sama_3376	0.83	+0.1
4,005,814	-		Sama_3376	0.83	-1.6
4,005,814	-		Sama_3376	0.83	-0.5
4,005,814	-		Sama_3376	0.83	-0.2
4,005,814	-		Sama_3376	0.83	-0.2
4,005,839	+		Sama_3376	0.86	-0.6
4,005,840	-		Sama_3376	0.86	+0.7
4,005,840	-		Sama_3376	0.86	+0.1
4,005,840	-		Sama_3376	0.86	-1.2
4,005,894	+				-0.7
4,005,894	+				-0.2
4,005,894	+				+1.0
4,005,894	+				-0.2
4,005,895	-				+0.6
4,005,895	-				+0.2
4,005,963	-				+0.3
4,005,978	-				+0.1
4,006,023	-				-0.7
4,006,040	+				+0.6
4,006,040	+				-1.0
4,006,041	-				-1.4
4,006,041	-				-1.5
4,006,045	+				-0.2
4,006,060	-				-1.5
4,006,069	+				+0.4
4,006,069	-				-2.0
4,006,069	+				-0.0
4,006,069	+				+0.1
4,006,070	-				-0.3
4,006,070	-				-3.1
4,006,075	+				-0.7
4,006,076	-				+0.1
4,006,099	+				-1.1
4,006,100	-				-1.3
4,006,100	-				+1.0
4,006,134	+				-0.2
4,006,134	+				-0.1
4,006,135	-				-0.4
4,006,135	-				-0.6
4,006,135	-				-1.7
4,006,139	+				-0.8
4,006,139	+				+0.5
4,006,139	+				+1.4
4,006,139	+				+0.9
4,006,139	+				-1.2
4,006,139	+				-0.3
4,006,139	+				+0.5
4,006,140	-				-0.4
4,006,140	-				-1.0
4,006,180	+				-0.9
4,006,181	-				-0.4
4,006,222	-				-1.1
4,006,222	-				-2.0
4,006,222	-				-2.0
4,006,235	+				+0.4
4,006,235	+				-2.0
4,006,235	+				+0.1
4,006,235	+				-1.3
4,006,236	-				+0.2
4,006,236	-				+1.0
4,006,236	-				-2.2
4,006,236	-				-0.3
4,006,236	-				-1.0
4,006,432	+		Sama_3377	0.35	-0.9
4,006,432	+		Sama_3377	0.35	-0.8
4,006,432	+		Sama_3377	0.35	+1.2
4,006,433	-		Sama_3377	0.35	+0.3
4,006,433	-		Sama_3377	0.35	+0.1
4,006,433	-		Sama_3377	0.35	-1.2
4,006,433	-		Sama_3377	0.35	+1.0
4,006,499	+		Sama_3377	0.45	+1.2
4,006,499	+		Sama_3377	0.45	+0.7
4,006,499	+		Sama_3377	0.45	-1.1
4,006,500	-		Sama_3377	0.45	-0.2
4,006,500	-		Sama_3377	0.45	-0.5
4,006,500	-		Sama_3377	0.45	-0.4
4,006,525	+		Sama_3377	0.48	+1.3
4,006,525	+		Sama_3377	0.48	-1.0
4,006,525	+		Sama_3377	0.48	-0.5
4,006,525	+		Sama_3377	0.48	-0.3
4,006,526	-		Sama_3377	0.49	-1.9
4,006,526	-		Sama_3377	0.49	+0.3
4,006,526	-		Sama_3377	0.49	-1.0
4,006,526	-		Sama_3377	0.49	+0.2
4,006,526	-		Sama_3377	0.49	+0.5
4,006,526	-		Sama_3377	0.49	+0.6
4,006,529	+		Sama_3377	0.49	+0.6
4,006,529	+		Sama_3377	0.49	+1.8
4,006,529	+		Sama_3377	0.49	+0.7
4,006,530	-		Sama_3377	0.49	+0.4
4,006,530	-		Sama_3377	0.49	-1.4
4,006,602	+		Sama_3377	0.60	-0.5
4,006,602	+		Sama_3377	0.60	+0.2
4,006,602	+		Sama_3377	0.60	-0.1
4,006,639	+		Sama_3377	0.65	-1.7
4,006,639	+		Sama_3377	0.65	-0.4
4,006,640	-		Sama_3377	0.65	-0.6
4,006,640	-		Sama_3377	0.65	+0.5
4,006,671	+		Sama_3377	0.70	+0.7
4,006,671	+		Sama_3377	0.70	+0.2
4,006,671	+		Sama_3377	0.70	-0.2
4,006,672	-		Sama_3377	0.70	-0.9
4,006,672	-		Sama_3377	0.70	-0.2
4,006,672	-		Sama_3377	0.70	-0.4
4,006,672	-		Sama_3377	0.70	-1.9
4,006,672	-		Sama_3377	0.70	-1.0
4,006,673	+		Sama_3377	0.70	+1.2
4,006,680	+		Sama_3377	0.71	+0.5
4,006,680	+		Sama_3377	0.71	-0.4
4,006,681	-		Sama_3377	0.71	+0.4
4,006,681	-		Sama_3377	0.71	-0.1
4,006,791	+		Sama_3377	0.87	+0.2
4,006,791	+		Sama_3377	0.87	+2.8
4,006,791	+		Sama_3377	0.87	-1.0
4,006,791	+		Sama_3377	0.87	+0.8
4,006,792	-		Sama_3377	0.87	+1.4
4,006,792	-		Sama_3377	0.87	-1.6
4,006,936	+				-0.4
4,006,936	+				+0.5
4,006,936	+				-2.5
4,006,936	+				+1.3
4,006,936	+				+0.6
4,006,937	-				+0.1
4,006,937	-				-0.4
4,006,937	-				-0.0
4,006,937	-				+0.6
4,006,937	-				+1.8
4,006,937	-				-0.2
4,006,937	-				+0.3
4,006,937	-				-0.7
4,006,969	+		Sama_3378	0.12	+0.3
4,006,969	+		Sama_3378	0.12	-1.1
4,006,969	+		Sama_3378	0.12	+0.0
4,006,969	+		Sama_3378	0.12	+1.1
4,006,969	+		Sama_3378	0.12	-0.6
4,006,969	+		Sama_3378	0.12	-0.3
4,006,969	+		Sama_3378	0.12	-0.8
4,006,969	+		Sama_3378	0.12	-0.1
4,006,969	+		Sama_3378	0.12	-0.0
4,006,969	+		Sama_3378	0.12	-0.1
4,006,969	+		Sama_3378	0.12	-0.0
4,006,969	+		Sama_3378	0.12	-0.6
4,006,969	+		Sama_3378	0.12	+0.3
4,006,970	-		Sama_3378	0.12	+0.2
4,006,970	-		Sama_3378	0.12	-1.0
4,006,970	-		Sama_3378	0.12	+1.4
4,006,970	-		Sama_3378	0.12	-0.2
4,006,970	-		Sama_3378	0.12	-1.0
4,006,970	-		Sama_3378	0.12	+0.2
4,006,970	-		Sama_3378	0.12	+1.8
4,006,970	-		Sama_3378	0.12	+0.9
4,006,997	+		Sama_3378	0.15	-0.6
4,006,997	+		Sama_3378	0.15	+0.6
4,007,010	+		Sama_3378	0.17	-0.4
4,007,011	-		Sama_3378	0.17	-0.5
4,007,011	-		Sama_3378	0.17	+0.3
4,007,029	+		Sama_3378	0.19	+0.4
4,007,029	+		Sama_3378	0.19	-1.4
4,007,029	+		Sama_3378	0.19	-1.4
4,007,029	+		Sama_3378	0.19	+1.0
4,007,030	-		Sama_3378	0.19	-1.2
4,007,225	+		Sama_3378	0.43	-0.2
4,007,226	-		Sama_3378	0.43	-0.2
4,007,226	-		Sama_3378	0.43	+0.4
4,007,226	-		Sama_3378	0.43	-0.5
4,007,226	-		Sama_3378	0.43	+0.1
4,007,250	+		Sama_3378	0.46	+1.5
4,007,251	-		Sama_3378	0.46	-2.1
4,007,256	-		Sama_3378	0.47	+0.2
4,007,256	-		Sama_3378	0.47	+1.0
4,007,256	-		Sama_3378	0.47	+0.3
4,007,283	+		Sama_3378	0.50	+0.3
4,007,283	+		Sama_3378	0.50	-0.0
4,007,283	+		Sama_3378	0.50	+0.6
4,007,283	+		Sama_3378	0.50	-0.0
4,007,284	-		Sama_3378	0.50	-0.5
4,007,311	+		Sama_3378	0.53	-1.0
4,007,311	+		Sama_3378	0.53	+0.0
4,007,311	+		Sama_3378	0.53	+0.9
4,007,311	+		Sama_3378	0.53	+0.2
4,007,311	+		Sama_3378	0.53	-1.4
4,007,311	+		Sama_3378	0.53	+0.8
4,007,312	-		Sama_3378	0.53	+0.2
4,007,312	-		Sama_3378	0.53	+0.2
4,007,312	-		Sama_3378	0.53	+0.3
4,007,312	-		Sama_3378	0.53	-0.5
4,007,312	-		Sama_3378	0.53	+0.6
4,007,312	-		Sama_3378	0.53	-1.1
4,007,312	-		Sama_3378	0.53	+1.3
4,007,313	+		Sama_3378	0.54	+0.8
4,007,313	+		Sama_3378	0.54	+0.8
4,007,313	+		Sama_3378	0.54	+0.4
4,007,314	-		Sama_3378	0.54	-0.2
4,007,314	-		Sama_3378	0.54	+1.1
4,007,360	+		Sama_3378	0.59	+0.5
4,007,360	+		Sama_3378	0.59	-0.8
4,007,360	+		Sama_3378	0.59	+1.1
4,007,361	-		Sama_3378	0.59	-0.3
4,007,374	-		Sama_3378	0.61	+0.8
4,007,385	+		Sama_3378	0.62	-0.2
4,007,385	+		Sama_3378	0.62	+0.5
4,007,385	+		Sama_3378	0.62	+0.8
4,007,385	+		Sama_3378	0.62	+0.6
4,007,386	-		Sama_3378	0.62	+0.2
4,007,386	-		Sama_3378	0.62	-0.2
4,007,386	-		Sama_3378	0.62	-0.4
4,007,426	+		Sama_3378	0.67	-1.3
4,007,426	+		Sama_3378	0.67	-0.1
4,007,426	+		Sama_3378	0.67	-0.7
4,007,426	+		Sama_3378	0.67	-0.3
4,007,426	+		Sama_3378	0.67	-0.7
4,007,480	+		Sama_3378	0.74	-0.0
4,007,480	+		Sama_3378	0.74	-0.7
4,007,480	+		Sama_3378	0.74	+0.4
4,007,480	+		Sama_3378	0.74	+0.0
4,007,480	+		Sama_3378	0.74	-0.4
4,007,480	+		Sama_3378	0.74	+1.0
4,007,480	+		Sama_3378	0.74	+0.5
4,007,480	+		Sama_3378	0.74	+1.6
4,007,480	+		Sama_3378	0.74	-0.6
4,007,481	-		Sama_3378	0.74	+0.2
4,007,481	-		Sama_3378	0.74	+0.9
4,007,481	-		Sama_3378	0.74	-1.2
4,007,481	-		Sama_3378	0.74	-1.3
4,007,481	-		Sama_3378	0.74	-0.5
4,007,481	-		Sama_3378	0.74	+1.4
4,007,481	-		Sama_3378	0.74	-0.4
4,007,571	-		Sama_3378	0.85	-0.8
4,007,602	+		Sama_3378	0.88	+0.1
4,007,602	+		Sama_3378	0.88	-0.3
4,007,602	+		Sama_3378	0.88	+0.4
4,007,603	-		Sama_3378	0.89	-0.2
4,007,603	-		Sama_3378	0.89	-0.1
4,007,668	+				+1.8
4,007,670	+				+0.3
4,007,687	+				-1.2
4,007,701	+				+0.9
4,007,701	+				-0.6
4,007,701	+				+0.2
4,007,701	+				+0.9
4,007,702	-				-0.8
4,007,702	-				-1.3
4,007,702	-				+0.2
4,007,702	-				+0.6
4,007,767	+		Sama_3379	0.28	+0.2
4,007,768	-		Sama_3379	0.28	-2.0
4,007,840	+		Sama_3379	0.56	-0.3
4,007,843	+		Sama_3379	0.57	-0.5
4,007,844	-		Sama_3379	0.57	+0.4
4,007,844	-		Sama_3379	0.57	-0.7
4,007,860	+		Sama_3379	0.64	+0.3
4,007,860	+		Sama_3379	0.64	+0.1
4,007,861	-		Sama_3379	0.64	+2.4
4,007,861	-		Sama_3379	0.64	+0.4
4,007,861	-		Sama_3379	0.64	+0.4