Strain Fitness in Shewanella amazonensis SB2B around Sama_3294

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,913,464	+		Sama_3293	0.18	-1.4
3,913,465	-		Sama_3293	0.18	+0.7
3,913,465	-		Sama_3293	0.18	-0.6
3,913,465	-		Sama_3293	0.18	+0.5
3,913,465	-		Sama_3293	0.18	-0.2
3,913,465	-		Sama_3293	0.18	-1.8
3,913,554	+		Sama_3293	0.29	-0.2
3,913,555	-		Sama_3293	0.29	+0.3
3,913,616	+		Sama_3293	0.37	+0.6
3,913,616	+		Sama_3293	0.37	-1.1
3,913,616	+		Sama_3293	0.37	+0.6
3,913,616	+		Sama_3293	0.37	-0.1
3,913,617	-		Sama_3293	0.37	-0.2
3,913,617	-		Sama_3293	0.37	+0.3
3,913,617	-		Sama_3293	0.37	-0.3
3,913,617	-		Sama_3293	0.37	+1.2
3,913,617	-		Sama_3293	0.37	-1.4
3,913,617	-		Sama_3293	0.37	-1.2
3,913,617	-		Sama_3293	0.37	-0.8
3,913,617	-		Sama_3293	0.37	-0.4
3,913,617	-		Sama_3293	0.37	-0.1
3,913,617	-		Sama_3293	0.37	-0.0
3,913,672	+		Sama_3293	0.45	+1.4
3,913,672	+		Sama_3293	0.45	-0.8
3,913,673	-		Sama_3293	0.45	+0.8
3,913,746	-		Sama_3293	0.54	+0.4
3,913,746	-		Sama_3293	0.54	+0.3
3,913,746	-		Sama_3293	0.54	-1.4
3,913,838	+		Sama_3293	0.66	+1.2
3,913,839	-		Sama_3293	0.66	-0.2
3,913,839	-		Sama_3293	0.66	+0.9
3,913,856	+		Sama_3293	0.68	-0.4
3,913,856	+		Sama_3293	0.68	+0.2
3,913,856	+		Sama_3293	0.68	-0.9
3,913,856	+		Sama_3293	0.68	-0.4
3,913,856	+		Sama_3293	0.68	-0.1
3,913,856	+		Sama_3293	0.68	-1.3
3,913,856	+		Sama_3293	0.68	-1.6
3,913,857	-		Sama_3293	0.69	-0.5
3,913,857	-		Sama_3293	0.69	+0.5
3,913,857	-		Sama_3293	0.69	+0.8
3,913,862	+		Sama_3293	0.69	-0.0
3,913,863	-		Sama_3293	0.69	-2.0
3,913,863	-		Sama_3293	0.69	-0.5
3,913,917	+		Sama_3293	0.76	+1.0
3,913,917	+		Sama_3293	0.76	+0.0
3,913,918	-		Sama_3293	0.77	-0.9
3,913,918	-		Sama_3293	0.77	+0.8
3,913,976	-		Sama_3293	0.84	+0.1
3,914,012	-		Sama_3293	0.89	+0.5
3,914,056	+				-1.6
3,914,057	-				+0.4
3,914,057	-				-0.9
3,914,069	-				+0.1
3,914,069	-				-1.7
3,914,079	+				+0.1
3,914,080	-				-1.6
3,914,080	-				-1.1
3,914,159	+				-1.0
3,914,159	+				-1.0
3,914,159	+				-1.7
3,914,160	-				-0.9
3,914,164	-				+0.9
3,914,164	-				-0.4
3,914,177	-				+0.2
3,914,177	-				+0.2
3,914,218	+	prpB	Sama_3294	0.14	+0.4
3,914,218	+	prpB	Sama_3294	0.14	-1.2
3,914,218	+	prpB	Sama_3294	0.14	-0.2
3,914,219	-	prpB	Sama_3294	0.14	+0.2
3,914,219	-	prpB	Sama_3294	0.14	+0.7
3,914,219	-	prpB	Sama_3294	0.14	+0.0
3,914,251	+	prpB	Sama_3294	0.18	-0.8
3,914,251	+	prpB	Sama_3294	0.18	-0.8
3,914,251	+	prpB	Sama_3294	0.18	-4.8
3,914,251	+	prpB	Sama_3294	0.18	-0.6
3,914,252	-	prpB	Sama_3294	0.18	+0.2
3,914,252	-	prpB	Sama_3294	0.18	+0.3
3,914,252	-	prpB	Sama_3294	0.18	-0.6
3,914,252	-	prpB	Sama_3294	0.18	+0.5
3,914,252	-	prpB	Sama_3294	0.18	+0.5
3,914,348	+	prpB	Sama_3294	0.29	+0.2
3,914,428	-	prpB	Sama_3294	0.38	-0.2
3,914,428	-	prpB	Sama_3294	0.38	+0.3
3,914,428	-	prpB	Sama_3294	0.38	+1.2
3,914,428	-	prpB	Sama_3294	0.38	+0.5
3,914,428	-	prpB	Sama_3294	0.38	-0.9
3,914,599	-	prpB	Sama_3294	0.57	-0.3
3,914,601	-	prpB	Sama_3294	0.57	+1.1
3,914,601	-	prpB	Sama_3294	0.57	-0.1
3,914,601	-	prpB	Sama_3294	0.57	+0.4
3,914,617	+	prpB	Sama_3294	0.59	-1.6
3,914,617	+	prpB	Sama_3294	0.59	-1.9
3,914,617	+	prpB	Sama_3294	0.59	-1.8
3,914,618	-	prpB	Sama_3294	0.59	-0.1
3,914,618	-	prpB	Sama_3294	0.59	-0.6
3,914,675	-	prpB	Sama_3294	0.66	+0.8
3,914,719	-	prpB	Sama_3294	0.71	+0.0
3,914,719	-	prpB	Sama_3294	0.71	+1.4
3,914,719	-	prpB	Sama_3294	0.71	+1.4
3,914,765	-	prpB	Sama_3294	0.76	+0.3
3,914,792	-	prpB	Sama_3294	0.79	-0.6
3,914,792	-	prpB	Sama_3294	0.79	+0.4
3,914,833	-	prpB	Sama_3294	0.83	-0.0
3,914,909	-				+0.0
3,914,923	+				+0.2
3,914,923	+				-2.1
3,914,924	-				-0.6
3,914,924	-				-0.9
3,914,924	-				+0.3
3,914,924	-				-1.0
3,914,924	-				-1.7
3,914,924	-				+0.5
3,914,924	-				-1.1
3,914,924	-				+0.4
3,914,977	+				+0.2
3,914,977	+				+0.3
3,914,977	+				-1.2
3,914,977	+				-1.8
3,914,977	+				-0.0
3,914,977	+				+0.7
3,914,977	+				+0.8
3,914,977	+				+1.5
3,914,978	-				+0.6
3,914,978	-				+0.9
3,914,978	-				+0.6
3,914,978	-				-0.4
3,914,999	+				-0.7
3,915,000	-				+0.4
3,915,000	-				-0.8
3,915,000	-				-0.7
3,915,000	-				-0.6
3,915,000	-				-0.4
3,915,032	+				-0.4
3,915,032	+				-0.8
3,915,032	+				+1.1
3,915,033	-				+0.4
3,915,033	-				-0.5
3,915,033	-				+0.8
3,915,046	+				-0.2
3,915,046	+				+0.4
3,915,046	+				-1.4
3,915,046	+				-0.8
3,915,047	-				-0.6
3,915,047	-				-0.4
3,915,047	-				-0.6
3,915,087	+				-0.1
3,915,087	+				+0.5
3,915,087	+				+0.6
3,915,088	-				+0.6
3,915,088	-				-0.5
3,915,088	-				+0.6
3,915,094	+				-0.5
3,915,094	+				-0.2
3,915,095	-				+1.3
3,915,186	+				+0.2
3,915,248	+				-0.4
3,915,248	+				+1.4
3,915,249	-				+0.8
3,915,252	+				-0.1
3,915,252	+				-0.8
3,915,252	+				-0.9
3,915,252	+				+0.0
3,915,252	+				-0.4
3,915,252	+				-1.0
3,915,252	+				+1.8
3,915,252	+				+1.4
3,915,252	+				+0.5
3,915,252	+				+0.1
3,915,253	-				+0.3
3,915,253	-				-0.6
3,915,253	-				+0.2
3,915,274	+				-0.7
3,915,274	+				+0.5
3,915,274	+				-0.2
3,915,275	-				-0.6
3,915,275	-				+0.9
3,915,275	-				-0.4
3,915,275	-				-2.2
3,915,283	+		Sama_3295	0.10	-0.2
3,915,283	+		Sama_3295	0.10	+0.4
3,915,284	-		Sama_3295	0.10	-0.3
3,915,290	+		Sama_3295	0.11	-1.0
3,915,290	+		Sama_3295	0.11	+0.2
3,915,379	+		Sama_3295	0.18	-0.6
3,915,379	+		Sama_3295	0.18	-1.2
3,915,380	-		Sama_3295	0.19	-0.9
3,915,380	-		Sama_3295	0.19	-0.7
3,915,380	-		Sama_3295	0.19	-1.3
3,915,380	-		Sama_3295	0.19	-0.0
3,915,380	-		Sama_3295	0.19	-1.0
3,915,489	+		Sama_3295	0.28	+0.4
3,915,489	+		Sama_3295	0.28	-1.6
3,915,489	+		Sama_3295	0.28	-2.9
3,915,490	-		Sama_3295	0.28	-0.6
3,915,490	-		Sama_3295	0.28	+1.1
3,915,490	-		Sama_3295	0.28	+0.2
3,915,490	-		Sama_3295	0.28	+1.1
3,915,490	-		Sama_3295	0.28	-1.4
3,915,490	-		Sama_3295	0.28	+0.7
3,915,490	-		Sama_3295	0.28	-0.0
3,915,490	-		Sama_3295	0.28	-0.1
3,915,490	-		Sama_3295	0.28	+1.3
3,915,539	+		Sama_3295	0.33	-1.6
3,915,539	+		Sama_3295	0.33	+0.1
3,915,539	+		Sama_3295	0.33	-0.2
3,915,539	+		Sama_3295	0.33	-1.6
3,915,539	+		Sama_3295	0.33	+0.0
3,915,540	-		Sama_3295	0.33	-0.5
3,915,540	-		Sama_3295	0.33	+1.3
3,915,540	-		Sama_3295	0.33	+1.1
3,915,540	-		Sama_3295	0.33	+0.8
3,915,540	-		Sama_3295	0.33	-0.8
3,915,580	+		Sama_3295	0.36	-0.2
3,915,581	-		Sama_3295	0.36	-0.2
3,915,587	-		Sama_3295	0.37	+0.8
3,915,710	+		Sama_3295	0.48	-1.6
3,915,710	+		Sama_3295	0.48	+0.4
3,915,710	+		Sama_3295	0.48	+0.5
3,915,711	-		Sama_3295	0.48	-0.7
3,915,711	-		Sama_3295	0.48	-0.6
3,915,711	-		Sama_3295	0.48	-1.0
3,915,711	-		Sama_3295	0.48	+0.1
3,915,711	-		Sama_3295	0.48	-0.6
3,915,711	-		Sama_3295	0.48	-0.1
3,915,711	-		Sama_3295	0.48	+0.3
3,915,724	+		Sama_3295	0.49	+1.0
3,915,725	-		Sama_3295	0.49	+0.3
3,915,756	+		Sama_3295	0.52	-0.4
3,915,757	-		Sama_3295	0.52	-0.7
3,915,757	-		Sama_3295	0.52	+0.0
3,915,870	+		Sama_3295	0.62	+0.4
3,915,871	-		Sama_3295	0.62	+0.2
3,915,908	+		Sama_3295	0.65	+1.8
3,915,908	+		Sama_3295	0.65	+0.3
3,915,908	+		Sama_3295	0.65	-0.1
3,915,908	+		Sama_3295	0.65	+0.1
3,915,909	-		Sama_3295	0.65	+0.4
3,915,965	-		Sama_3295	0.70	+1.4