Strain Fitness in Shewanella amazonensis SB2B around Sama_3120

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,699,063	+				+0.5
3,699,063	+				-0.0
3,699,063	+				+0.1
3,699,063	+				-0.3
3,699,063	+				+0.6
3,699,063	+				+1.5
3,699,063	+				-1.2
3,699,063	+				-0.3
3,699,064	-				-0.9
3,699,064	-				+1.0
3,699,064	-				+0.4
3,699,064	-				+0.2
3,699,064	-				-1.0
3,699,085	+				-1.0
3,699,086	-				+1.3
3,699,086	-				-0.4
3,699,122	-				-0.7
3,699,127	+				-1.2
3,699,127	+				-1.4
3,699,128	-				-0.6
3,699,128	-				+0.3
3,699,190	+				+1.0
3,699,191	-				+0.4
3,699,191	-				-0.2
3,699,191	-				-0.8
3,699,215	+				-1.0
3,699,267	-				-0.3
3,699,276	+				-0.7
3,699,276	+				+1.5
3,699,276	+				-2.7
3,699,277	-				+0.1
3,699,277	-				-1.4
3,699,277	-				-0.1
3,699,291	+				+0.3
3,699,291	+				+0.1
3,699,292	-				+0.3
3,699,292	-				+0.9
3,699,292	-				-1.5
3,699,292	-				-1.2
3,699,327	+				-0.9
3,699,327	+				+0.2
3,699,327	+				-0.0
3,699,328	-				-0.3
3,699,328	-				-0.2
3,699,328	-				-0.8
3,699,328	-				+0.1
3,699,333	+				-0.4
3,699,348	+				+1.7
3,699,348	+				+0.9
3,699,349	-				+0.4
3,699,427	+				-1.2
3,699,501	+				+1.2
3,699,505	+				+0.6
3,699,506	-				+0.5
3,699,506	-				-1.3
3,699,506	-				-0.6
3,699,532	+				-0.6
3,699,533	-				-0.3
3,699,566	+				+0.6
3,699,566	+				+0.0
3,699,567	-				-0.2
3,699,594	+				-0.7
3,699,595	-				+1.1
3,699,679	+				-1.3
3,699,680	-				-1.4
3,699,680	-				-1.4
3,699,833	+				+0.6
3,699,834	-				-1.3
3,699,834	-				+0.3
3,699,834	-				+0.2
3,699,834	-				+1.4
3,699,981	+				-0.6
3,699,982	-				-0.7
3,699,982	-				-0.0
3,699,988	-				-0.2
3,699,998	+				+1.7
3,699,998	+				-1.3
3,699,999	-				+0.4
3,699,999	-				+1.4
3,700,011	+				+0.1
3,700,011	+				-0.9
3,700,012	-				-0.3
3,700,019	+				+0.2
3,700,019	+				-0.4
3,700,019	+				-0.5
3,700,020	-				-1.8
3,700,020	-				+0.1
3,700,020	-				+1.4
3,700,020	-				-1.1
3,700,020	-				+0.6
3,700,020	-				+0.1
3,700,020	-				-0.4
3,700,020	-				-0.6
3,700,022	-				-1.3
3,700,023	+				+1.0
3,700,023	+				+1.3
3,700,023	+				+0.9
3,700,023	+				+1.4
3,700,023	+				+1.5
3,700,024	-				+0.1
3,700,024	-				+0.8
3,700,024	-				-0.4
3,700,024	-				-1.5
3,700,024	-				+0.1
3,700,031	-				+1.5
3,700,031	-				+0.2
3,700,033	+				-1.1
3,700,034	-				+1.7
3,700,034	-				+0.3
3,700,034	-				+1.7
3,700,049	+				-1.1
3,700,049	+				-0.5
3,700,050	-				+0.7
3,700,050	-				-0.2
3,700,050	-				+0.2
3,700,050	-				+0.3
3,700,050	-				-0.7
3,700,050	-				-0.6
3,700,050	-				+1.1
3,700,089	+				-0.4
3,700,118	+		Sama_3120	0.12	-0.1
3,700,118	+		Sama_3120	0.12	-0.4
3,700,119	-		Sama_3120	0.12	+1.0
3,700,119	-		Sama_3120	0.12	-0.0
3,700,119	-		Sama_3120	0.12	+1.0
3,700,119	-		Sama_3120	0.12	+0.8
3,700,119	-		Sama_3120	0.12	-0.2
3,700,119	-		Sama_3120	0.12	+1.3
3,700,119	-		Sama_3120	0.12	+0.7
3,700,128	+		Sama_3120	0.14	-0.3
3,700,128	+		Sama_3120	0.14	-0.7
3,700,128	+		Sama_3120	0.14	-0.2
3,700,128	+		Sama_3120	0.14	+1.5
3,700,129	-		Sama_3120	0.14	-0.5
3,700,194	+		Sama_3120	0.26	+0.3
3,700,194	+		Sama_3120	0.26	+1.0
3,700,194	+		Sama_3120	0.26	-0.6
3,700,195	-		Sama_3120	0.26	-0.1
3,700,214	+		Sama_3120	0.29	+0.1
3,700,214	+		Sama_3120	0.29	+0.5
3,700,214	+		Sama_3120	0.29	+2.4
3,700,214	+		Sama_3120	0.29	+0.1
3,700,215	-		Sama_3120	0.30	-0.3
3,700,215	-		Sama_3120	0.30	-0.0
3,700,215	-		Sama_3120	0.30	-0.1
3,700,215	-		Sama_3120	0.30	+1.7
3,700,215	-		Sama_3120	0.30	+0.7
3,700,215	-		Sama_3120	0.30	-0.3
3,700,231	+		Sama_3120	0.33	+0.3
3,700,231	+		Sama_3120	0.33	-0.7
3,700,232	-		Sama_3120	0.33	+0.5
3,700,255	+		Sama_3120	0.37	-1.7
3,700,261	+		Sama_3120	0.38	+0.1
3,700,310	-		Sama_3120	0.47	-0.1
3,700,405	+		Sama_3120	0.65	+0.4
3,700,406	-		Sama_3120	0.65	-0.1
3,700,406	-		Sama_3120	0.65	+0.0
3,700,406	-		Sama_3120	0.65	-0.6
3,700,406	-		Sama_3120	0.65	-1.5
3,700,410	-		Sama_3120	0.66	+1.1
3,700,410	-		Sama_3120	0.66	+2.0
3,700,446	+		Sama_3120	0.72	+1.1
3,700,446	+		Sama_3120	0.72	-0.1
3,700,446	+		Sama_3120	0.72	-2.0
3,700,446	+		Sama_3120	0.72	+1.1
3,700,446	+		Sama_3120	0.72	-0.1
3,700,446	+		Sama_3120	0.72	+1.0
3,700,447	-		Sama_3120	0.73	+1.0
3,700,447	-		Sama_3120	0.73	+1.0
3,700,473	+		Sama_3120	0.77	-0.0
3,700,473	+		Sama_3120	0.77	-1.4
3,700,473	+		Sama_3120	0.77	-0.5
3,700,473	+		Sama_3120	0.77	-1.6
3,700,474	-		Sama_3120	0.78	-0.3
3,700,474	-		Sama_3120	0.78	+2.9
3,700,474	-		Sama_3120	0.78	-0.0
3,700,474	-		Sama_3120	0.78	+2.3
3,700,474	-		Sama_3120	0.78	+0.6
3,700,474	-		Sama_3120	0.78	+0.6
3,700,474	-		Sama_3120	0.78	+1.7
3,700,474	-		Sama_3120	0.78	+0.2
3,700,477	+		Sama_3120	0.78	+0.1
3,700,477	+		Sama_3120	0.78	+0.9
3,700,477	+		Sama_3120	0.78	+1.1
3,700,477	+		Sama_3120	0.78	+0.4
3,700,477	+		Sama_3120	0.78	+0.5
3,700,478	-		Sama_3120	0.78	-0.6
3,700,478	-		Sama_3120	0.78	+1.1
3,700,478	-		Sama_3120	0.78	+0.3
3,700,478	-		Sama_3120	0.78	+0.2
3,700,478	-		Sama_3120	0.78	-0.6
3,700,492	+		Sama_3120	0.81	-1.8
3,700,492	+		Sama_3120	0.81	+0.1
3,700,492	+		Sama_3120	0.81	-1.9
3,700,492	+		Sama_3120	0.81	-0.8
3,700,492	+		Sama_3120	0.81	+1.1
3,700,493	-		Sama_3120	0.81	+1.7
3,700,493	-		Sama_3120	0.81	-1.0
3,700,509	+		Sama_3120	0.84	+0.4
3,700,509	+		Sama_3120	0.84	-0.5
3,700,510	-		Sama_3120	0.84	-1.8
3,700,510	-		Sama_3120	0.84	+0.5
3,700,510	-		Sama_3120	0.84	+0.6
3,700,510	-		Sama_3120	0.84	+0.6
3,700,531	+		Sama_3120	0.88	+0.4
3,700,531	+		Sama_3120	0.88	+0.8
3,700,532	-		Sama_3120	0.88	+0.5
3,700,532	-		Sama_3120	0.88	-0.3
3,700,532	-		Sama_3120	0.88	+1.5
3,700,532	-		Sama_3120	0.88	+0.7
3,700,561	+				-1.9
3,700,561	+				-0.9
3,700,577	+				+1.1
3,700,578	-				+1.3
3,700,578	-				-0.1
3,700,578	-				+0.2
3,700,578	-				+0.1
3,700,590	+				-0.2
3,700,592	+				+0.1
3,700,592	+				+0.1
3,700,592	+				+0.6
3,700,593	-				-1.4
3,700,673	-				+0.0
3,700,708	+				-0.5
3,700,708	+				-0.0
3,700,723	+				-0.9
3,700,723	+				-0.9
3,700,728	+				+0.3
3,700,728	+				+0.4
3,700,729	-				-0.3
3,700,729	-				+1.4
3,700,732	+				-1.7
3,700,733	-				+1.4
3,700,733	-				-0.1
3,700,746	+				-1.4
3,700,747	-				+1.2
3,700,747	-				-1.3
3,700,755	+				+0.9
3,700,755	+				+0.5
3,700,755	+				-0.3
3,700,792	-				+0.7
3,700,828	+				+0.3
3,700,836	+				-0.3
3,700,836	+				-0.2
3,700,850	+				-0.6
3,700,851	-				+0.5
3,700,855	-				-0.1
3,700,855	-				+1.6
3,700,895	-				+0.1
3,700,916	+				-1.4
3,701,003	-				-0.4
3,701,102	+		Sama_3121	0.16	-0.2
3,701,157	-		Sama_3121	0.20	-0.3
3,701,241	-		Sama_3121	0.26	+0.5
3,701,296	-		Sama_3121	0.30	-0.5
3,701,316	-		Sama_3121	0.32	-0.9
3,701,335	+		Sama_3121	0.33	-0.5
3,701,377	+		Sama_3121	0.37	+0.4
3,701,380	-		Sama_3121	0.37	+1.0
3,701,380	-		Sama_3121	0.37	-0.1
3,701,384	+		Sama_3121	0.37	-1.0
3,701,394	-		Sama_3121	0.38	+0.4
3,701,401	-		Sama_3121	0.38	+0.2
3,701,451	+		Sama_3121	0.42	-2.2
3,701,451	+		Sama_3121	0.42	-0.7
3,701,508	+		Sama_3121	0.47	+0.1
3,701,535	+		Sama_3121	0.49	+0.3
3,701,589	-		Sama_3121	0.53	+0.6