Strain Fitness in Shewanella amazonensis SB2B around Sama_2973

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,541,827	-		Sama_2972	0.69	-0.2
3,541,846	+		Sama_2972	0.69	-2.2
3,541,847	-		Sama_2972	0.69	-1.1
3,541,847	-		Sama_2972	0.69	+0.4
3,541,894	+		Sama_2972	0.71	+1.4
3,541,895	-		Sama_2972	0.71	+0.7
3,541,895	-		Sama_2972	0.71	-0.0
3,541,911	+		Sama_2972	0.72	-1.2
3,541,911	+		Sama_2972	0.72	-0.5
3,541,911	+		Sama_2972	0.72	-0.5
3,541,911	+		Sama_2972	0.72	-1.2
3,541,911	+		Sama_2972	0.72	+0.7
3,541,911	+		Sama_2972	0.72	-0.3
3,541,911	+		Sama_2972	0.72	-0.6
3,541,911	+		Sama_2972	0.72	-3.4
3,541,912	-		Sama_2972	0.72	-2.0
3,541,979	+		Sama_2972	0.75	-0.2
3,541,979	+		Sama_2972	0.75	-0.7
3,541,980	-		Sama_2972	0.75	-0.6
3,541,985	+		Sama_2972	0.75	+0.6
3,541,985	+		Sama_2972	0.75	+0.1
3,541,985	+		Sama_2972	0.75	-0.6
3,541,986	-		Sama_2972	0.75	-1.3
3,541,986	-		Sama_2972	0.75	-1.8
3,542,050	+		Sama_2972	0.78	-0.4
3,542,050	+		Sama_2972	0.78	-0.5
3,542,051	-		Sama_2972	0.78	+0.3
3,542,051	-		Sama_2972	0.78	+1.2
3,542,051	-		Sama_2972	0.78	-0.7
3,542,051	-		Sama_2972	0.78	-0.4
3,542,133	+		Sama_2972	0.81	-0.4
3,542,133	+		Sama_2972	0.81	-0.6
3,542,134	-		Sama_2972	0.81	-2.0
3,542,159	+		Sama_2972	0.82	+0.4
3,542,159	+		Sama_2972	0.82	-0.6
3,542,159	+		Sama_2972	0.82	+0.3
3,542,160	-		Sama_2972	0.82	-0.7
3,542,249	+		Sama_2972	0.85	-0.4
3,542,250	-		Sama_2972	0.85	-0.8
3,542,252	+		Sama_2972	0.86	-1.6
3,542,252	+		Sama_2972	0.86	-2.0
3,542,253	-		Sama_2972	0.86	-0.4
3,542,253	-		Sama_2972	0.86	-0.4
3,542,253	-		Sama_2972	0.86	+0.4
3,542,259	+		Sama_2972	0.86	+1.9
3,542,260	-		Sama_2972	0.86	-0.9
3,542,260	-		Sama_2972	0.86	+1.0
3,542,260	-		Sama_2972	0.86	-0.0
3,542,260	-		Sama_2972	0.86	+0.1
3,542,345	+		Sama_2972	0.89	-0.1
3,542,345	+		Sama_2972	0.89	-0.1
3,542,345	+		Sama_2972	0.89	-0.3
3,542,345	+		Sama_2972	0.89	-1.5
3,542,345	+		Sama_2972	0.89	-2.0
3,542,345	+		Sama_2972	0.89	+0.1
3,542,346	-		Sama_2972	0.89	+0.6
3,542,346	-		Sama_2972	0.89	+1.1
3,542,346	-		Sama_2972	0.89	+0.2
3,542,346	-		Sama_2972	0.89	-0.1
3,542,346	-		Sama_2972	0.89	+1.0
3,542,346	-		Sama_2972	0.89	-2.3
3,542,346	-		Sama_2972	0.89	+0.9
3,542,346	-		Sama_2972	0.89	-0.5
3,542,408	+				-0.5
3,542,470	-				-0.7
3,542,646	+				-1.2
3,542,646	+				+0.5
3,542,646	+				-0.0
3,542,707	+				+0.2
3,542,707	+				+0.1
3,542,707	+				-1.5
3,542,708	-				+1.7
3,542,708	-				+0.2
3,542,708	-				+0.6
3,542,711	+				+0.1
3,542,712	-				-0.5
3,542,712	-				-1.0
3,542,712	-				-0.1
3,542,781	+				-1.6
3,542,781	+				-2.0
3,542,782	-				-1.2
3,542,782	-				+1.7
3,542,793	+				+0.4
3,542,793	+				-0.3
3,542,794	-				-1.5
3,542,869	+				+0.1
3,542,870	-				+0.5
3,542,985	+		Sama_2973	0.13	-0.8
3,543,032	-		Sama_2973	0.15	-2.4
3,543,116	+		Sama_2973	0.19	-1.2
3,543,116	+		Sama_2973	0.19	-2.3
3,543,117	-		Sama_2973	0.19	+0.5
3,543,117	-		Sama_2973	0.19	+1.0
3,543,117	-		Sama_2973	0.19	+0.5
3,543,121	+		Sama_2973	0.19	+0.9
3,543,121	+		Sama_2973	0.19	+1.2
3,543,121	+		Sama_2973	0.19	-0.4
3,543,152	+		Sama_2973	0.21	+0.8
3,543,152	+		Sama_2973	0.21	-0.6
3,543,152	+		Sama_2973	0.21	+3.3
3,543,152	+		Sama_2973	0.21	-1.5
3,543,153	-		Sama_2973	0.21	-0.5
3,543,169	+		Sama_2973	0.21	-0.7
3,543,169	+		Sama_2973	0.21	-1.1
3,543,272	+		Sama_2973	0.26	-1.6
3,543,272	+		Sama_2973	0.26	-0.8
3,543,273	-		Sama_2973	0.26	-0.3
3,543,306	+		Sama_2973	0.28	-1.5
3,543,307	-		Sama_2973	0.28	+0.9
3,543,378	-		Sama_2973	0.31	-1.3
3,543,385	+		Sama_2973	0.31	-0.4
3,543,386	-		Sama_2973	0.31	-2.6
3,543,392	-		Sama_2973	0.31	-1.1
3,543,422	-		Sama_2973	0.33	+0.4
3,543,429	+		Sama_2973	0.33	+0.5
3,543,429	+		Sama_2973	0.33	-1.0
3,543,429	+		Sama_2973	0.33	+1.0
3,543,429	+		Sama_2973	0.33	-1.1
3,543,429	+		Sama_2973	0.33	+2.7
3,543,430	-		Sama_2973	0.33	-0.7
3,543,430	-		Sama_2973	0.33	+0.1
3,543,432	+		Sama_2973	0.33	+0.9
3,543,433	-		Sama_2973	0.33	-0.3
3,543,464	+		Sama_2973	0.35	+0.1
3,543,464	+		Sama_2973	0.35	+0.2
3,543,464	+		Sama_2973	0.35	+0.5
3,543,464	+		Sama_2973	0.35	-1.5
3,543,464	+		Sama_2973	0.35	+0.2
3,543,464	+		Sama_2973	0.35	+0.6
3,543,464	+		Sama_2973	0.35	-0.9
3,543,464	+		Sama_2973	0.35	-0.2
3,543,465	-		Sama_2973	0.35	+0.2
3,543,465	-		Sama_2973	0.35	-0.5
3,543,465	-		Sama_2973	0.35	-0.3
3,543,465	-		Sama_2973	0.35	-2.5
3,543,465	-		Sama_2973	0.35	+1.4
3,543,465	-		Sama_2973	0.35	-0.2
3,543,465	-		Sama_2973	0.35	+0.1
3,543,465	-		Sama_2973	0.35	+0.6
3,543,465	-		Sama_2973	0.35	+0.7
3,543,465	-		Sama_2973	0.35	-1.3
3,543,495	+		Sama_2973	0.36	+0.5
3,543,496	-		Sama_2973	0.36	+1.2
3,543,528	+		Sama_2973	0.38	-0.6
3,543,528	+		Sama_2973	0.38	+0.9
3,543,528	+		Sama_2973	0.38	-1.2
3,543,528	+		Sama_2973	0.38	+1.3
3,543,528	+		Sama_2973	0.38	-1.1
3,543,528	+		Sama_2973	0.38	+0.8
3,543,528	+		Sama_2973	0.38	-0.3
3,543,528	+		Sama_2973	0.38	-1.1
3,543,528	+		Sama_2973	0.38	+0.3
3,543,528	+		Sama_2973	0.38	-0.8
3,543,529	-		Sama_2973	0.38	-0.9
3,543,529	-		Sama_2973	0.38	-0.2
3,543,529	-		Sama_2973	0.38	-0.7
3,543,529	-		Sama_2973	0.38	-0.8
3,543,529	-		Sama_2973	0.38	+0.7
3,543,529	-		Sama_2973	0.38	-0.0
3,543,532	+		Sama_2973	0.38	-0.3
3,543,533	-		Sama_2973	0.38	-1.2
3,543,533	-		Sama_2973	0.38	-0.1
3,543,533	-		Sama_2973	0.38	-0.3
3,543,533	-		Sama_2973	0.38	+0.6
3,543,533	-		Sama_2973	0.38	+1.8
3,543,533	-		Sama_2973	0.38	+0.0
3,543,533	-		Sama_2973	0.38	+0.1
3,543,533	-		Sama_2973	0.38	+0.8
3,543,600	+		Sama_2973	0.41	+0.9
3,543,600	+		Sama_2973	0.41	-1.1
3,543,600	+		Sama_2973	0.41	+0.9
3,543,601	-		Sama_2973	0.41	+0.5
3,543,601	-		Sama_2973	0.41	+1.0
3,543,601	-		Sama_2973	0.41	-1.0
3,543,601	-		Sama_2973	0.41	-0.2
3,543,601	-		Sama_2973	0.41	+0.1
3,543,601	-		Sama_2973	0.41	-0.4
3,543,601	-		Sama_2973	0.41	-1.3
3,543,601	-		Sama_2973	0.41	-0.0
3,543,604	+		Sama_2973	0.41	-0.1
3,543,605	-		Sama_2973	0.41	+0.0
3,543,701	-		Sama_2973	0.45	-1.1
3,543,744	+		Sama_2973	0.47	-0.1
3,543,744	+		Sama_2973	0.47	+0.6
3,543,744	+		Sama_2973	0.47	-0.2
3,543,745	-		Sama_2973	0.47	-1.2
3,543,745	-		Sama_2973	0.47	+0.1
3,543,999	+		Sama_2973	0.59	-0.4
3,543,999	+		Sama_2973	0.59	-1.0
3,543,999	+		Sama_2973	0.59	+0.6
3,544,000	-		Sama_2973	0.59	-1.3
3,544,067	+		Sama_2973	0.62	+0.9
3,544,067	+		Sama_2973	0.62	-0.7
3,544,067	+		Sama_2973	0.62	+0.4
3,544,068	-		Sama_2973	0.62	+0.3
3,544,068	-		Sama_2973	0.62	+0.5
3,544,068	-		Sama_2973	0.62	-0.2
3,544,226	+		Sama_2973	0.69	+0.1
3,544,277	+		Sama_2973	0.72	-0.0
3,544,277	+		Sama_2973	0.72	-0.2
3,544,277	+		Sama_2973	0.72	-1.0
3,544,278	-		Sama_2973	0.72	-0.8
3,544,278	-		Sama_2973	0.72	-1.5
3,544,278	-		Sama_2973	0.72	-0.9
3,544,278	-		Sama_2973	0.72	-0.0
3,544,295	+		Sama_2973	0.72	+0.4
3,544,295	+		Sama_2973	0.72	+0.2
3,544,296	-		Sama_2973	0.72	+0.1
3,544,303	+		Sama_2973	0.73	-2.5
3,544,303	+		Sama_2973	0.73	+0.3
3,544,303	+		Sama_2973	0.73	+0.0
3,544,303	+		Sama_2973	0.73	+0.4
3,544,304	-		Sama_2973	0.73	+0.1
3,544,304	-		Sama_2973	0.73	-1.9
3,544,304	-		Sama_2973	0.73	-1.5
3,544,304	-		Sama_2973	0.73	-0.8
3,544,356	+		Sama_2973	0.75	+0.7
3,544,391	-		Sama_2973	0.77	-0.2
3,544,417	+		Sama_2973	0.78	-1.5
3,544,417	+		Sama_2973	0.78	+0.3
3,544,417	+		Sama_2973	0.78	-0.1
3,544,417	+		Sama_2973	0.78	-0.6
3,544,417	+		Sama_2973	0.78	+0.7
3,544,418	-		Sama_2973	0.78	+0.5
3,544,447	+		Sama_2973	0.79	+0.4
3,544,447	+		Sama_2973	0.79	+1.0
3,544,448	-		Sama_2973	0.79	+0.3
3,544,448	-		Sama_2973	0.79	-2.0
3,544,619	-		Sama_2973	0.87	-0.3
3,544,619	-		Sama_2973	0.87	-0.0
3,544,640	+		Sama_2973	0.88	+0.2
3,544,640	+		Sama_2973	0.88	+0.4
3,544,641	-		Sama_2973	0.88	+1.7
3,544,653	+		Sama_2973	0.89	+0.1
3,544,653	+		Sama_2973	0.89	-0.9
3,544,653	+		Sama_2973	0.89	-0.3
3,544,654	-		Sama_2973	0.89	-1.3
3,544,660	+		Sama_2973	0.89	+1.4
3,544,660	+		Sama_2973	0.89	-0.9
3,544,660	+		Sama_2973	0.89	+0.3
3,544,660	+		Sama_2973	0.89	+0.7
3,544,661	-		Sama_2973	0.89	+0.9
3,544,661	-		Sama_2973	0.89	+0.1
3,544,661	-		Sama_2973	0.89	+0.4
3,544,661	-		Sama_2973	0.89	-0.1
3,544,716	+				+0.8
3,544,716	+				+0.1
3,544,717	-				+0.3
3,544,720	+				-0.3
3,544,721	-				-0.9
3,544,721	-				-0.8
3,544,856	+				+0.4
3,544,886	+				+0.1
3,544,887	-				+0.1
3,544,887	-				+0.1
3,544,903	+				-1.0
3,544,903	+				+1.7
3,544,903	+				+0.1
3,544,903	+				-2.2
3,544,904	-				+0.5
3,544,904	-				+1.3
3,544,904	-				-1.6
3,544,904	-				-0.5
3,544,904	-				+0.2
3,544,904	-				-0.2
3,544,904	-				-0.6
3,544,904	-				+1.1
3,544,926	+				+0.1
3,544,927	-				-0.3
3,544,933	+				+0.3
3,544,953	+				-0.6
3,544,953	+				+0.0
3,544,953	+				-0.3
3,544,953	+				-1.2
3,544,953	+				-1.1
3,544,954	-				+0.5
3,544,954	-				-0.6
3,544,955	+				+0.7
3,544,955	+				+2.7
3,544,955	+				-1.1
3,544,955	+				-2.3
3,544,956	-				-0.6
3,544,956	-				-0.4
3,544,971	-				+0.1
3,544,978	+				+1.1
3,544,978	+				-0.8
3,544,989	-				+1.3
3,544,996	+				+0.1
3,544,997	-				-0.4
3,544,997	-				+0.2
3,544,997	-				+1.3
3,544,997	-				+1.4
3,544,997	-				+0.1
3,544,997	-				+0.7
3,545,016	+				-1.3
3,545,017	-				+0.7
3,545,017	-				+0.5
3,545,022	+				+1.4
3,545,062	+		Sama_2974	0.12	-0.1
3,545,062	+		Sama_2974	0.12	-0.6
3,545,062	+		Sama_2974	0.12	+0.1
3,545,062	+		Sama_2974	0.12	+2.0
3,545,062	+		Sama_2974	0.12	-0.6
3,545,063	-		Sama_2974	0.12	+0.7
3,545,063	-		Sama_2974	0.12	-1.1
3,545,063	-		Sama_2974	0.12	+0.8
3,545,063	-		Sama_2974	0.12	+0.3
3,545,063	-		Sama_2974	0.12	+0.2
3,545,063	-		Sama_2974	0.12	-0.6
3,545,063	-		Sama_2974	0.12	+0.0
3,545,063	-		Sama_2974	0.12	+0.4
3,545,063	-		Sama_2974	0.12	-1.2
3,545,063	-		Sama_2974	0.12	-0.1
3,545,063	-		Sama_2974	0.12	-0.6
3,545,119	+		Sama_2974	0.23	-1.6
3,545,120	-		Sama_2974	0.23	-0.9
3,545,250	+		Sama_2974	0.48	+0.4
3,545,250	+		Sama_2974	0.48	+0.2
3,545,251	-		Sama_2974	0.48	-0.0
3,545,297	+		Sama_2974	0.57	-0.7
3,545,357	-		Sama_2974	0.68	-0.3
3,545,365	+		Sama_2974	0.70	-1.1
3,545,427	+		Sama_2974	0.81	-0.2
3,545,447	-		Sama_2974	0.85	+0.3
3,545,554	+				-1.6
3,545,554	+				+0.4
3,545,554	+				-2.2
3,545,554	+				+0.1
3,545,554	+				-1.0
3,545,555	-				-1.1
3,545,555	-				-0.1
3,545,555	-				-0.1
3,545,555	-				-0.9
3,545,555	-				+0.1
3,545,558	+				-0.8
3,545,558	+				+0.8
3,545,558	+				+0.4
3,545,558	+				-0.4
3,545,559	-				-0.1
3,545,559	-				+0.5
3,545,559	-				-0.5
3,545,559	-				-0.5
3,545,559	-				-0.5
3,545,559	-				-0.2
3,545,559	-				+0.1
3,545,559	-				-0.3
3,545,559	-				-0.2
3,545,559	-				+0.2
3,545,576	+				-0.0
3,545,577	-				-1.0
3,545,596	+		Sama_2975	0.14	+0.3
3,545,597	-		Sama_2975	0.14	+0.4
3,545,636	-		Sama_2975	0.22	+2.1
3,545,681	+		Sama_2975	0.31	-0.1
3,545,857	+		Sama_2975	0.66	-3.1
3,545,858	-		Sama_2975	0.66	-0.1
3,545,858	-		Sama_2975	0.66	-0.0
3,545,858	-		Sama_2975	0.66	-1.3
3,545,858	-		Sama_2975	0.66	+1.4
3,545,858	-		Sama_2975	0.66	-0.4