Strain Fitness in Shewanella amazonensis SB2B around Sama_2871

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,408,141	+		Sama_2870	0.14	+0.6
3,408,142	-		Sama_2870	0.14	-1.1
3,408,142	-		Sama_2870	0.14	+0.0
3,408,161	-		Sama_2870	0.16	-0.7
3,408,163	+		Sama_2870	0.16	-0.7
3,408,163	+		Sama_2870	0.16	-2.1
3,408,163	+		Sama_2870	0.16	-1.5
3,408,163	+		Sama_2870	0.16	-0.2
3,408,164	-		Sama_2870	0.16	-3.8
3,408,207	-		Sama_2870	0.20	-1.7
3,408,207	-		Sama_2870	0.20	-1.0
3,408,218	-		Sama_2870	0.21	-0.7
3,408,218	-		Sama_2870	0.21	-2.1
3,408,218	-		Sama_2870	0.21	+0.6
3,408,292	+		Sama_2870	0.29	-2.3
3,408,349	+		Sama_2870	0.34	-2.7
3,408,349	+		Sama_2870	0.34	-2.4
3,408,349	+		Sama_2870	0.34	-1.3
3,408,349	+		Sama_2870	0.34	+0.0
3,408,349	+		Sama_2870	0.34	-2.0
3,408,350	-		Sama_2870	0.34	-1.2
3,408,350	-		Sama_2870	0.34	-2.1
3,408,350	-		Sama_2870	0.34	-1.0
3,408,350	-		Sama_2870	0.34	-1.5
3,408,350	-		Sama_2870	0.34	-2.3
3,408,384	-		Sama_2870	0.38	-0.8
3,408,384	-		Sama_2870	0.38	-1.2
3,408,384	-		Sama_2870	0.38	+1.0
3,408,384	-		Sama_2870	0.38	-0.7
3,408,395	+		Sama_2870	0.39	-0.5
3,408,396	-		Sama_2870	0.39	-0.4
3,408,426	+		Sama_2870	0.42	-1.5
3,408,427	-		Sama_2870	0.42	-0.2
3,408,520	-		Sama_2870	0.51	-1.7
3,408,595	+		Sama_2870	0.58	-3.0
3,408,595	+		Sama_2870	0.58	+0.5
3,408,596	-		Sama_2870	0.58	-0.4
3,408,597	+		Sama_2870	0.58	-2.0
3,408,609	+		Sama_2870	0.59	-2.2
3,408,609	+		Sama_2870	0.59	-0.8
3,408,609	+		Sama_2870	0.59	-2.4
3,408,610	-		Sama_2870	0.59	+0.0
3,408,610	-		Sama_2870	0.59	-3.0
3,408,610	-		Sama_2870	0.59	-2.4
3,408,640	+		Sama_2870	0.62	-2.5
3,408,640	+		Sama_2870	0.62	-2.0
3,408,640	+		Sama_2870	0.62	-1.7
3,408,641	-		Sama_2870	0.62	-3.2
3,408,641	-		Sama_2870	0.62	-2.8
3,408,641	-		Sama_2870	0.62	-1.4
3,408,641	-		Sama_2870	0.62	-2.3
3,408,657	+		Sama_2870	0.64	-1.1
3,408,657	+		Sama_2870	0.64	-1.7
3,408,658	-		Sama_2870	0.64	+1.6
3,408,787	+		Sama_2870	0.77	-2.1
3,408,788	-		Sama_2870	0.77	-1.8
3,408,814	+		Sama_2870	0.79	-1.2
3,408,815	-		Sama_2870	0.79	-2.4
3,408,873	+		Sama_2870	0.85	-1.4
3,408,873	+		Sama_2870	0.85	-1.2
3,408,874	-		Sama_2870	0.85	-1.5
3,408,955	+				-1.4
3,409,077	+				+0.6
3,409,100	+				+1.6
3,409,101	-				-1.5
3,409,126	-				-0.4
3,409,242	-				+1.0
3,409,260	-				+0.2
3,409,260	-				+0.4
3,409,260	-				-0.3
3,409,260	-				-1.4
3,409,260	-				-0.5
3,409,335	-		Sama_2871	0.13	-0.4
3,409,398	+		Sama_2871	0.17	-0.2
3,409,399	-		Sama_2871	0.17	+0.6
3,409,399	-		Sama_2871	0.17	-0.7
3,409,399	-		Sama_2871	0.17	+1.1
3,409,399	-		Sama_2871	0.17	-0.5
3,409,399	-		Sama_2871	0.17	+1.6
3,409,400	+		Sama_2871	0.17	-0.5
3,409,400	+		Sama_2871	0.17	+0.0
3,409,400	+		Sama_2871	0.17	-0.4
3,409,400	+		Sama_2871	0.17	+1.4
3,409,400	+		Sama_2871	0.17	-0.2
3,409,400	+		Sama_2871	0.17	-1.4
3,409,400	+		Sama_2871	0.17	-0.3
3,409,400	+		Sama_2871	0.17	+0.2
3,409,401	-		Sama_2871	0.17	-1.8
3,409,401	-		Sama_2871	0.17	-2.0
3,409,401	-		Sama_2871	0.17	-0.5
3,409,401	-		Sama_2871	0.17	+0.7
3,409,401	-		Sama_2871	0.17	+0.0
3,409,468	+		Sama_2871	0.21	-0.4
3,409,468	+		Sama_2871	0.21	-2.5
3,409,469	-		Sama_2871	0.21	-1.7
3,409,476	-		Sama_2871	0.21	+0.3
3,409,521	+		Sama_2871	0.24	-1.0
3,409,521	+		Sama_2871	0.24	-1.8
3,409,521	+		Sama_2871	0.24	-0.4
3,409,522	-		Sama_2871	0.24	-0.8
3,409,522	-		Sama_2871	0.24	+0.3
3,409,522	-		Sama_2871	0.24	+0.1
3,409,522	-		Sama_2871	0.24	+0.2
3,409,522	-		Sama_2871	0.24	-0.3
3,409,525	+		Sama_2871	0.24	-0.7
3,409,525	+		Sama_2871	0.24	+2.2
3,409,526	-		Sama_2871	0.24	-1.3
3,409,526	-		Sama_2871	0.24	+0.3
3,409,562	+		Sama_2871	0.26	+0.4
3,409,562	+		Sama_2871	0.26	+1.8
3,409,563	-		Sama_2871	0.27	+2.8
3,409,564	+		Sama_2871	0.27	-0.2
3,409,564	+		Sama_2871	0.27	-1.5
3,409,564	+		Sama_2871	0.27	-0.3
3,409,565	-		Sama_2871	0.27	-0.2
3,409,565	-		Sama_2871	0.27	+0.0
3,409,578	+		Sama_2871	0.27	+0.6
3,409,579	-		Sama_2871	0.27	+0.0
3,409,579	-		Sama_2871	0.27	-0.5
3,409,587	-		Sama_2871	0.28	-0.6
3,409,702	-		Sama_2871	0.35	+0.8
3,409,721	+		Sama_2871	0.36	+0.6
3,409,721	+		Sama_2871	0.36	-0.6
3,409,721	+		Sama_2871	0.36	-0.5
3,409,721	+		Sama_2871	0.36	-0.4
3,409,721	+		Sama_2871	0.36	-0.1
3,409,721	+		Sama_2871	0.36	+0.6
3,409,721	+		Sama_2871	0.36	-0.5
3,409,722	-		Sama_2871	0.36	-1.5
3,409,722	-		Sama_2871	0.36	-1.9
3,409,722	-		Sama_2871	0.36	+0.0
3,409,723	+		Sama_2871	0.36	-0.0
3,409,723	+		Sama_2871	0.36	-2.8
3,409,723	+		Sama_2871	0.36	-1.2
3,409,723	+		Sama_2871	0.36	-0.0
3,409,723	+		Sama_2871	0.36	+0.4
3,409,723	+		Sama_2871	0.36	-2.2
3,409,723	+		Sama_2871	0.36	+2.4
3,409,723	+		Sama_2871	0.36	+0.3
3,409,723	+		Sama_2871	0.36	-1.1
3,409,723	+		Sama_2871	0.36	-0.2
3,409,723	+		Sama_2871	0.36	+0.0
3,409,723	+		Sama_2871	0.36	-0.1
3,409,724	-		Sama_2871	0.36	-0.5
3,409,724	-		Sama_2871	0.36	-1.5
3,409,724	-		Sama_2871	0.36	+0.0
3,409,724	-		Sama_2871	0.36	-0.8
3,409,724	-		Sama_2871	0.36	-0.3
3,409,724	-		Sama_2871	0.36	-1.6
3,409,724	-		Sama_2871	0.36	+0.3
3,409,724	-		Sama_2871	0.36	-0.2
3,409,724	-		Sama_2871	0.36	-0.4
3,409,724	-		Sama_2871	0.36	-0.0
3,409,724	-		Sama_2871	0.36	+0.4
3,409,724	-		Sama_2871	0.36	+1.0
3,409,724	-		Sama_2871	0.36	-2.3
3,409,724	-		Sama_2871	0.36	-1.5
3,409,724	-		Sama_2871	0.36	-0.7
3,409,765	+		Sama_2871	0.38	-0.1
3,409,766	-		Sama_2871	0.39	-1.3
3,409,832	+		Sama_2871	0.42	-1.0
3,409,832	+		Sama_2871	0.42	-1.0
3,409,832	+		Sama_2871	0.42	-0.6
3,409,833	-		Sama_2871	0.42	-0.7
3,409,833	-		Sama_2871	0.42	-2.1
3,409,846	-		Sama_2871	0.43	+2.6
3,409,873	+		Sama_2871	0.45	+0.3
3,409,873	+		Sama_2871	0.45	+0.2
3,409,873	+		Sama_2871	0.45	-1.0
3,409,874	-		Sama_2871	0.45	-0.6
3,409,874	-		Sama_2871	0.45	-1.2
3,409,874	-		Sama_2871	0.45	+0.1
3,409,874	-		Sama_2871	0.45	+1.4
3,409,874	-		Sama_2871	0.45	+0.9
3,409,874	-		Sama_2871	0.45	+1.6
3,409,874	-		Sama_2871	0.45	-0.2
3,409,893	+		Sama_2871	0.46	-0.5
3,409,893	+		Sama_2871	0.46	+0.4
3,409,983	-		Sama_2871	0.51	-0.3
3,410,022	+		Sama_2871	0.54	-0.1
3,410,023	-		Sama_2871	0.54	+0.3
3,410,023	-		Sama_2871	0.54	+0.0
3,410,065	+		Sama_2871	0.56	-0.1
3,410,066	-		Sama_2871	0.56	+1.0
3,410,066	-		Sama_2871	0.56	+1.2
3,410,066	-		Sama_2871	0.56	+0.6
3,410,066	-		Sama_2871	0.56	-1.0
3,410,066	-		Sama_2871	0.56	-0.0
3,410,098	+		Sama_2871	0.58	-3.6
3,410,098	+		Sama_2871	0.58	-0.5
3,410,098	+		Sama_2871	0.58	+2.0
3,410,098	+		Sama_2871	0.58	-1.5
3,410,098	+		Sama_2871	0.58	+1.4
3,410,098	+		Sama_2871	0.58	+0.3
3,410,098	+		Sama_2871	0.58	+0.4
3,410,099	-		Sama_2871	0.58	-2.2
3,410,099	-		Sama_2871	0.58	-0.4
3,410,099	-		Sama_2871	0.58	+0.0
3,410,099	-		Sama_2871	0.58	-2.1
3,410,099	-		Sama_2871	0.58	-1.0
3,410,099	-		Sama_2871	0.58	-1.0
3,410,099	-		Sama_2871	0.58	+0.6
3,410,099	-		Sama_2871	0.58	+1.6
3,410,099	-		Sama_2871	0.58	-1.3
3,410,107	+		Sama_2871	0.59	+0.3
3,410,107	+		Sama_2871	0.59	-0.0
3,410,108	-		Sama_2871	0.59	-1.4
3,410,108	-		Sama_2871	0.59	+1.4
3,410,108	-		Sama_2871	0.59	-0.2
3,410,119	+		Sama_2871	0.59	+0.9
3,410,119	+		Sama_2871	0.59	+0.3
3,410,119	+		Sama_2871	0.59	-0.1
3,410,119	+		Sama_2871	0.59	-2.0
3,410,119	+		Sama_2871	0.59	+1.2
3,410,119	+		Sama_2871	0.59	+0.2
3,410,119	+		Sama_2871	0.59	+0.9
3,410,120	-		Sama_2871	0.59	-0.2
3,410,120	-		Sama_2871	0.59	-1.8
3,410,120	-		Sama_2871	0.59	+0.7
3,410,120	-		Sama_2871	0.59	+0.6
3,410,128	+		Sama_2871	0.60	+0.9
3,410,128	+		Sama_2871	0.60	+0.1
3,410,165	+		Sama_2871	0.62	-0.5
3,410,165	+		Sama_2871	0.62	-2.0
3,410,166	-		Sama_2871	0.62	+0.4
3,410,166	-		Sama_2871	0.62	-0.3
3,410,166	-		Sama_2871	0.62	-0.0
3,410,174	+		Sama_2871	0.63	+0.4
3,410,174	+		Sama_2871	0.63	+0.6
3,410,174	+		Sama_2871	0.63	-0.4
3,410,174	+		Sama_2871	0.63	+1.3
3,410,174	+		Sama_2871	0.63	-1.5
3,410,175	-		Sama_2871	0.63	-0.6
3,410,175	-		Sama_2871	0.63	+0.4
3,410,175	-		Sama_2871	0.63	-0.7
3,410,175	-		Sama_2871	0.63	-0.7
3,410,175	-		Sama_2871	0.63	+0.3
3,410,176	+		Sama_2871	0.63	-1.2
3,410,176	+		Sama_2871	0.63	-1.4
3,410,176	+		Sama_2871	0.63	-0.2
3,410,176	+		Sama_2871	0.63	-0.7
3,410,176	+		Sama_2871	0.63	+0.7
3,410,176	+		Sama_2871	0.63	+0.5
3,410,176	+		Sama_2871	0.63	+0.0
3,410,177	-		Sama_2871	0.63	-0.8
3,410,177	-		Sama_2871	0.63	+1.2
3,410,177	-		Sama_2871	0.63	-1.8
3,410,177	-		Sama_2871	0.63	-2.3
3,410,177	-		Sama_2871	0.63	-2.1
3,410,177	-		Sama_2871	0.63	+0.0
3,410,177	-		Sama_2871	0.63	-2.5
3,410,177	-		Sama_2871	0.63	-0.7
3,410,177	-		Sama_2871	0.63	-0.7
3,410,178	+		Sama_2871	0.63	-0.8
3,410,178	+		Sama_2871	0.63	-0.4
3,410,178	+		Sama_2871	0.63	+1.2
3,410,178	+		Sama_2871	0.63	-1.5
3,410,178	+		Sama_2871	0.63	+0.6
3,410,178	+		Sama_2871	0.63	-0.1
3,410,178	+		Sama_2871	0.63	-0.1
3,410,179	-		Sama_2871	0.63	-2.1
3,410,179	-		Sama_2871	0.63	-0.4
3,410,179	-		Sama_2871	0.63	-0.0
3,410,179	-		Sama_2871	0.63	-1.0
3,410,179	-		Sama_2871	0.63	+0.5
3,410,193	-		Sama_2871	0.64	-0.7
3,410,206	+		Sama_2871	0.64	+1.0
3,410,206	+		Sama_2871	0.64	-0.7
3,410,207	-		Sama_2871	0.65	+1.8
3,410,207	-		Sama_2871	0.65	-0.7
3,410,207	-		Sama_2871	0.65	+0.5
3,410,207	-		Sama_2871	0.65	-0.7
3,410,224	+		Sama_2871	0.66	-0.5
3,410,225	-		Sama_2871	0.66	-1.5
3,410,225	-		Sama_2871	0.66	-2.0
3,410,247	-		Sama_2871	0.67	+1.6
3,410,247	-		Sama_2871	0.67	+0.0
3,410,263	+		Sama_2871	0.68	-0.1
3,410,264	-		Sama_2871	0.68	+0.8
3,410,311	+		Sama_2871	0.71	-1.0
3,410,311	+		Sama_2871	0.71	-0.1
3,410,311	+		Sama_2871	0.71	-0.4
3,410,312	-		Sama_2871	0.71	-1.2
3,410,353	-		Sama_2871	0.73	+0.2
3,410,353	-		Sama_2871	0.73	-0.2
3,410,353	-		Sama_2871	0.73	-0.4
3,410,353	-		Sama_2871	0.73	+0.2
3,410,373	+		Sama_2871	0.74	-1.3
3,410,412	-		Sama_2871	0.77	-0.1
3,410,467	+		Sama_2871	0.80	-2.3
3,410,482	+		Sama_2871	0.81	+0.4
3,410,510	+		Sama_2871	0.82	-0.7
3,410,510	+		Sama_2871	0.82	-0.4
3,410,652	+				-0.4
3,410,652	+				-0.4
3,410,652	+				-2.0
3,410,653	-				-1.2
3,410,653	-				-1.3
3,410,653	-				+0.6
3,410,653	-				-0.7
3,410,653	-				+0.5
3,410,656	+				-0.5
3,410,657	-				-0.1
3,410,657	-				-1.0
3,410,673	+				+1.3
3,410,673	+				-0.5
3,410,674	-				+0.1
3,410,674	-				+0.0
3,410,674	-				-0.2
3,410,674	-				+0.0
3,410,682	-				+0.0
3,410,707	+				-1.2
3,410,708	-				-0.7
3,410,749	+				+0.3
3,410,749	+				+0.0
3,410,789	+				-0.7
3,410,789	+				+0.9
3,410,793	+				-1.0
3,410,793	+				+0.1
3,410,793	+				-1.3
3,410,794	-				-1.5
3,410,802	+				+0.3
3,410,802	+				+1.2
3,410,802	+				+0.7
3,410,802	+				+0.0
3,410,802	+				+0.0
3,410,802	+				-0.4
3,410,802	+				+0.6
3,410,802	+				-0.8
3,410,802	+				+0.3
3,410,803	-				-1.0
3,410,803	-				+0.4
3,410,803	-				-1.4
3,410,803	-				+0.2
3,410,803	-				-2.2
3,410,803	-				+0.1
3,410,803	-				-1.1
3,410,803	-				-1.2
3,410,807	+				-0.5
3,410,807	+				-0.4
3,410,807	+				-0.4
3,410,807	+				+0.0
3,410,807	+				-2.2
3,410,808	-				-0.2
3,410,808	-				+0.7
3,410,808	-				+2.2
3,410,808	-				-0.7
3,410,808	-				-1.4
3,410,831	+				+0.7
3,410,831	+				-1.0
3,410,831	+				-1.2
3,410,831	+				+0.4
3,410,832	-				+0.0
3,410,832	-				-0.4
3,410,852	+				-0.3
3,410,852	+				+0.4
3,410,852	+				+0.0
3,410,852	+				+0.3
3,410,852	+				-0.0
3,410,853	-				+0.0
3,410,853	-				-0.9
3,410,853	-				-2.8
3,410,853	-				+0.0
3,410,853	-				-0.7
3,410,871	+				-0.4
3,410,872	-				+1.4
3,410,899	+				-0.2
3,410,899	+				-0.5
3,410,899	+				-1.5
3,410,900	-				-1.4
3,410,901	+				+0.4
3,410,902	-				+1.1
3,410,918	+				-1.1
3,411,071	+				-0.2
3,411,152	+				-0.4
3,411,152	+				+0.6
3,411,179	+		Sama_2872	0.10	-1.4
3,411,180	-		Sama_2872	0.10	-0.7
3,411,189	+		Sama_2872	0.13	-0.5
3,411,189	+		Sama_2872	0.13	-1.1
3,411,195	+		Sama_2872	0.14	-1.4
3,411,279	+		Sama_2872	0.35	-1.0
3,411,279	+		Sama_2872	0.35	-0.3
3,411,279	+		Sama_2872	0.35	+0.0
3,411,280	-		Sama_2872	0.35	+0.4
3,411,350	+		Sama_2872	0.53	-0.5
3,411,403	+		Sama_2872	0.66	-0.4
3,411,403	+		Sama_2872	0.66	-0.4
3,411,403	+		Sama_2872	0.66	-0.4
3,411,403	+		Sama_2872	0.66	+0.2
3,411,415	+		Sama_2872	0.69	+0.3
3,411,415	+		Sama_2872	0.69	+0.2
3,411,416	-		Sama_2872	0.69	+0.7
3,411,453	+		Sama_2872	0.79	-0.5
3,411,454	-		Sama_2872	0.79	-0.7
3,411,466	+		Sama_2872	0.82	+0.0
3,411,467	-		Sama_2872	0.82	-1.8
3,411,467	-		Sama_2872	0.82	+1.4
3,411,467	-		Sama_2872	0.82	-0.5
3,411,548	+				-0.6
3,411,575	+				-2.5
3,411,576	-				+0.4
3,411,623	-				-0.6
3,411,623	-				-0.5
3,411,685	-		Sama_2873	0.30	-0.7
3,411,685	-		Sama_2873	0.30	-0.0
3,411,730	+		Sama_2873	0.51	+2.4
3,411,730	+		Sama_2873	0.51	+1.6
3,411,730	+		Sama_2873	0.51	-0.1
3,411,731	-		Sama_2873	0.52	+0.6