Strain Fitness in Shewanella amazonensis SB2B around Sama_2838

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
3,374,440	+		Sama_2836	0.81	-0.4
3,374,440	+		Sama_2836	0.81	-0.9
3,374,441	-		Sama_2836	0.81	-0.2
3,374,441	-		Sama_2836	0.81	-0.1
3,374,450	+		Sama_2836	0.83	+0.0
3,374,451	-		Sama_2836	0.83	+0.4
3,374,478	+		Sama_2836	0.88	-0.2
3,374,478	+		Sama_2836	0.88	+1.2
3,374,478	+		Sama_2836	0.88	+0.2
3,374,478	+		Sama_2836	0.88	-0.4
3,374,478	+		Sama_2836	0.88	+0.0
3,374,478	+		Sama_2836	0.88	-0.3
3,374,478	+		Sama_2836	0.88	-1.7
3,374,479	-		Sama_2836	0.88	+0.1
3,374,479	-		Sama_2836	0.88	-0.3
3,374,479	-		Sama_2836	0.88	+0.5
3,374,479	-		Sama_2836	0.88	-0.7
3,374,613	+				+1.0
3,374,613	+				-0.4
3,374,614	-				+0.2
3,374,614	-				+0.0
3,374,614	-				-0.2
3,374,720	+		Sama_2837	0.15	-0.8
3,374,720	+		Sama_2837	0.15	-1.2
3,374,720	+		Sama_2837	0.15	-2.8
3,374,721	-		Sama_2837	0.15	-0.4
3,374,721	-		Sama_2837	0.15	-0.9
3,374,721	-		Sama_2837	0.15	-1.6
3,374,724	+		Sama_2837	0.15	-1.7
3,374,724	+		Sama_2837	0.15	-1.4
3,374,724	+		Sama_2837	0.15	-1.4
3,374,724	+		Sama_2837	0.15	-1.1
3,374,724	+		Sama_2837	0.15	-1.4
3,374,725	-		Sama_2837	0.16	-2.3
3,374,725	-		Sama_2837	0.16	-0.2
3,374,725	-		Sama_2837	0.16	-1.2
3,374,725	-		Sama_2837	0.16	-2.3
3,374,725	-		Sama_2837	0.16	+0.6
3,374,772	+		Sama_2837	0.22	+1.0
3,374,772	+		Sama_2837	0.22	-1.2
3,374,773	-		Sama_2837	0.22	-0.3
3,374,773	-		Sama_2837	0.22	-2.5
3,374,773	-		Sama_2837	0.22	-1.9
3,374,818	+		Sama_2837	0.28	-3.4
3,374,819	-		Sama_2837	0.28	-0.5
3,374,900	-		Sama_2837	0.40	-2.1
3,374,959	-		Sama_2837	0.48	-1.2
3,375,040	-		Sama_2837	0.59	-2.2
3,375,047	-		Sama_2837	0.60	+0.4
3,375,047	-		Sama_2837	0.60	-2.1
3,375,082	+		Sama_2837	0.64	-1.9
3,375,083	-		Sama_2837	0.65	-1.2
3,375,091	-		Sama_2837	0.66	-0.6
3,375,109	-		Sama_2837	0.68	-0.8
3,375,146	+		Sama_2837	0.73	-2.0
3,375,147	-		Sama_2837	0.73	-1.2
3,375,184	+		Sama_2837	0.78	-2.1
3,375,200	+		Sama_2837	0.81	-3.1
3,375,201	-		Sama_2837	0.81	-2.6
3,375,201	-		Sama_2837	0.81	-1.2
3,375,206	-		Sama_2837	0.81	-0.6
3,375,262	+		Sama_2837	0.89	-1.3
3,375,272	+				-0.7
3,375,272	+				-0.4
3,375,272	+				-1.7
3,375,273	-				-1.0
3,375,273	-				-1.0
3,375,323	+				+2.0
3,375,333	+				-2.1
3,375,334	-				-0.4
3,375,344	+				-1.1
3,375,344	+				-0.7
3,375,344	+				-1.0
3,375,344	+				-0.5
3,375,344	+				-1.4
3,375,345	-				-1.2
3,375,345	-				-2.1
3,375,345	-				+0.2
3,375,345	-				-1.0
3,375,345	-				-1.6
3,375,345	-				-2.0
3,375,345	-				-1.0
3,375,491	+				-0.6
3,375,586	-				-1.6
3,375,591	-				-1.4
3,375,612	-		Sama_2838	0.10	-3.5
3,375,629	+		Sama_2838	0.11	-2.1
3,375,640	+		Sama_2838	0.12	-2.2
3,375,640	+		Sama_2838	0.12	-2.3
3,375,641	-		Sama_2838	0.12	-1.4
3,375,641	-		Sama_2838	0.12	-1.0
3,375,650	-		Sama_2838	0.12	-2.7
3,375,650	-		Sama_2838	0.12	-1.7
3,375,650	-		Sama_2838	0.12	-2.3
3,375,737	+		Sama_2838	0.17	-2.1
3,375,737	+		Sama_2838	0.17	-1.9
3,375,738	-		Sama_2838	0.17	-2.6
3,375,738	-		Sama_2838	0.17	-1.2
3,375,738	-		Sama_2838	0.17	-2.6
3,375,738	-		Sama_2838	0.17	-0.2
3,375,765	+		Sama_2838	0.19	-2.9
3,375,765	+		Sama_2838	0.19	-0.4
3,375,766	-		Sama_2838	0.19	-2.7
3,375,802	+		Sama_2838	0.21	-2.2
3,375,803	-		Sama_2838	0.21	-1.2
3,375,930	-		Sama_2838	0.29	-2.0
3,375,993	-		Sama_2838	0.32	-3.1
3,375,993	-		Sama_2838	0.32	-2.0
3,376,035	-		Sama_2838	0.35	-2.1
3,376,078	-		Sama_2838	0.37	-1.4
3,376,225	+		Sama_2838	0.46	-1.2
3,376,225	+		Sama_2838	0.46	-2.8
3,376,225	+		Sama_2838	0.46	+0.0
3,376,226	-		Sama_2838	0.46	-0.7
3,376,226	-		Sama_2838	0.46	+0.5
3,376,226	-		Sama_2838	0.46	-2.0
3,376,226	-		Sama_2838	0.46	-1.8
3,376,265	-		Sama_2838	0.48	-1.8
3,376,265	-		Sama_2838	0.48	-2.3
3,376,265	-		Sama_2838	0.48	-2.5
3,376,276	-		Sama_2838	0.49	-2.6
3,376,361	+		Sama_2838	0.54	-2.4
3,376,404	-		Sama_2838	0.56	-1.2
3,376,404	-		Sama_2838	0.56	-1.7
3,376,503	-		Sama_2838	0.62	-0.7
3,376,519	+		Sama_2838	0.63	-1.2
3,376,519	+		Sama_2838	0.63	-2.2
3,376,519	+		Sama_2838	0.63	-1.7
3,376,520	-		Sama_2838	0.63	-1.4
3,376,523	+		Sama_2838	0.63	-1.7
3,376,523	+		Sama_2838	0.63	-0.7
3,376,524	-		Sama_2838	0.63	-2.7
3,376,524	-		Sama_2838	0.63	-3.8
3,376,524	-		Sama_2838	0.63	-2.6
3,376,524	-		Sama_2838	0.63	-1.7
3,376,524	-		Sama_2838	0.63	-1.6
3,376,524	-		Sama_2838	0.63	-1.0
3,376,524	-		Sama_2838	0.63	-0.4
3,376,589	-		Sama_2838	0.67	-3.2
3,376,699	-		Sama_2838	0.73	-1.6
3,376,699	-		Sama_2838	0.73	-3.3
3,376,737	-		Sama_2838	0.76	-3.0
3,376,825	+		Sama_2838	0.81	-1.7
3,376,825	+		Sama_2838	0.81	-3.0
3,376,825	+		Sama_2838	0.81	-2.4
3,376,825	+		Sama_2838	0.81	-0.4
3,376,826	-		Sama_2838	0.81	-0.7
3,376,826	-		Sama_2838	0.81	-2.0
3,376,826	-		Sama_2838	0.81	-1.1
3,376,881	-		Sama_2838	0.84	-1.4
3,376,881	-		Sama_2838	0.84	-1.0
3,376,881	-		Sama_2838	0.84	-1.7
3,376,956	+		Sama_2838	0.88	-1.2
3,376,978	+		Sama_2838	0.90	-2.1
3,376,979	-		Sama_2838	0.90	+1.0
3,376,979	-		Sama_2838	0.90	-2.0
3,376,979	-		Sama_2838	0.90	-1.1
3,376,979	-		Sama_2838	0.90	-4.1
3,376,979	-		Sama_2838	0.90	-2.0
3,376,979	-		Sama_2838	0.90	-2.1
3,376,979	-		Sama_2838	0.90	-0.3
3,377,009	+				-2.9
3,377,031	-				-0.7
3,377,043	+				-1.6
3,377,136	-				-1.6
3,377,155	-				-2.9
3,377,173	-				-2.0
3,377,189	+				-2.0
3,377,189	+				-0.7
3,377,202	+				+0.0
3,377,252	+				-1.0
3,377,252	+				-1.1
3,377,252	+				-1.1
3,377,253	-				-1.3
3,377,253	-				+0.6
3,377,253	-				-0.2
3,377,253	-				-0.2
3,377,253	-				-1.7
3,377,253	-				-2.4
3,377,253	-				-0.5
3,377,256	-				-2.6
3,377,256	-				-1.2
3,377,303	-				-1.0
3,377,303	-				-2.5
3,377,303	-				-2.8
3,377,303	-				-0.4
3,377,304	+				-1.7
3,377,304	+				-1.6
3,377,304	+				+0.3
3,377,304	+				-2.0
3,377,304	+				-1.6
3,377,305	-				-1.4
3,377,305	-				-2.7
3,377,305	-				-1.6
3,377,305	-				-1.6
3,377,305	-				-0.5
3,377,374	-		Sama_2839	0.12	-2.1
3,377,421	-		Sama_2839	0.15	-1.7
3,377,440	-		Sama_2839	0.16	+0.3
3,377,440	-		Sama_2839	0.16	-2.2
3,377,440	-		Sama_2839	0.16	-1.8
3,377,454	-		Sama_2839	0.17	-2.3
3,377,454	-		Sama_2839	0.17	-1.4
3,377,460	+		Sama_2839	0.17	-1.4
3,377,460	+		Sama_2839	0.17	-1.7
3,377,461	-		Sama_2839	0.17	+0.0
3,377,461	-		Sama_2839	0.17	-0.6
3,377,461	-		Sama_2839	0.17	-2.4
3,377,461	-		Sama_2839	0.17	-3.0
3,377,462	+		Sama_2839	0.17	-3.1
3,377,462	+		Sama_2839	0.17	-3.5
3,377,463	-		Sama_2839	0.17	-0.6
3,377,463	-		Sama_2839	0.17	-3.9
3,377,563	+		Sama_2839	0.23	-2.2
3,377,563	+		Sama_2839	0.23	-2.1
3,377,563	+		Sama_2839	0.23	-2.2
3,377,721	+		Sama_2839	0.31	-0.4
3,377,741	+		Sama_2839	0.33	-1.1
3,377,787	+		Sama_2839	0.35	-2.0
3,377,787	+		Sama_2839	0.35	+0.3
3,377,788	-		Sama_2839	0.35	-0.9
3,377,788	-		Sama_2839	0.35	-2.8
3,377,788	-		Sama_2839	0.35	-2.1
3,377,977	-		Sama_2839	0.46	-2.1
3,378,032	-		Sama_2839	0.49	-0.6
3,378,114	+		Sama_2839	0.53	-1.8
3,378,141	+		Sama_2839	0.55	-0.4
3,378,142	-		Sama_2839	0.55	-1.0
3,378,142	-		Sama_2839	0.55	-1.0
3,378,142	-		Sama_2839	0.55	-2.2