Strain Fitness in Shewanella amazonensis SB2B around Sama_2187

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,645,280	-		Sama_2185	0.87	+0.4
2,645,280	-		Sama_2185	0.87	-0.3
2,645,280	-		Sama_2185	0.87	-0.7
2,645,283	+		Sama_2185	0.87	-0.2
2,645,283	+		Sama_2185	0.87	-0.9
2,645,284	-		Sama_2185	0.87	-0.5
2,645,284	-		Sama_2185	0.87	-0.2
2,645,332	+		Sama_2185	0.89	+0.2
2,645,332	+		Sama_2185	0.89	-0.0
2,645,332	+		Sama_2185	0.89	+0.9
2,645,332	+		Sama_2185	0.89	-0.7
2,645,333	-		Sama_2185	0.89	+0.2
2,645,380	+				+1.4
2,645,380	+				+0.0
2,645,380	+				+0.4
2,645,380	+				-1.0
2,645,380	+				-1.9
2,645,380	+				-1.7
2,645,380	+				-2.0
2,645,380	+				+0.4
2,645,381	-				-0.9
2,645,388	+				-0.1
2,645,388	+				+1.4
2,645,388	+				-0.9
2,645,388	+				-1.4
2,645,388	+				-0.5
2,645,388	+				+0.6
2,645,388	+				-0.4
2,645,389	-				-1.4
2,645,389	-				-0.6
2,645,389	-				-0.0
2,645,389	-				+0.0
2,645,389	-				+1.0
2,645,414	+				+0.3
2,645,414	+				+0.1
2,645,415	-				-0.7
2,645,435	-				+0.0
2,645,487	+				+0.9
2,645,487	+				+0.1
2,645,487	+				+0.8
2,645,487	+				-1.2
2,645,488	-				-0.0
2,645,488	-				+0.0
2,645,488	-				-0.2
2,645,488	-				+0.6
2,645,488	-				+0.1
2,645,522	+				-0.2
2,645,523	-				-1.2
2,645,568	+				-0.0
2,645,568	+				+0.3
2,645,569	-				+1.2
2,645,569	-				-1.2
2,645,569	-				+0.8
2,645,598	+				+0.9
2,645,643	-				-1.7
2,645,653	+				+0.5
2,645,668	+				+1.0
2,645,669	-				+0.7
2,645,669	-				+0.8
2,645,679	+				-2.0
2,645,680	-				+0.8
2,645,680	-				+1.8
2,645,684	+				+0.4
2,645,685	-				-0.3
2,645,685	-				+0.1
2,645,718	+				+0.3
2,645,719	-				-0.4
2,645,751	+				-1.2
2,645,766	-				-0.2
2,645,903	-		Sama_2186	0.34	-1.2
2,645,981	+		Sama_2186	0.49	+1.4
2,646,024	+		Sama_2186	0.57	+0.8
2,646,024	+		Sama_2186	0.57	-1.4
2,646,071	-		Sama_2186	0.66	+0.4
2,646,071	-		Sama_2186	0.66	-0.2
2,646,071	-		Sama_2186	0.66	-2.2
2,646,091	+		Sama_2186	0.69	+0.2
2,646,108	+		Sama_2186	0.72	-0.4
2,646,108	+		Sama_2186	0.72	+0.4
2,646,108	+		Sama_2186	0.72	-0.4
2,646,108	+		Sama_2186	0.72	-0.7
2,646,109	-		Sama_2186	0.73	-1.5
2,646,109	-		Sama_2186	0.73	+0.7
2,646,109	-		Sama_2186	0.73	-1.6
2,646,332	+				-0.9
2,646,351	+				-2.2
2,646,352	-				-2.2
2,646,353	+				-1.6
2,646,354	-				-2.4
2,646,368	-		Sama_2187	0.10	-1.3
2,646,479	-		Sama_2187	0.22	-1.0
2,646,479	-		Sama_2187	0.22	-2.2
2,646,479	-		Sama_2187	0.22	-3.3
2,646,482	-		Sama_2187	0.23	-3.3
2,646,482	-		Sama_2187	0.23	-1.2
2,646,482	-		Sama_2187	0.23	-2.4
2,646,535	+		Sama_2187	0.29	-1.2
2,646,535	+		Sama_2187	0.29	-3.0
2,646,536	-		Sama_2187	0.29	-1.6
2,646,536	-		Sama_2187	0.29	-1.1
2,646,693	-		Sama_2187	0.46	-2.0
2,646,854	-		Sama_2187	0.63	-1.9
2,646,854	-		Sama_2187	0.63	-1.9
2,646,854	-		Sama_2187	0.63	-0.6
2,646,854	-		Sama_2187	0.63	-0.9
2,646,864	+		Sama_2187	0.65	-2.4
2,646,865	-		Sama_2187	0.65	-2.8
2,646,865	-		Sama_2187	0.65	-1.9
2,646,957	+		Sama_2187	0.75	-2.0
2,646,979	+		Sama_2187	0.77	-2.4
2,646,980	-		Sama_2187	0.77	-1.2
2,646,980	-		Sama_2187	0.77	-1.6
2,646,980	-		Sama_2187	0.77	-1.2
2,647,013	-		Sama_2187	0.81	-2.7
2,647,238	+		Sama_2188	0.12	-0.6
2,647,239	-		Sama_2188	0.12	+1.4
2,647,239	-		Sama_2188	0.12	+0.2
2,647,239	-		Sama_2188	0.12	-0.2
2,647,268	+		Sama_2188	0.20	-2.8
2,647,288	-		Sama_2188	0.26	+1.0
2,647,289	+		Sama_2188	0.26	-2.5
2,647,290	-		Sama_2188	0.26	+0.4
2,647,310	+		Sama_2188	0.32	-1.4
2,647,325	+		Sama_2188	0.36	+1.4
2,647,326	-		Sama_2188	0.36	-0.8
2,647,479	-		Sama_2188	0.79	+1.2
2,647,513	+		Sama_2188	0.88	+0.7
2,647,546	-				-1.4
2,647,546	-				+1.2
2,647,566	+				-1.4
2,647,567	-				-0.2
2,647,590	+				-0.4
2,647,590	+				-1.0
2,647,590	+				-1.6
2,647,591	-				-1.6
2,647,591	-				-0.6
2,647,591	-				+0.4
2,647,591	-				+0.0
2,647,591	-				-0.3
2,647,596	+				-1.4
2,647,597	-				-0.7
2,647,828	-		Sama_2189	0.62	-0.9
2,647,869	-		Sama_2189	0.75	+0.0
2,647,869	-		Sama_2189	0.75	+0.2
2,647,937	+				+0.8
2,647,938	-				-0.9
2,647,961	-				+0.3
2,647,961	-				+0.8
2,647,966	+				-1.9
2,647,966	+				-0.0
2,647,966	+				-1.4
2,647,966	+				-1.5
2,647,966	+				+0.3
2,647,966	+				-0.4
2,647,966	+				+0.2
2,647,967	-				-0.7
2,647,967	-				+0.8
2,647,967	-				+0.8
2,647,967	-				-1.9
2,647,967	-				+0.8
2,647,984	+				+0.8
2,647,984	+				-0.2
2,647,984	+				-3.1
2,647,985	-				+0.7
2,647,985	-				-0.3
2,647,985	-				+0.3
2,647,986	+				-0.8
2,647,986	+				+0.2
2,647,986	+				-1.0
2,647,986	+				+0.4
2,647,986	+				+0.4
2,647,987	-				-0.4
2,647,987	-				-1.6
2,648,015	-				-0.0
2,648,087	-				-0.9
2,648,134	-				-0.6
2,648,143	-				+0.4
2,648,143	-				-0.1
2,648,151	+				+0.1
2,648,151	+				+1.4
2,648,152	-				+1.0
2,648,152	-				-1.5