Strain Fitness in Shewanella amazonensis SB2B around Sama_2000

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,428,639	+		Sama_1999	0.17	-0.4
2,428,678	+		Sama_1999	0.22	-0.1
2,428,709	+		Sama_1999	0.25	+0.3
2,428,710	-		Sama_1999	0.25	+1.1
2,428,788	+		Sama_1999	0.33	-2.1
2,428,788	+		Sama_1999	0.33	-0.9
2,428,788	+		Sama_1999	0.33	-0.8
2,428,815	+		Sama_1999	0.36	+0.0
2,428,816	-		Sama_1999	0.36	+1.1
2,428,816	-		Sama_1999	0.36	+0.2
2,428,873	+		Sama_1999	0.42	+0.7
2,428,875	+		Sama_1999	0.43	+1.0
2,428,875	+		Sama_1999	0.43	-1.7
2,428,875	+		Sama_1999	0.43	+1.5
2,428,875	+		Sama_1999	0.43	+1.1
2,428,875	+		Sama_1999	0.43	-0.0
2,428,875	+		Sama_1999	0.43	+0.2
2,428,875	+		Sama_1999	0.43	-0.2
2,428,875	+		Sama_1999	0.43	+0.1
2,428,875	+		Sama_1999	0.43	-0.3
2,428,876	-		Sama_1999	0.43	+0.5
2,428,876	-		Sama_1999	0.43	+0.2
2,428,876	-		Sama_1999	0.43	+0.8
2,428,876	-		Sama_1999	0.43	+0.4
2,428,876	-		Sama_1999	0.43	-0.2
2,428,876	-		Sama_1999	0.43	-1.3
2,428,914	+		Sama_1999	0.47	+0.4
2,428,960	+		Sama_1999	0.52	-2.0
2,428,961	-		Sama_1999	0.52	+0.4
2,429,025	+		Sama_1999	0.59	+0.9
2,429,025	+		Sama_1999	0.59	+0.4
2,429,026	-		Sama_1999	0.59	+1.4
2,429,074	+		Sama_1999	0.64	+0.4
2,429,075	-		Sama_1999	0.64	-0.6
2,429,247	+		Sama_1999	0.83	+0.8
2,429,247	+		Sama_1999	0.83	-0.1
2,429,267	+		Sama_1999	0.85	-0.2
2,429,267	+		Sama_1999	0.85	-0.6
2,429,274	+		Sama_1999	0.86	+0.5
2,429,274	+		Sama_1999	0.86	+0.4
2,429,274	+		Sama_1999	0.86	+0.1
2,429,323	+				-1.0
2,429,323	+				-0.6
2,429,333	-				+0.9
2,429,357	-				+0.4
2,429,403	+				-0.1
2,429,404	-				-0.5
2,429,404	-				+0.6
2,429,528	-				+1.6
2,429,528	-				-0.2
2,429,528	-				+1.9
2,429,528	-				+1.2
2,429,528	-				-1.6
2,429,528	-				-0.7
2,429,560	+				-1.2
2,429,561	-				-0.7
2,429,561	-				-0.8
2,429,561	-				-1.9
2,429,561	-				+0.2
2,429,561	-				-1.0
2,429,561	-				+0.8
2,429,561	-				+0.1
2,429,561	-				+1.0
2,429,637	+				-0.1
2,429,662	-				+1.1
2,429,709	-		Sama_2000	0.13	+1.2
2,429,709	-		Sama_2000	0.13	+0.5
2,429,709	-		Sama_2000	0.13	-0.2
2,429,810	-		Sama_2000	0.25	+1.4
2,429,900	+		Sama_2000	0.36	+1.5
2,429,900	+		Sama_2000	0.36	-0.5
2,429,901	-		Sama_2000	0.36	+1.0
2,429,901	-		Sama_2000	0.36	+0.3
2,429,901	-		Sama_2000	0.36	+0.0
2,429,913	+		Sama_2000	0.37	-0.7
2,429,921	-		Sama_2000	0.38	-0.2
2,429,949	+		Sama_2000	0.41	-0.6
2,429,950	-		Sama_2000	0.41	+0.1
2,429,962	-		Sama_2000	0.43	+0.4
2,429,983	+		Sama_2000	0.45	-0.1
2,429,990	-		Sama_2000	0.46	-0.9
2,429,999	+		Sama_2000	0.47	+0.2
2,430,000	-		Sama_2000	0.47	+0.1
2,430,013	+		Sama_2000	0.49	+0.5
2,430,014	-		Sama_2000	0.49	-1.1
2,430,038	+		Sama_2000	0.52	-0.1
2,430,038	+		Sama_2000	0.52	-2.1
2,430,039	-		Sama_2000	0.52	-1.0
2,430,039	-		Sama_2000	0.52	+0.4
2,430,129	+		Sama_2000	0.62	-0.5
2,430,194	-		Sama_2000	0.70	-0.2
2,430,194	-		Sama_2000	0.70	+0.4
2,430,235	+		Sama_2000	0.75	-1.3
2,430,235	+		Sama_2000	0.75	+0.4
2,430,334	+		Sama_2000	0.86	+0.5
2,430,335	-		Sama_2000	0.86	+0.2
2,430,335	-		Sama_2000	0.86	-0.1
2,430,335	-		Sama_2000	0.86	-1.5
2,430,341	-		Sama_2000	0.87	-1.0
2,430,341	-		Sama_2000	0.87	+0.3
2,430,341	-		Sama_2000	0.87	+0.2
2,430,341	-		Sama_2000	0.87	+2.4
2,430,341	-		Sama_2000	0.87	-2.9
2,430,344	-		Sama_2000	0.87	+2.0
2,430,397	+				-0.6
2,430,398	-				-2.2
2,430,410	-				-1.2
2,430,410	-				-0.2
2,430,470	+				-0.1
2,430,471	-				-1.1
2,430,471	-				-0.6
2,430,492	+				-1.5
2,430,515	-				-1.5
2,430,536	-				+1.0
2,430,536	-				+1.0
2,430,620	+				-1.1
2,430,635	-				-0.6
2,430,638	+				-0.2
2,430,638	+				-0.5
2,430,705	+				-0.8
2,430,723	+				+1.4
2,430,776	+				-0.8
2,430,822	+				+0.5
2,430,822	+				+0.7
2,430,822	+				-0.6
2,430,822	+				+0.8
2,430,823	-				-0.8
2,430,853	+		Sama_2001	0.11	+0.0
2,430,853	+		Sama_2001	0.11	+0.1
2,430,853	+		Sama_2001	0.11	-0.4
2,430,853	+		Sama_2001	0.11	-0.2
2,430,854	-		Sama_2001	0.11	-0.1
2,430,854	-		Sama_2001	0.11	-0.2
2,430,854	-		Sama_2001	0.11	+0.1
2,430,854	-		Sama_2001	0.11	-0.2
2,430,854	-		Sama_2001	0.11	+0.5
2,430,854	-		Sama_2001	0.11	+0.7
2,430,865	+		Sama_2001	0.12	+1.8
2,430,865	+		Sama_2001	0.12	+0.5
2,430,866	-		Sama_2001	0.12	-0.3
2,430,866	-		Sama_2001	0.12	+0.2
2,430,871	+		Sama_2001	0.12	+0.3
2,430,871	+		Sama_2001	0.12	-0.1
2,430,871	+		Sama_2001	0.12	+0.4
2,430,871	+		Sama_2001	0.12	+0.1
2,430,871	+		Sama_2001	0.12	+1.1
2,430,871	+		Sama_2001	0.12	+0.3
2,430,872	-		Sama_2001	0.12	-1.0
2,430,872	-		Sama_2001	0.12	-1.2
2,430,872	-		Sama_2001	0.12	-0.2
2,430,872	-		Sama_2001	0.12	-0.4
2,430,872	-		Sama_2001	0.12	-1.8
2,430,872	-		Sama_2001	0.12	+0.1
2,430,872	-		Sama_2001	0.12	-0.2
2,430,872	-		Sama_2001	0.12	-0.8
2,430,872	-		Sama_2001	0.12	-1.3
2,431,127	+		Sama_2001	0.37	-0.8
2,431,127	+		Sama_2001	0.37	-1.6
2,431,178	+		Sama_2001	0.42	+0.4
2,431,178	+		Sama_2001	0.42	-0.2
2,431,178	+		Sama_2001	0.42	-0.1
2,431,183	-		Sama_2001	0.42	-0.6
2,431,217	-		Sama_2001	0.45	-0.6
2,431,258	-		Sama_2001	0.49	-0.4
2,431,428	+		Sama_2001	0.66	+0.5
2,431,428	+		Sama_2001	0.66	-0.1
2,431,428	+		Sama_2001	0.66	+0.5
2,431,429	-		Sama_2001	0.66	+0.1
2,431,429	-		Sama_2001	0.66	+0.4
2,431,429	-		Sama_2001	0.66	+0.1
2,431,429	-		Sama_2001	0.66	+1.4
2,431,432	+		Sama_2001	0.66	+0.7
2,431,433	-		Sama_2001	0.66	-1.5
2,431,433	-		Sama_2001	0.66	-0.4
2,431,433	-		Sama_2001	0.66	+0.4
2,431,433	-		Sama_2001	0.66	-1.8
2,431,433	-		Sama_2001	0.66	+0.7
2,431,433	-		Sama_2001	0.66	+0.5