Strain Fitness in Shewanella amazonensis SB2B around Sama_1936

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,362,746	+		Sama_1935	0.11	+1.1
2,362,746	+		Sama_1935	0.11	+0.7
2,362,784	-		Sama_1935	0.15	-1.5
2,362,808	+		Sama_1935	0.18	-0.8
2,362,838	-		Sama_1935	0.21	+0.7
2,362,838	-		Sama_1935	0.21	+0.0
2,362,906	+		Sama_1935	0.28	-1.5
2,362,978	+		Sama_1935	0.36	+0.5
2,363,013	-		Sama_1935	0.40	+1.1
2,363,029	+		Sama_1935	0.42	-1.1
2,363,029	+		Sama_1935	0.42	+0.7
2,363,030	-		Sama_1935	0.42	+0.0
2,363,030	-		Sama_1935	0.42	+0.1
2,363,030	-		Sama_1935	0.42	+0.3
2,363,031	+		Sama_1935	0.42	-0.3
2,363,031	+		Sama_1935	0.42	+1.0
2,363,031	+		Sama_1935	0.42	-1.3
2,363,031	+		Sama_1935	0.42	+1.3
2,363,032	-		Sama_1935	0.42	+0.6
2,363,032	-		Sama_1935	0.42	+1.7
2,363,032	-		Sama_1935	0.42	-0.8
2,363,032	-		Sama_1935	0.42	+0.0
2,363,069	+		Sama_1935	0.46	+0.5
2,363,092	+		Sama_1935	0.48	+1.1
2,363,151	-		Sama_1935	0.55	-1.4
2,363,168	-		Sama_1935	0.56	+0.5
2,363,189	+		Sama_1935	0.59	+1.9
2,363,189	+		Sama_1935	0.59	+0.7
2,363,193	+		Sama_1935	0.59	+0.3
2,363,193	+		Sama_1935	0.59	+1.3
2,363,194	-		Sama_1935	0.59	+0.1
2,363,207	+		Sama_1935	0.61	-2.0
2,363,208	-		Sama_1935	0.61	-0.4
2,363,208	-		Sama_1935	0.61	-0.5
2,363,208	-		Sama_1935	0.61	-2.0
2,363,209	+		Sama_1935	0.61	+0.7
2,363,210	-		Sama_1935	0.61	+0.9
2,363,231	-		Sama_1935	0.63	-1.8
2,363,271	-		Sama_1935	0.67	-1.8
2,363,295	+		Sama_1935	0.70	-1.0
2,363,296	-		Sama_1935	0.70	+0.9
2,363,300	+		Sama_1935	0.71	+0.7
2,363,316	+		Sama_1935	0.72	-0.8
2,363,317	-		Sama_1935	0.72	-1.8
2,363,533	+				-0.4
2,363,534	-				+0.0
2,363,589	+				+0.7
2,363,590	-				-0.5
2,363,590	-				-0.5
2,363,590	-				-1.6
2,363,594	-				+0.2
2,363,596	+				-1.5
2,363,596	+				+1.3
2,363,626	+				+0.0
2,363,626	+				+0.4
2,363,691	+				-0.3
2,363,692	-				-0.7
2,363,692	-				+0.9
2,363,692	-				-0.7
2,363,692	-				-0.8
2,363,714	+				-0.1
2,363,715	-				-1.5
2,363,715	-				-0.7
2,363,725	-				-0.4
2,363,772	+				-0.4
2,363,773	-				-0.8
2,363,773	-				+1.3
2,363,773	-				+0.5
2,363,781	+				-0.1
2,363,781	+				-0.8
2,363,782	-				+0.8
2,363,782	-				-0.7
2,363,782	-				-0.8
2,363,807	+				+0.0
2,363,808	-				-0.6
2,363,818	-				-0.4
2,363,870	+		Sama_1936	0.15	+0.3
2,363,871	-		Sama_1936	0.15	-0.8
2,363,871	-		Sama_1936	0.15	+0.0
2,363,911	-		Sama_1936	0.20	+1.1
2,363,911	-		Sama_1936	0.20	-1.1
2,363,911	-		Sama_1936	0.20	+0.9
2,363,969	+		Sama_1936	0.27	-0.3
2,363,980	-		Sama_1936	0.28	-0.7
2,363,989	-		Sama_1936	0.29	+0.0
2,364,022	+		Sama_1936	0.33	-0.8
2,364,038	-		Sama_1936	0.35	+0.3
2,364,038	-		Sama_1936	0.35	-2.1
2,364,040	+		Sama_1936	0.35	+0.1
2,364,041	-		Sama_1936	0.35	+1.0
2,364,041	-		Sama_1936	0.35	-1.6
2,364,093	+		Sama_1936	0.42	-0.9
2,364,094	-		Sama_1936	0.42	-0.3
2,364,094	-		Sama_1936	0.42	+0.2
2,364,094	-		Sama_1936	0.42	-1.5
2,364,094	-		Sama_1936	0.42	+0.1
2,364,094	-		Sama_1936	0.42	-2.3
2,364,094	-		Sama_1936	0.42	+1.0
2,364,153	+		Sama_1936	0.49	-0.3
2,364,191	-		Sama_1936	0.54	+0.3
2,364,191	-		Sama_1936	0.54	-1.7
2,364,244	-		Sama_1936	0.60	+0.0
2,364,259	-		Sama_1936	0.62	-0.7
2,364,262	-		Sama_1936	0.62	-1.3
2,364,302	+		Sama_1936	0.67	+0.0
2,364,303	-		Sama_1936	0.67	-1.0
2,364,343	-		Sama_1936	0.72	-2.4
2,364,344	+		Sama_1936	0.72	+1.9
2,364,345	-		Sama_1936	0.72	-0.3
2,364,392	-		Sama_1936	0.78	+0.1
2,364,392	-		Sama_1936	0.78	-0.3
2,364,428	+		Sama_1936	0.82	+0.2
2,364,429	-		Sama_1936	0.82	-1.1
2,364,457	-		Sama_1936	0.86	+0.3
2,364,527	-				-0.4
2,364,527	-				-1.6
2,364,572	+				+0.0
2,364,582	+				+1.0
2,364,583	-				-2.8
2,364,588	-				-2.0
2,364,590	+				+0.5
2,364,590	+				+0.7
2,364,593	+				-1.3
2,364,594	-				+0.7
2,364,604	-				+1.1
2,364,609	-				+0.3
2,364,801	-		Sama_1937	0.23	+0.1
2,364,801	-		Sama_1937	0.23	-0.1
2,364,810	+		Sama_1937	0.24	-0.6
2,364,810	+		Sama_1937	0.24	+0.9
2,364,814	-		Sama_1937	0.24	-0.5
2,364,832	+		Sama_1937	0.27	+0.3
2,364,851	-		Sama_1937	0.30	-0.7
2,364,902	-		Sama_1937	0.37	-0.7
2,365,027	-		Sama_1937	0.54	-2.0
2,365,147	+		Sama_1937	0.71	-1.3
2,365,148	-		Sama_1937	0.71	+0.1
2,365,239	+		Sama_1937	0.84	-2.1
2,365,239	+		Sama_1937	0.84	+0.9
2,365,239	+		Sama_1937	0.84	+0.1
2,365,239	+		Sama_1937	0.84	-0.4
2,365,242	-		Sama_1937	0.85	-1.8
2,365,249	-		Sama_1937	0.86	+1.9
2,365,249	-		Sama_1937	0.86	-2.5
2,365,279	+		Sama_1937	0.90	-0.8
2,365,280	-				-0.3
2,365,304	-				-0.3
2,365,304	-				+0.9
2,365,324	+				-1.5
2,365,350	+				+0.9
2,365,358	+				+0.3
2,365,358	+				+1.8
2,365,359	-				-2.0
2,365,359	-				-1.5
2,365,414	-		Sama_1938	0.24	-2.8
2,365,453	-		Sama_1938	0.37	+0.3
2,365,457	-		Sama_1938	0.39	-1.4