Strain Fitness in Shewanella amazonensis SB2B around Sama_1933

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,358,673	+		Sama_1931	0.42	+0.7
2,358,727	+		Sama_1931	0.49	-0.0
2,358,857	-		Sama_1931	0.65	+0.1
2,358,875	-		Sama_1931	0.67	-0.7
2,358,977	+		Sama_1931	0.80	-1.4
2,358,981	+		Sama_1931	0.80	-0.1
2,358,981	+		Sama_1931	0.80	+0.0
2,358,982	-		Sama_1931	0.80	-2.5
2,359,050	+		Sama_1931	0.89	+0.3
2,359,555	-				-0.3
2,359,555	-				+0.0
2,359,555	-				-0.7
2,359,586	-				-0.3
2,359,599	+				-0.8
2,359,599	+				-0.7
2,359,600	-				-0.0
2,359,600	-				-0.8
2,359,600	-				+1.5
2,359,603	+				+1.3
2,359,604	-				+0.4
2,359,604	-				-0.3
2,359,689	-				+0.7
2,359,724	-				+0.3
2,359,823	+		Sama_1933	0.19	-0.8
2,359,824	-		Sama_1933	0.19	-1.0
2,359,826	-		Sama_1933	0.19	-1.0
2,360,124	-		Sama_1933	0.46	+1.6
2,360,128	+		Sama_1933	0.46	+0.3
2,360,191	-		Sama_1933	0.52	+0.2
2,360,255	-		Sama_1933	0.57	+0.3
2,360,375	-		Sama_1933	0.68	-1.0
2,360,499	-		Sama_1933	0.79	+0.0
2,360,539	-		Sama_1933	0.83	-0.3
2,360,563	-		Sama_1933	0.85	+0.8
2,360,577	-		Sama_1933	0.86	+1.1
2,360,587	+		Sama_1933	0.87	-3.3
2,360,588	-		Sama_1933	0.87	+0.8
2,360,599	-		Sama_1933	0.88	+1.7
2,360,614	+		Sama_1933	0.90	+0.9
2,360,614	+		Sama_1933	0.90	-0.5
2,360,617	+		Sama_1933	0.90	+0.5
2,360,617	+		Sama_1933	0.90	+0.0
2,360,618	-				-0.3
2,360,618	-				-1.0
2,360,618	-				+1.0
2,360,618	-				-1.8
2,360,621	+				+1.9
2,360,672	-				-1.3
2,360,709	+				-0.3
2,360,710	-				-2.0
2,360,744	-				-2.4
2,360,762	-				+0.5
2,360,790	-				-0.3
2,360,803	-				-1.5
2,360,818	-				-0.4
2,360,854	-				+0.6
2,360,858	-				+1.7
2,360,858	-				+0.5
2,360,883	+				+0.3
2,360,893	-				+0.7
2,360,893	-				-0.7
2,360,894	+				+0.9
2,360,925	+				+0.7
2,360,926	-				+2.1
2,360,926	-				+1.0
2,360,926	-				+0.4
2,361,119	+		Sama_1934	0.20	+0.1
2,361,120	-		Sama_1934	0.20	+0.9
2,361,144	-		Sama_1934	0.21	+0.1
2,361,182	-		Sama_1934	0.23	+0.7
2,361,182	-		Sama_1934	0.23	+0.7
2,361,182	-		Sama_1934	0.23	+0.1
2,361,182	-		Sama_1934	0.23	+0.7
2,361,331	-		Sama_1934	0.32	+1.3
2,361,342	-		Sama_1934	0.33	-1.3
2,361,356	+		Sama_1934	0.34	-2.6
2,361,356	+		Sama_1934	0.34	+2.8
2,361,399	-		Sama_1934	0.36	+1.2
2,361,538	-		Sama_1934	0.45	+1.9
2,361,546	+		Sama_1934	0.45	-1.8
2,361,593	-		Sama_1934	0.48	+0.9
2,361,622	-		Sama_1934	0.50	+0.9
2,361,622	-		Sama_1934	0.50	+0.3
2,361,625	-		Sama_1934	0.50	-0.5
2,361,646	-		Sama_1934	0.51	+0.3